BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0028.p (533 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K589.1 B3K589_9BACI Histidine kinase internal region 625 e-177 B1DIP8.1 B1DIP8_9BACL Putative uncharacterized protein 347 2e-93 B1DIP7.1 B1DIP7_9BACL Histidine kinase 253 4e-65 B1DAE2.1 B1DAE2_9BACL Histidine kinase internal region 149 9e-34 B6FLW3.1 B6FLW3_9CLOT Putative uncharacterized protein 138 2e-30 >B3K589.1 B3K589_9BACI Histidine kinase internal region Length = 610 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 316/527 (59%), Positives = 388/527 (73%), Gaps = 7/527 (1%) Query: 12 RLSVKQQLILLFLIMISPILILNSYGNYKAEEILKRHVTNAYVELNKQNFAIINRDIDTV 71 R+++KQQ+ILLFL+++ P+ LN+YGN A +ILKRHVTNAY+ELNKQNF +INRDI+TV Sbjct: 11 RMNIKQQMILLFLVLVIPLFGLNAYGNSMAGQILKRHVTNAYIELNKQNFKLINRDIETV 70 Query: 72 NKITTTVIQNPVLQQLHVSGSEPVMERVERYETIEKLLGSYSQGAGRGDGIYYSLYVYDP 131 NK+T+TVIQN +QQL V+ERV+ YE +EK+L S+SQ + +YYSLYVYDP Sbjct: 71 NKVTSTVIQNSQIQQLDPFAEVTVLERVKNYERLEKMLISFSQETDEREPVYYSLYVYDP 130 Query: 132 DNYYFFAPNFPQVKKAGVYFFST-GEKPYWFDQVVQQKGRGYLMFAEKLSPQA---ENLK 187 DN YFFAP +P +KAGVYFFS EKP WFD+ V KG GYL LSP ++ + Sbjct: 131 DNSYFFAPYYPDRRKAGVYFFSDEKEKPAWFDEAVAMKGNGYLKRMANLSPPVQGRQDQE 190 Query: 188 TLTYVRAVNSIYRGAGTIGVLVVTKMESKIGESLKSIXXXXEGEIYLTDMNNQVLASTTN 247 TL+YVRAVN+IYRG GTIGVL+VT ++++IGESL ++ +GE+Y TD ++ +L S+ Sbjct: 191 TLSYVRAVNNIYRG-GTIGVLLVTNLDARIGESLSTV-SIPDGELYFTDWDDNILTSSVQ 248 Query: 248 ATGEVIELPEGAETGDPE-GTEDIITDDFIYVVNNNHAFAQKLVYKVPVKALLQQQKEMK 306 +ELP A+ G G D+IT DFIYV++ N+ QKLVYKVPVK LL QQ EMK Sbjct: 249 GMAGKLELPPEADPGHSTIGVMDVITSDFIYVIDYNYVLQQKLVYKVPVKTLLAQQSEMK 308 Query: 307 RVIQYITVAYALFGLIIITYFWRSLMTPLQKLAFFVRKYEPGNRVPETPQRGTNDEVSVL 366 RVIQ I+VAY GLII+ YFW+SLMTPLQKLA FVR+YEPGN VPETP R DEVSVL Sbjct: 309 RVIQVISVAYFAVGLIIVFYFWQSLMTPLQKLAHFVRRYEPGNVVPETPYRRRKDEVSVL 368 Query: 367 IASTYDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLLYNTLESIYWKSSLEGNVE 426 I++ YDMARRLN LI YKY INPHLLYNTLESIYWKS++EGN E Sbjct: 369 ISTIYDMARRLNDLIHYKYNMDLKQKEAQLQLLYQQINPHLLYNTLESIYWKSTMEGNTE 428 Query: 427 SAEMIKELSKLMKISLSRGRELITLEEELEHASAYIKLQQHRYDYVFTVIWNIAPETKTN 486 SAEMIK+LSKLMKISLSRGR+LITL EELEHA AY+ LQ +RYDY FT+ W++ N Sbjct: 429 SAEMIKDLSKLMKISLSRGRDLITLGEELEHAGAYMNLQLNRYDYQFTIRWDVPEALLAN 488 Query: 487 LIPKITLQPLIENAIIHGVKNMAEDGEILITSVLQEDTILITIADNG 533 +PKITLQPL+ENAIIHG+KNM EDG I ++ L+ D + I DNG Sbjct: 489 HVPKITLQPLLENAIIHGIKNMGEDGMIRVSGHLEGDRCRVVIEDNG 535 >B1DIP8.1 B1DIP8_9BACL Putative uncharacterized protein Length = 362 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 179/327 (54%), Positives = 239/327 (73%), Gaps = 6/327 (1%) Query: 12 RLSVKQQLILLFLIMISPILILNSYGNYKAEEILKRHVTNAYVELNKQNFAIINRDIDTV 71 +LSVKQQL+LLFL+M+SPI IL+SYGN +AE+ILKRHVTNAY ELNKQN +I+RDIDTV Sbjct: 11 KLSVKQQLLLLFLLMVSPIFILHSYGNSEAEQILKRHVTNAYAELNKQNHTLIDRDIDTV 