BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0020.p (272 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJZ8.1 B3KJZ8_9BACI Formate/nitrite transporter 371 e-101 C1FVF6.1 C1FVF6_CLOBJ Formate/nitrite transporter family protein 256 1e-66 C3L329.1 C3L329_CLOB6 Formate/nitrite transporter family protein 256 1e-66 B1QK57.1 B1QK57_CLOBO Formate/nitrite transporter family protein 256 1e-66 B1Q767.1 B1Q767_CLOBO Formate/nitrite transporter family protein 256 2e-66 >B3KJZ8.1 B3KJZ8_9BACI Formate/nitrite transporter Length = 262 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/260 (68%), Positives = 220/260 (84%) Query: 1 VFTQSVENIVETAAAKRDKMNESLPKYFLAALLAGAYVGIGIILIFSLGAPLAAVKSPFQ 60 +F VE +V A AK+++MN +L +Y ++A+LAGAYVGIGI+LIF LGAPLAA SPFQ Sbjct: 1 MFNNDVEAVVNAAVAKKEQMNNNLLRYMVSAMLAGAYVGIGIVLIFKLGAPLAAAGSPFQ 60 Query: 61 PLIMGTSFGIALTLVVFAGSELFTGNNMFFTVSTLAGRTSVWDTVKNWIIVFIGNVAGAV 120 L+MG +FGIALTLVVFAGSELFTGN+MFFT+STL+ RT++ DT+KNW +VFIGN+AGA+ Sbjct: 61 SLVMGAAFGIALTLVVFAGSELFTGNHMFFTISTLSKRTTMGDTLKNWGLVFIGNLAGAI 120 Query: 121 VLALLIRGTGLFSAAPAEHLIFTAAAKKMSLPFSELFFRGILCNWLVCLALWMASRAKSE 180 +L+ L+ +GLF P +HLIFTAAAKKM+ PF ELFFRGILCNWLVCLALWM RAK E Sbjct: 121 LLSYLVYASGLFKGLPPDHLIFTAAAKKMNDPFMELFFRGILCNWLVCLALWMGIRAKGE 180 Query: 181 TAKLVLIWWCLFAFIASGYEHSVANMTLLSVAVLLPNHPETVSLAGWFHNMIPVTLGNIV 240 T KL+LIWWCLFAFIA+GYEHSVANM+LL++A +LP HPETVS+ GW NM+PVTLGNI+ Sbjct: 181 TTKLILIWWCLFAFIATGYEHSVANMSLLTLATILPGHPETVSIGGWISNMVPVTLGNII 240 Query: 241 GGGVFVGMAYWLISPVRAAR 260 GGG+FVGMAYW IS + ++ Sbjct: 241 GGGLFVGMAYWFISSGKGSK 260 >C1FVF6.1 C1FVF6_CLOBJ Formate/nitrite transporter family protein Length = 254 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 132/255 (51%), Positives = 183/255 (71%), Gaps = 2/255 (0%) Query: 1 VFTQSVENIVETAAAKRDKMNESLPKYFLAALLAGAYVGIGIILIFSLGAPLAAVKSPFQ 60 ++++ + I A +KRD + + Y +++ LAG YVGIGIILIF+LG LA+V SP+ Sbjct: 1 MYSEEINKISNVAESKRDLLRNNKAGYLVSSALAGIYVGIGIILIFTLGGNLASVNSPYV 60 Query: 61 PLIMGTSFGIALTLVVFAGSELFTGNNMFFTVSTLAGRTSVWDTVKNWIIVFIGNVAGAV 120 LIMG SFGIAL+LV+ AGSELFTGNNM T+ TL +T+ DT+ W F+GN+ G++ Sbjct: 61 KLIMGLSFGIALSLVIMAGSELFTGNNMVMTIGTLNKKTTWKDTLSIWGFSFVGNLIGSM 