BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0018.p (794 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJZ6.1 B3KJZ6_9BACI Nitrite reductase (NAD(P)H), large subunit 1154 0.0 P42435.1 NASD_BACSU Nitrite reductase [NAD(P)H] EC=1.7.1.4 921 0.0 A7Z174.1 A7Z174_BACA2 NasD EC=1.7.1.4 920 0.0 Q65NC4.1 Q65NC4_BACLD NasD 917 0.0 A8FE15.1 A8FE15_BACP2 Nitrite reductase (NAD(P)H) large subunit ... 877 0.0 >B3KJZ6.1 B3KJZ6_9BACI Nitrite reductase (NAD(P)H), large subunit Length = 804 Score = 1154 bits (2984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/793 (70%), Positives = 637/793 (80%), Gaps = 1/793 (0%) Query: 1 MAGVGTVEQILKLGGAYDITVFGSEPHPNYNRIMLSYVLEGSKTIEEIVLNDRQWYADHN 60 +AG+ TVEQI+KLGG +DITV G EPHPNYNRIMLSYVLEGSKT+++IVLND +WY D+ Sbjct: 8 IAGISTVEQIIKLGGKFDITVIGQEPHPNYNRIMLSYVLEGSKTLDDIVLNDWKWYEDNQ 67 Query: 61 ITLHTGTTVVRIDEAARQIITDNGMSVPFDKAIIATGSNSFILPVPGSDKEGVVGFRXXX 120 ITLHTG TV ID + + DNG++VP+DK IIATGS FILPVPGSDKEGV+GFR Sbjct: 68 ITLHTGVTVTAIDGERKVVTADNGLTVPYDKVIIATGSKPFILPVPGSDKEGVIGFRNIA 127 Query: 121 XXXXXXXXXKTYRTXXXXXXXXXXXXXXXXXVNLGMDVTVVHLLEDLMERQLDHNASAML 180 K Y+ V+LGM+VTVVHL++DLME QLD AS ML Sbjct: 128 DCTQMLQAAKAYKKAAVIGGGLLGLEAAKGLVSLGMEVTVVHLMQDLMESQLDSMASGML 187 Query: 181 QAELARQGVKFAMGKQTVELTGDERVNGLRFSDGTELAADFVVMAVGIKPNTQLARESGI 240 Q EL RQG++F +GKQT E+ GDERV GLRF DG EL A+ VVMAVGI+ N A+ SGI Sbjct: 188 QRELERQGIRFLLGKQTTEIMGDERVTGLRFKDGDELEAELVVMAVGIRANVAAAQASGI 247 Query: 241 TVNRGIVVDDYLQTSIPGVYSVGECTEHRGTCYGLVAPLFEQGSVLAKHLCGVPTQPYEG 300 VNRGIVV+DYLQTS P VY+VGEC EHRG CYGLVAPLFEQG VLAKHLCGV QPYEG Sbjct: 248 EVNRGIVVNDYLQTSWPDVYAVGECCEHRGACYGLVAPLFEQGQVLAKHLCGVDGQPYEG 307 Query: 301 SVVATKLKISGVDVFSAGEFTETAEHTVISAKDEWKRTYKKILLKNNIIVGAVLFGDVTE 360 S+V+TKLKISGVDVFSAGEF E A+H+VI AKD+W++TYKKILL++NIIVGA+LFGDV++ Sbjct: 308 SIVSTKLKISGVDVFSAGEFMEQADHSVIVAKDDWRKTYKKILLRDNIIVGAILFGDVSD 367 Query: 361 SANLQKLVKQGAEMTDEIYSEVMXXXXXXXXXXXXXLSVETMADEEIVCGCNGVTKKAIV 420 SA+LQ ++++ MT+EIY ++ S++ M D+EIVCGCNGVTKKAIV Sbjct: 368 SASLQSMIRKKTAMTEEIYHSIIGTECASKGNGKA-FSLDKMPDDEIVCGCNGVTKKAIV 426 Query: 421 DAVTENGFTTVDEIKACTGATRSCGGCKPVVEQILQFVLGDSFQQGAKQGICGCTTLSRD 480 DAVT TTVDEIKACTGATRSCGGCKPVVEQILQ VLGD F+ KQGIC CTTL RD Sbjct: 427 