70 Query: 72 NKITTTVIQNPVLQQLHVSGSEPVMERVERYETIEKLLGSYSQGAGRGDGIYYSLYVYDP 131 NKITTT+IQNP QQL +E V+ERV +YE ++ LL YS G+ +YYSLY+YDP Sbjct: 71 NKITTTIIQNPTAQQLVPDDAETVIERVRKYEKMDALLAGYSTALNGGEAVYYSLYIYDP 130 Query: 132 DNYYFFAPNFPQVKKAGVYFFSTGEKPYWFDQVVQQKGRGYLMFAEKLSPQAENLKTLTY 191 +NYYFFAP Q+ ++GVYFFS KP WFD+ V KG+G++ E + +TL Y Sbjct: 131 NNYYFFAPKV-QMIQSGVYFFSDANKPKWFDKAVGLKGQGFMEIIEN-NDMLVKKRTLAY 188 Query: 192 VRAVNSIYRGAGTIGVLVVTKMESKIGESLKSIXXXXEGEIYLTDMNNQVLASTTNAT-G 250 +RAVN++ +G IGVL+ T M+ K+ ES++S+ GEI+ TD N +LAST+ T G Sbjct: 189 IRAVNTVSQGHSVIGVLIATNMDKKLAESMQSVSLPG-GEIFFTDKQNYILASTSPKTMG 247 Query: 251 EVIELPEGAETGDPEG-TEDIITDDFIYVVNNNHAFAQKLVYKVPVKALLQQQKEMKRVI 309 +ELP A +G+ E + I+T ++IY+ ++N Q+L+YK+P+K+LLQQQ E+KRVI Sbjct: 248 STVELPVTA-SGEAESLNKPIMTSEYIYMASDNELLQQRLIYKIPIKSLLQQQNEVKRVI 306 Query: 310 QYITVAYALFGLIIITYFWRSLMTPLQ 336 Q I+VAY LFG I+I YFWRSLMTP + Sbjct: 307 QLISVAYILFGCIVIFYFWRSLMTPCK 333 >B1DIP7.1 B1DIP7_9BACL Histidine kinase Length = 254 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 126/183 (68%), Positives = 138/183 (75%) Query: 351 VPETPQRGTNDEVSVLIASTYDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLLYN 410 +PETP +G NDEV VLI + YDMARRLN LI KY INPHLLYN Sbjct: 1 MPETPGKGRNDEVGVLIGALYDMARRLNGLIHDKYQMEIKQRESQLQILYQQINPHLLYN 60 Query: 411 TLESIYWKSSLEGNVESAEMIKELSKLMKISLSRGRELITLEEELEHASAYIKLQQHRYD 470 TLESIYWKSSLEGN ESAEMIKELSKLMKISLSRGRELITL EELEHA+AY+KLQQ RYD Sbjct: 61 TLESIYWKSSLEGNSESAEMIKELSKLMKISLSRGRELITLAEELEHAAAYVKLQQKRYD 120 Query: 471 YVFTVIWNIAPETKTNLIPKITLQPLIENAIIHGVKNMAEDGEILITSVLQEDTILITIA 530 Y F VIW + E +LIPK+TLQPLIENAIIHGVKNM EDGEI I + + D +LI + Sbjct: 121 YDFQVIWAVPEEMMNHLIPKVTLQPLIENAIIHGVKNMGEDGEIHINAEYEGDKLLIRVE 180 Query: 531 DNG 533 DNG Sbjct: 181 DNG 183 >B1DAE2.1 B1DAE2_9BACL Histidine kinase internal region Length = 627 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 140/542 (25%), Positives = 243/542 (44%), Gaps = 52/542 (9%) Query: 14 SVKQQLILLFL-IMISPILILNSYGNYKAEEILKRHVTNAYVELNKQNFAIINRDID--- 69 S++ +LIL FL I I P L++ + I+++ V ++L +N+ +D Sbjct: 16 SIRYKLILHFLLISILPSLVIGLLMGWIVNGIVEKQVNGHTMQLIDN----VNKSLDYYA 71 Query: 70 -TVNKITTTVIQNPVLQQLHVSGSEPVMERVERYETIEKLLGS---YSQGAGRGDGIYYS 125 + I+ + NP +Q G E + + E Y + L G YS+ AG Sbjct: 72 GNIQNISYFISMNPDIQAFLSEGKEAIDDDHEEYRMSKFLQGFTSLYSEVAG-------- 123 Query: 126 LYVYDPDNYYFFAPNFPQVKKAGVYFFSTGEKPYWFDQVVQQKGRGYLMFAEKLSPQAEN 185 + V P+ YF + + + K W+ + V+ KG +F P N Sbjct: 124 IIVVRPNGDYFSNEMYARTNDSLA-------KESWYQEAVEAKG----IFKIIGHPANRN 172 Query: 186 LKT---------LTYVRAVNSIYRGAGTIGVLVVTKMESKIGESLKSIXXXXEGEIYLTD 236 + T ++ VRA+ T+GV+++ I E+++ + G + + D Sbjct: 173 VTTHSNYKDSEVVSVVRAIQD-PDTQKTLGVVLIDLKLRVIAETVRDVRLGKSGYLMVID 231 Query: 237 MNNQVLASTTNAT-GEV-IELPEGAETGDPEGTEDIITDDFIYVVNNNHAFAQKLVYKVP 294 + + + N+ G + + LP +G T FIY ++ + V+ Sbjct: 232 DKGESIYAPKNSKIGSLGVALPGRQVSGMFAQTVGGQKLQFIYQKSSFTNWTTVGVF--A 289 Query: 295 VKALLQQQKEMKRVIQYITVAYALFGLIIITYFWRSLMTPLQKLAFFVRKYEPGN---RV 351 V+ +Q+ K++ + + G+ Y S+ P+ +LA F+RK E GN R+ Sbjct: 290 VQDSVQEIKDINLYLVTFVFIVCMLGIAASYYLSHSISRPISQLASFMRKVEEGNMSIRI 349 Query: 352 PETPQRGTNDEVSVLIASTYDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLLYNT 411 PE + DE+ +L S M ++ LI + I PH LYNT Sbjct: 350 PEERE----DEIGLLGRSFNKMLSQMTRLISQVWAEQRLKREAELRSLQAHIQPHFLYNT 405 Query: 412 LESIYWKSSLEGNVESAEMIKELSKLMKISLSRGRELITLEEELEHASAYIKLQQHRYDY 471 L++I W + +G E+ EM++ LSKL +I LS+G+E+I L +E+EH +Y+K+QQ RY Sbjct: 406 LDTIQWLARKDGAKEATEMVEALSKLFRIGLSKGQEMIPLTDEIEHIRSYLKIQQTRYKD 465 Query: 472 VFTVIWNIAPETKTNLIPKITLQPLIENAIIHGVKNMAEDGEILITSVLQEDTILITIAD 531 + + K+ LQPL+ENAI HG+K G I I +++ E+ + + I D Sbjct: 466 KLNYNIEVDGSCDDLFVLKLILQPLVENAIYHGIKERRGPGMITIRAIISEEILELVIQD 525 Query: 532 NG 533 +G Sbjct: 526 DG 527 >B6FLW3.1 B6FLW3_9CLOT Putative uncharacterized protein Length = 620 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 109/358 (30%), Positives = 179/358 (50%), Gaps = 23/358 (6%) Query: 189 LTYVRAVNSIYRGAGTIGVLVVTKMESKIGESLKSIXXXXEGEIY-LTDMNNQVL----- 242 ++ RAV G +GVL+V S I +K I +G+ Y L D + Q++ Sbjct: 178 ISLSRAVEITDNGVSRMGVLLVDMDYSGIARMMKQINSANKGQYYYLCDGDGQIIYHPQQ 237 Query: 243 -----ASTTNATGEVIELPEGAETGDPEGTEDIITDDFIYVVNNNHAFAQKLVYKVPVKA 297 + ++ V + EG + EG + VVN KLV +P Sbjct: 238 IQIADGTRKESSQSVAKYKEGVYDEEFEGEHRKV------VVNTISYTGWKLVGVIPQTT 291 Query: 298 LLQQQKEMKRVIQYITVAYALFGLIIITYFWRSLMTPLQKLAFFVRKYEPGNRVPETPQR 357 + +++ I + + A+ +II + +P+ KL V +YE G E P+ Sbjct: 292 FVDGTIDIRYFIAMLMLLMAMMLMIINRIVSVRISSPILKLNHSVIEYEAG----EKPKI 347 Query: 358 --GTNDEVSVLIASTYDMARRLNSLIMYKYXXXXXXXXXXXXXXXXXINPHLLYNTLESI 415 G + E+ L S + +++ L+ INPH LYNTLESI Sbjct: 348 YIGGSTEIRHLGNSIQNSYEQIDMLMKKIVLEQNERRKSELDALQSQINPHFLYNTLESI 407 Query: 416 YWKSSLEGNVESAEMIKELSKLMKISLSRGRELITLEEELEHASAYIKLQQHRYDYVFTV 475 W E N E++ MI +L++L +ISLS+GR +I+++EEL+HA +Y+ +Q+ RY F+V Sbjct: 408 TWMIEGERNDEASFMITQLARLFRISLSKGRTVISIKEELQHAQSYMNIQKVRYKNTFSV 467 Query: 476 IWNIAPETKTNLIPKITLQPLIENAIIHGVKNMAEDGEILITSVLQEDTILITIADNG 533 I+++ PE I K+ LQP++ENAI +GV +M + GEI +T +Q + I++++ DNG Sbjct: 468 IFDVQPELYEYCIVKLVLQPILENAINYGVGSMDDCGEIKVTGRMQGENIILSVTDNG 525 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,889,446,589 Number of extensions: 119139293 Number of successful extensions: 321462 Number of sequences better than 1.0e-05: 1777 Number of HSP's gapped: 320051 Number of HSP's successfully gapped: 1777 Length of query: 533 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 392 Effective length of database: 1,732,333,088 Effective search space: 679074570496 Effective search space used: 679074570496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)