120 Query: 121 VLALLIRGTGLFSAAPAEHLIFTAAAKKMSLPFSELFFRGILCNWLVCLALWMASRAKSE 180 +LAL+ GL A + ++ TA KM+LP ELF RG+LCN LVCLA+W + + + E Sbjct: 121 LLALIFVNAGLAEGAVGKFILKTAEI-KMTLPPMELFLRGLLCNILVCLAVWCSLKMREE 179 Query: 181 TAKLVLIWWCLFAFIASGYEHSVANMTLLSVAVLLPNHPETVSLAGWFHNMIPVTLGNIV 240 KL++I+WCLFAFI+SG+EHSVANMTLLS+A+ +P H VS++G +N+I V+LGNI+ Sbjct: 180 VGKLIMIFWCLFAFISSGFEHSVANMTLLSIALFIP-HGLGVSISGLAYNLIFVSLGNII 238 Query: 241 GGGVFVGMAYWLISP 255 GG +FVG AY+ IS Sbjct: 239 GGALFVGAAYYKISK 253 >C3L329.1 C3L329_CLOB6 Formate/nitrite transporter family protein Length = 254 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/255 (52%), Positives = 181/255 (70%), Gaps = 2/255 (0%) Query: 1 VFTQSVENIVETAAAKRDKMNESLPKYFLAALLAGAYVGIGIILIFSLGAPLAAVKSPFQ 60 ++++ + I A KRD + + Y +++ LAG YVGIGIILIF+LG LA+V SP+ Sbjct: 1 MYSEEINKISNVAENKRDLLRNNKVGYLVSSALAGIYVGIGIILIFTLGGNLASVNSPYV 60 Query: 61 PLIMGTSFGIALTLVVFAGSELFTGNNMFFTVSTLAGRTSVWDTVKNWIIVFIGNVAGAV 120 LIMG SFGIAL+LV+ AGSELFTGNNM T+ TL +T+ DT+ W F+GN+ G++ Sbjct: 61 KLIMGLSFGIALSLVIMAGSELFTGNNMVMTIGTLNKKTTWKDTLSIWGFSFVGNLIGSM 120 Query: 121 VLALLIRGTGLFSAAPAEHLIFTAAAKKMSLPFSELFFRGILCNWLVCLALWMASRAKSE 180 +LAL+ GL A + I AA KM+LP ELF RG+LCN LVCLA+W + + + E Sbjct: 121 LLALIFVNAGLAKGAVGK-FILKAAEIKMTLPPMELFLRGLLCNILVCLAVWCSLKMREE 179 Query: 181 TAKLVLIWWCLFAFIASGYEHSVANMTLLSVAVLLPNHPETVSLAGWFHNMIPVTLGNIV 240 KL++I+WCLFAFI+SG+EHSVANMTLLS+A+ +P H VS++G +N+I V+LGNI+ Sbjct: 180 AGKLIMIFWCLFAFISSGFEHSVANMTLLSIALFIP-HGLGVSISGLAYNLIFVSLGNII 238 Query: 241 GGGVFVGMAYWLISP 255 GG +FVG AY+ IS Sbjct: 239 GGALFVGSAYYKISK 253 >B1QK57.1 B1QK57_CLOBO Formate/nitrite transporter family protein Length = 254 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 133/255 (52%), Positives = 181/255 (70%), Gaps = 2/255 (0%) Query: 1 VFTQSVENIVETAAAKRDKMNESLPKYFLAALLAGAYVGIGIILIFSLGAPLAAVKSPFQ 60 ++++ + I A KRD + + Y +++ LAG YVGIGIILIF+LG LA+V SP+ Sbjct: 1 MYSEEINKISNVAENKRDLLRNNKVGYLVSSALAGIYVGIGIILIFTLGGNLASVNSPYV 60 Query: 61 PLIMGTSFGIALTLVVFAGSELFTGNNMFFTVSTLAGRTSVWDTVKNWIIVFIGNVAGAV 120 LIMG SFGIAL+LV+ AGSELFTGNNM T+ TL +T+ DT+ W F+GN+ G++ Sbjct: 61 