DAVTLQSLTTVDEIKACTGATRSCGGCKPVVEQILQSVLGDGFKTAGKQGICPCTTLDRD 486 Query: 481 EIVAEITAKGLKTTKEVMNVLGWKQAEGCSKCRPAVNYYLGMLYPDTHEDEKESRFVNER 540 EIVAEI+AKGL TTKEVM+VL + EGCSKCRPA++YYL ML P TH++E+ESRFVNER Sbjct: 487 EIVAEISAKGLTTTKEVMHVLNFSNPEGCSKCRPAIHYYLAMLNPVTHQEERESRFVNER 546 Query: 541 MSANIQKDGTFTVVPRMYGGVTTPEDLKRIADVSLKYDVKVVKVTGGQRLDLIGVKKEDV 600 M+ANIQKDGT+TVVPRMYGGVTTPEDLK+IADVSLKY+VKVVKVTGGQRLDLIGVKKED+ Sbjct: 547 MNANIQKDGTYTVVPRMYGGVTTPEDLKKIADVSLKYNVKVVKVTGGQRLDLIGVKKEDL 606 Query: 601 PKVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGALLERKYERLDFPAKFKM 660 P VWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGA LE K+ERLDFPAKFKM Sbjct: 607 PSVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGAFLEEKFERLDFPAKFKM 666 Query: 661 AVNGCPRNCAESCTKDIGIVGNDXXXXXXXXXXXXXKPRIADSFCKVKTDEELIEVCSAV 720 AVNGCPRNCAESCTKDIGIVGND K R+ADSFCKVKTDEELIE+C A+ Sbjct: 667 AVNGCPRNCAESCTKDIGIVGNDGGWEIFVGGNGGTKARLADSFCKVKTDEELIEICGAL 726 Query: 721 MQYYRETGNYLERTSEWVERIGLEQIQRVILDNEDNRKELAARIDFALAQVSDPWKKMLD 780 MQYYRETG YLERTSEWVER+GLEQI+ +LD+ RKEL RI+ AL QV DPWKK+L+ Sbjct: 727 MQYYRETGKYLERTSEWVERLGLEQIRAAVLDDAKQRKELVERIELALQQVEDPWKKVLN 786 Query: 781 DQETRTALFEQTR 793 D + R LF+ R Sbjct: 787 DDKLRNTLFQDAR 799 >P42435.1 NASD_BACSU Nitrite reductase [NAD(P)H] EC=1.7.1.4 Length = 805 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/793 (56%), Positives = 563/793 (70%), Gaps = 7/793 (0%) Query: 1 MAGVGTVEQILKLG-GAYDITVFGSEPHPNYNRIMLSYVLEGSKTIEEIVLNDRQWYADH 59 MAGV +E+IL + + IT+FG+EPHPNYNRI+LS VL+G I++I LND WY ++ Sbjct: 13 MAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKDITLNDWDWYEEN 72 Query: 60 NITLHTGTTVVRIDEAARQIITDNGMSVPFDKAIIATGSNSFILPVPGSDKEGVVGFRXX 119 NI L+T TV+++D + +ITD P+D+ I+ATGS FILP+PG+DK+GV FR Sbjct: 73 NIQLYTNETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADKKGVTAFRDI 132 Query: 120 XXXXXXXXXXKTYRTXXXXXXXXXXXXXXXXXVNLGMDVTVVHLLEDLMERQLDHNASAM 179 K Y+ +NLGMDV+V+HL LMERQLD A + Sbjct: 133 KDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLMERQLDATAGRL 192 Query: 180 LQAELARQGVKFAMGKQTVELTGDERVNGLRFSDGTELAADFVVMAVGIKPNTQLARESG 239 LQ EL +QG+ F + KQT E+ GD+RV GLRF DGT + AD VVMAVGI+PNT L ESG Sbjct: 193 LQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVGIRPNTTLGAESG 252 Query: 240 ITVNRGIVVDDYLQTSIPGVYSVGECTEHRGTCYGLVAPLFEQGSVLAKHLCGVPTQPYE 299 I VNRGI+V+DY+QT IP +Y+VGEC EHRG YGLVAPL+EQ VLAKH+CG+ T+PYE Sbjct: 253 IPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYE 312 Query: 300 GSVVATKLKISGVDVFSAGEFTETAEHTVISAKDEWKRTYKKILLKNNIIVGAVLFGDVT 359 GSV++T+LK+SGV+VFSAG+F E+ E I DE YKKI+L+ N IVGAVLFGD + Sbjct: 313 GSVLSTQLKVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSS 372 Query: 360 ESANLQKLVKQGAEMTDEIYSEVMXXXXXXXXXXXXXLSVETMADEEIVCGCNGVTKKAI 419 E L ++++ A++++ ++ M+D+EI+CGCNGV+K AI Sbjct: 373 EGNRLFSMIQKEADISETSKISILQPLSQEAGTSITA----AMSDDEIICGCNGVSKGAI 428 Query: 420 VDAVTENGFTTVDEIKACTGATRSCGGCKPVVEQILQFVLGDSFQQGA-KQGICGCTTLS 478 + A+ E G ++ DEIKACTGA+RSCGGCKP+VE+ILQ LG F A K+ ICGCTTLS Sbjct: 429 IQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQKEAICGCTTLS 488 Query: 479 RDEIVAEITAKGLKTTKEVMNVLGWKQAEGCSKCRPAVNYYLGMLYPDTHEDEKESRFVN 538 RDE+V EI AKGL T+EVMNVLGWK EGCSKCRPA+NYYLGM+ P +ED++ SRFVN Sbjct: 489 RDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVN 548 Query: 539 ERMSANIQKDGTFTVVPRMYGGVTTPEDLKRIADVSLKYDVKVVKVTGGQRLDLIGVKKE 598 ERM ANIQKDGT++VVPRMYGGVT DL++IADV KY++ +VK+TGGQR+DLIGVKKE Sbjct: 549 ERMHANIQKDGTYSVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKE 608 Query: 599 DVPKVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGALLERKYERLDFPAKF 658 D+PKVWE+LDMPSGYAY K+LRTVKTCVG QFCRFGTQDSM +G LE+K+E L+ P K Sbjct: 609 DLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLNTPHKV 668 Query: 659 KMAVNGCPRNCAESCTKDIGIVGNDXXXXXXXXXXXXXKPRIADSFCKVKTDEELIEVCS 718 KMAV+ CPRNCAES KD+G+VG D R D KVKT+EE++E Sbjct: 669 KMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNEEVLEYAG 728 Query: 719 AVMQYYRETGNYLERTSEWVERIGLEQIQRVILDNEDNRKELAARIDFALAQVSDPWKKM 778 A +QYYRET NYLERTS W+ER+GL +Q V+ D E R+EL R++ L+ DPWK Sbjct: 729 AYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPE-KRQELNGRMNETLSVHKDPWKDF 787 Query: 779 LDDQETRTALFEQ 791 L+D++T LFE Sbjct: 788 LEDKQTSKELFEN 800 >A7Z174.1 A7Z174_BACA2 NasD EC=1.7.1.4 Length = 805 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/792 (55%), Positives = 566/792 (71%), Gaps = 7/792 (0%) Query: 1 MAGVGTVEQILKLG-GAYDITVFGSEPHPNYNRIMLSYVLEGSKTIEEIVLNDRQWYADH 