BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0019.p
         (106 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJZ7.1 B3KJZ7_9BACI Nitrite reductase (NAD(P)H), small subunit      126   7e-28
A8FE14.1 A8FE14_BACP2 Nitrite reductase (NAD(P)H) small subunit ...   112   1e-23
B7IUD8.1 B7IUD8_BACC2 Nitrite reductase [NAD(P)H], small subunit...   106   8e-22
Q3ENF5.1 Q3ENF5_BACTI Nitrite reductase [NAD(P)H] small subunit ...   106   8e-22
C3IIT5.1 C3IIT5_BACTU Assimilatory nitrite reductase                  106   8e-22

>B3KJZ7.1 B3KJZ7_9BACI Nitrite reductase (NAD(P)H), small subunit
          Length = 105

 Score =  126 bits (316), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 1/104 (0%)

Query: 1   MKTATQEYAVGKTQDFLLQIGRVVVAGGVELAIFRTSDGEIHAIENRSPHPKGGPLAEGI 60
           M+T T    VG   +FL Q+GRVV  G  E+A+FRTSD +  A+EN+SPHPKGGPLAE I
Sbjct: 1   METGTY-ITVGNEHEFLSQLGRVVQIGDREIAVFRTSDHQWFALENKSPHPKGGPLAEAI 59

Query: 61  VSGSYLYDPLYDWKIDLRSGEVQAPDHGKVKVYPVELDGDRVKV 104
           VSG Y+YDPLYDWKI+L +G VQAPD G+V++YPV     +V+V
Sbjct: 60  VSGHYIYDPLYDWKIELSTGLVQAPDKGQVRIYPVRAVDGKVEV 103


>A8FE14.1 A8FE14_BACP2 Nitrite reductase (NAD(P)H) small subunit EC=1.7.1.4
          Length = 107

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 1   MKTATQEYAVGKTQDFLLQIGRVVVAGGVELAIFRTSDGEIHAIENRSPHPKGGPLAEGI 60
           M  +  +  +G   DF +Q+G+ V AG +ELA+F+TS  +  AIENR PH KGG LAEG+
Sbjct: 1   MTVSVVKVHIGTLSDFPMQLGKTVEAGTLELAVFQTSQQQFKAIENRCPH-KGGVLAEGM 59

Query: 61  VSGSYLYDPLYDWKIDLRSGEVQAPDHGKVKVYPVELDGDRVKVCL 106
           VSG Y++ P++DWKIDL SG VQAPD G VK Y   ++G+ V V L
Sbjct: 60  VSGDYVFCPMHDWKIDLSSGNVQAPDDGCVKTYETLVEGNEVFVLL 105


>B7IUD8.1 B7IUD8_BACC2 Nitrite reductase [NAD(P)H], small subunit EC=1.7.1.4
          Length = 105

 Score =  106 bits (264), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MKTATQEYAVGKTQDFLLQIGRVVVAGGVELAIFRTSDGEIHAIENRSPHPKGGPLAEGI 60
           M    ++  V + +D  +QIG+ V   G+ +A+FR S+G+I A+ENR PH K GPLAEGI
Sbjct: 1   MIQTKEKIKVMRAEDLPIQIGKEVQMNGMSIALFRLSNGDIRAVENRCPH-KNGPLAEGI 59

Query: 61  VSGSYLYDPLYDWKIDLRSGEVQAPDHGKVKVYPVE-LDGD 100
           VSG +++ PL+DWKI L +GEVQ PD G ++ Y VE +DGD
Sbjct: 60  VSGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVIDGD 100


>Q3ENF5.1 Q3ENF5_BACTI Nitrite reductase [NAD(P)H] small subunit EC=1.7.1.4
          Length = 105

 Score =  106 bits (264), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MKTATQEYAVGKTQDFLLQIGRVVVAGGVELAIFRTSDGEIHAIENRSPHPKGGPLAEGI 60
           M    ++  V + +D  +QIG+ V   G+ +A+FR S+G+I A+ENR PH K GPLAEGI
Sbjct: 1   MIQTKEKIKVMRAEDLPIQIGKEVQMNGMSIALFRLSNGDIRAVENRCPH-KNGPLAEGI 59

Query: 61  VSGSYLYDPLYDWKIDLRSGEVQAPDHGKVKVYPVE-LDGD 100
           VSG +++ PL+DWKI L +GEVQ PD G ++ Y VE +DGD
Sbjct: 60  VSGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVIDGD 100


>C3IIT5.1 C3IIT5_BACTU Assimilatory nitrite reductase
          Length = 105

 Score =  106 bits (264), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MKTATQEYAVGKTQDFLLQIGRVVVAGGVELAIFRTSDGEIHAIENRSPHPKGGPLAEGI 60
           M    ++  V + +D  +QIG+ V   G+ +A+FR S+G+I A+ENR PH K GPLAEGI
Sbjct: 1   MIQTKEKIKVMRAEDLPIQIGKEVQMNGMSIALFRLSNGDIRAVENRCPH-KNGPLAEGI 59

Query: 61  VSGSYLYDPLYDWKIDLRSGEVQAPDHGKVKVYPVE-LDGD 100
           VSG +++ PL+DWKI L +GEVQ PD G ++ Y VE +DGD
Sbjct: 60  VSGEFVFCPLHDWKISLLTGEVQKPDDGCIQTYEVEVIDGD 100


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 688,988,821
Number of extensions: 28372424
Number of successful extensions: 58102
Number of sequences better than 1.0e-05: 248
Number of HSP's gapped: 57997
Number of HSP's successfully gapped: 248
Length of query: 106
Length of database: 3,060,696,203
Length adjustment: 74
Effective length of query: 32
Effective length of database: 2,363,541,093
Effective search space: 75633314976
Effective search space used: 75633314976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)