KLIMGLSFGIALSLVIMAGSELFTGNNMVMTIGTLNKKTTWKDTLSIWGFSFVGNLIGSM 120 Query: 121 VLALLIRGTGLFSAAPAEHLIFTAAAKKMSLPFSELFFRGILCNWLVCLALWMASRAKSE 180 +LAL+ GL A + I AA KM+LP ELF RG+LCN LVCLA+W + + + E Sbjct: 121 LLALIFVNAGLAKGAVGK-FILKAAEIKMTLPPMELFLRGLLCNILVCLAVWCSLKMREE 179 Query: 181 TAKLVLIWWCLFAFIASGYEHSVANMTLLSVAVLLPNHPETVSLAGWFHNMIPVTLGNIV 240 KL++I+WCLFAFI+SG+EHSVANMTLLS+A+ +P H VS++G +N+I V+LGNI+ Sbjct: 180 AGKLIMIFWCLFAFISSGFEHSVANMTLLSIALFIP-HGLGVSISGLAYNLIFVSLGNII 238 Query: 241 GGGVFVGMAYWLISP 255 GG +FVG AY+ IS Sbjct: 239 GGALFVGSAYYKISK 253 >B1Q767.1 B1Q767_CLOBO Formate/nitrite transporter family protein Length = 254 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/255 (52%), Positives = 182/255 (71%), Gaps = 2/255 (0%) Query: 1 VFTQSVENIVETAAAKRDKMNESLPKYFLAALLAGAYVGIGIILIFSLGAPLAAVKSPFQ 60 ++++ + I A KRD + + Y +++ LAG YVGIGIILIF+LG LA+V SP+ Sbjct: 1 MYSEEINKISNVAENKRDLLRNNKVGYLVSSALAGIYVGIGIILIFTLGGNLASVNSPYV 60 Query: 61 PLIMGTSFGIALTLVVFAGSELFTGNNMFFTVSTLAGRTSVWDTVKNWIIVFIGNVAGAV 120 LIMG SFGIAL+LV+ AGSELFTGNNM T+ TL +T+ DT+ W F+GN+ G++ Sbjct: 61 KLIMGLSFGIALSLVIMAGSELFTGNNMVMTIGTLNKKTTWKDTLSIWGFSFVGNLIGSM 120 Query: 121 VLALLIRGTGLFSAAPAEHLIFTAAAKKMSLPFSELFFRGILCNWLVCLALWMASRAKSE 180 +LAL+ GL A + ++ TA KM+LP ELF RG+LCN LVCLA+W + + K E Sbjct: 121 LLALIFVNAGLAKGAVGKFILKTAEI-KMTLPPMELFLRGLLCNILVCLAVWCSLKMKEE 179 Query: 181 TAKLVLIWWCLFAFIASGYEHSVANMTLLSVAVLLPNHPETVSLAGWFHNMIPVTLGNIV 240 KL++I+WCLFAFI+SG+EHSVANMTLLS+A+ +P H VS++G +N+I V+LGNI+ Sbjct: 180 AGKLIMIFWCLFAFISSGFEHSVANMTLLSIALFIP-HGLGVSISGLAYNLIFVSLGNII 238 Query: 241 GGGVFVGMAYWLISP 255 GG +FVG AY+ IS Sbjct: 239 GGALFVGAAYYKISK 253 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,550,528,323 Number of extensions: 62623046 Number of successful extensions: 254868 Number of sequences better than 1.0e-05: 1269 Number of HSP's gapped: 251560 Number of HSP's successfully gapped: 1270 Length of query: 272 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 139 Effective length of database: 1,807,701,208 Effective search space: 251270467912 Effective search space used: 251270467912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)