59 MAGV +E+IL++ ++IT+FG+EPHPNYNRI+LS VL+G I++I LND WY ++ Sbjct: 13 MAGVRAIEEILRVSKDEFEITIFGAEPHPNYNRILLSKVLQGDTDIQDITLNDWNWYKEN 72 Query: 60 NITLHTGTTVVRIDEAARQIITDNGMSVPFDKAIIATGSNSFILPVPGSDKEGVVGFRXX 119 NI L+TG TV+++D + +ITD P+D+ I+ATGS FILP+PG+DK+GV FR Sbjct: 73 NIQLYTGETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADKQGVTAFRDI 132 Query: 120 XXXXXXXXXXKTYRTXXXXXXXXXXXXXXXXXVNLGMDVTVVHLLEDLMERQLDHNASAM 179 K Y+ +NLGMDV+V+HL LMERQLD A + Sbjct: 133 KDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLMERQLDAAAGRL 192 Query: 180 LQAELARQGVKFAMGKQTVELTGDERVNGLRFSDGTELAADFVVMAVGIKPNTQLARESG 239 LQ EL +QG+ F + KQT E+ G +RV G+RF DGT + AD VVMAVGI+PNTQL ESG Sbjct: 193 LQNELEKQGMTFFLEKQTEEILGTDRVEGVRFKDGTSIEADLVVMAVGIRPNTQLGTESG 252 Query: 240 ITVNRGIVVDDYLQTSIPGVYSVGECTEHRGTCYGLVAPLFEQGSVLAKHLCGVPTQPYE 299 I VNRGI+V+DY+QT IP +Y+VGEC EHRG YGLVAPL+EQ VLAKHLCG+ T+PYE Sbjct: 253 IPVNRGIIVNDYMQTDIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKHLCGIETKPYE 312 Query: 300 GSVVATKLKISGVDVFSAGEFTETAEHTVISAKDEWKRTYKKILLKNNIIVGAVLFGDVT 359 GSV++T+LK+SGV+VFSAG+F E+ + I DE YKKI+L+ N IVGAVLFGD + Sbjct: 313 GSVLSTQLKVSGVEVFSAGDFNESEDKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSS 372 Query: 360 ESANLQKLVKQGAEMTDEIYSEVMXXXXXXXXXXXXXLSVETMADEEIVCGCNGVTKKAI 419 E + L ++++ A++++ ++ M+D+EI+CGCNGV+K AI Sbjct: 373 EGSRLFSMIQKEADISETSKISILQPLDQEAGASMTA----AMSDDEIICGCNGVSKGAI 428 Query: 420 VDAVTENGFTTVDEIKACTGATRSCGGCKPVVEQILQFVLGDSFQQGA-KQGICGCTTLS 478 + A+ E G T+ DEIKACTGA+RSCGGCKP+VE ILQ+ LG F A K+ ICGCT+LS Sbjct: 429 IQAIQEKGCTSTDEIKACTGASRSCGGCKPLVEDILQYTLGSEFDASAQKEAICGCTSLS 488 Query: 479 RDEIVAEITAKGLKTTKEVMNVLGWKQAEGCSKCRPAVNYYLGMLYPDTHEDEKESRFVN 538 RDE+V EI AKGL T+E+MNVLGWK EGCSKCRPA+NYYLGM+ P T+ED++ SRFVN Sbjct: 489 RDEVVEEIKAKGLSHTREIMNVLGWKTPEGCSKCRPALNYYLGMINPATYEDDRTSRFVN 548 Query: 539 ERMSANIQKDGTFTVVPRMYGGVTTPEDLKRIADVSLKYDVKVVKVTGGQRLDLIGVKKE 598 ERM ANIQKDGT++VVPRMYGGVT +DL++IADV KY++ +VK+TGGQR+DLIGVKKE Sbjct: 549 ERMHANIQKDGTYSVVPRMYGGVTNSQDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKE 608 Query: 599 DVPKVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGALLERKYERLDFPAKF 658 D+PKVW ELDMPSGYAY K+LRTVKTCVG QFCRFGTQDSM +G LE+K+E L+ P K Sbjct: 609 DLPKVWAELDMPSGYAYGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLNTPHKV 668 Query: 659 KMAVNGCPRNCAESCTKDIGIVGNDXXXXXXXXXXXXXKPRIADSFCKVKTDEELIEVCS 718 KMAV+ CPRNCAES KD+G+VG D R D KVKT+EE++E Sbjct: 669 KMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNEEVLEYAG 728 Query: 719 AVMQYYRETGNYLERTSEWVERIGLEQIQRVILDNEDNRKELAARIDFALAQVSDPWKKM 778 A +QYYRET NYLERTS W+ER+GL +Q V+ D E R+EL R++ L+ DPW+ Sbjct: 729 AYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPE-KRQELNDRMNETLSVHKDPWQYF 787 Query: 779 LDDQETRTALFE 790 L D++ LFE Sbjct: 788 LKDKKASKDLFE 799 >Q65NC4.1 Q65NC4_BACLD NasD Length = 806 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/795 (56%), Positives = 561/795 (70%), Gaps = 9/795 (1%) Query: 1 MAGVGTVEQILKLGGA-YDITVFGSEPHPNYNRIMLSYVLEGSKTIEEIVLNDRQWYADH 59 MAGV +E+ILK+ + IT+FGSEPHPNYNRI+LS VL+G +++I LND WY ++ Sbjct: 13 MAGVRAIEEILKISNEEFQITIFGSEPHPNYNRILLSKVLQGDTDVKDITLNDWDWYEEN 72 Query: 60 NITLHTGTTVVRIDEAARQIITDNGMSVPFDKAIIATGSNSFILPVPGSDKEGVVGFRXX 119 I L+TG VV++D ++ +ITD G P+D+ I+ATGS FILP+PG+DKEGV FR Sbjct: 73 GIQLYTGEEVVKVDPESKTVITDTGRVQPYDELILATGSLPFILPLPGADKEGVTAFRDI 132 Query: 120 XXXXXXXXXXKTYRTXXXXXXXXXXXXXXXXXVNLGMDVTVVHLLEDLMERQLDHNASAM 179 KTY+ +NLGMDVTVVHL LMERQLD A + Sbjct: 133 KDTDIMLEASKTYKKAAVIGGGLLGLEAARGLLNLGMDVTVVHLAPYLMERQLDAAAGRL 192 Query: 180 LQAELARQGVKFAMGKQTVELTGDERVNGLRFSDGTELAADFVVMAVGIKPNTQLARESG 239 LQ EL +QG+KF + KQT E+ G+ RV GL+F DG+ L AD VVMAVGIKPN QL ++ G Sbjct: 193 LQKELEKQGMKFLLEKQTEEIYGETRVEGLKFKDGSTLEADLVVMAVGIKPNVQLGKDCG 252 Query: 240 ITVNRGIVVDDYLQTSIPGVYSVGECTEHRGTCYGLVAPLFEQGSVLAKHLCGVPTQPYE 299 + VNRGIVV+DY++T +P +Y+VGEC EHRG YGLVAPL+EQ VLAK +CGV T PYE Sbjct: 253 LPVNRGIVVNDYMETEVPNIYAVGECAEHRGIAYGLVAPLYEQAKVLAKKICGVETAPYE 312 Query: 300 GSVVATKLKISGVDVFSAGEFTET--AEHTVISAKDEWKRTYKKILLKNNIIVGAVLFGD 357 GSV++T+LK+SGV+VFSAG+F E + + DE YKKI+L+ N ++GAVLFGD Sbjct: 313 GSVLSTQLKVSGVEVFSAGDFNEDDGEDKKALKVFDEQDGIYKKIVLRGNQVIGAVLFGD 372 Query: 358 VTESANLQKLVKQGAEMTDEIYSEVMXXXXXXXXXXXXXLSVETMADEEIVCGCNGVTKK 417 +E L ++++GA+++D ++ M+D+EIVCGCNGV+K Sbjct: 373 SSEGNRLFSMIQKGADISDTSKISILQPLNQEEGMSLTA----AMSDDEIVCGCNGVSKG 428 Query: 418 AIVDAVTENGFTTVDEIKACTGATRSCGGCKPVVEQILQFVLGDSFQQGA-KQGICGCTT 476 I+ A+ E G T+ DEIKACTGA+RSCGGCKP+V +ILQ LG F A K+ ICGCT Sbjct: 429 MIIQAIKEQGCTSTDEIKACTGASRSCGGCKPLVAEILQHTLGSEFDASAQKEAICGCTD 488 Query: 477 LSRDEIVAEITAKGLKTTKEVMNVLGWKQAEGCSKCRPAVNYYLGMLYPDTHEDEKESRF 536 LSRDE+VAEI KGL TKEVMNVLGWK AEGCSKCRPA+NYYLGM+ P +EDE+ESRF Sbjct: 489 LSRDELVAEIREKGLTHTKEVMNVLGWKTAEGCSKCRPALNYYLGMINPKEYEDERESRF 548 Query: 537 VNERMSANIQKDGTFTVVPRMYGGVTTPEDLKRIADVSLKYDVKVVKVTGGQRLDLIGVK 596 VNERM ANIQKDGT++VVPRMYGGVT DL+RIADV KY++ +VK+TGGQR+DLIGVK Sbjct: 549 VNERMHANIQKDGTYSVVPRMYGGVTNSNDLRRIADVVDKYEIPLVKMTGGQRIDLIGVK 608 Query: 597 KEDVPKVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGALLERKYERLDFPA 656 KED+PKVW +LDMPSG+AY K+LRTVKTCVG QFCRFGTQDSM +G LE+K+E L P Sbjct: 609 KEDLPKVWADLDMPSGFAYGKTLRTVKTCVGEQFCRFGTQDSMALGIDLEKKFEGLYTPH 668 Query: 657 KFKMAVNGCPRNCAESCTKDIGIVGNDXXXXXXXXXXXXXKPRIADSFCKVKTDEELIEV 716 K KMAV+ CPRNCAES KDIG+VG D R D KVKT EE+IE+ Sbjct: 669 KIKMAVSACPRNCAESGIKDIGVVGIDGGWEIYVGGNGGTHLRAGDLLMKVKTAEEVIEI 728 Query: 717 CSAVMQYYRETGNYLERTSEWVERIGLEQIQRVILDNEDNRKELAARIDFALAQVSDPWK 776 A +QYYRET NYLERTS W+ER+GL +Q V+ D E RKEL RI+ AL+ DPWK Sbjct: 729 TGAYLQYYRETANYLERTSAWIERVGLSHVQSVLNDKE-KRKELNDRINQALSVHKDPWK 787 Query: 777 KMLDDQETRTALFEQ 791 L+D +T LFE Sbjct: 788 DFLEDGKTTRQLFEN 802 >A8FE15.1 A8FE15_BACP2 Nitrite reductase (NAD(P)H) large subunit EC=1.7.1.4 Length = 806 Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/793 (52%), Positives = 557/793 (70%), Gaps = 8/793 (1%) Query: 1 MAGVGTVEQILKLGGA-YDITVFGSEPHPNYNRIMLSYVLEGSKTIEEIVLNDRQWYADH 59 MAG+ ++E ILK+ +++TVFGSEPHPNYNRI+LS VL+G +E+I LND WY H Sbjct: 12 MAGIRSIENILKMDSERFEMTVFGSEPHPNYNRILLSKVLQGDTMVEDITLNDWNWYEAH 71 Query: 60 NITLHTGTTVVRIDEAARQIITDNGMSVPFDKAIIATGSNSFILPVPGSDKEGVVGFRXX 119 +I L T T+V++D + + +D G +VP+D+ I+ATGS FILP+PGSDK+GV GFR Sbjct: 72 DIQLFTNETIVKVDTENQTVTSDQGRTVPYDRLILATGSLPFILPIPGSDKKGVTGFRTL 131 Query: 120 XXXXXXXXXXKTYRTXXXXXXXXXXXXXXXXXVNLGMDVTVVHLLEDLMERQLDHNASAM 179 Y+ +NLGM+V V+HL LMERQLD A + Sbjct: 132 QDTEEMVSASHKYKKAAVIGGGLLGLEAARGLLNLGMEVNVIHLCPHLMERQLDPTAGQL 191 Query: 180 LQAELARQGVKFAMGKQTVELTGDERVNGLRFSDGTELAADFVVMAVGIKPNTQLARESG 239 LQ L QG+ F +GK+T E+ GD RV GL FSDG+ L D VVMAVGIKP+ LA SG Sbjct: 192 LQKALEEQGMNFLLGKKTTEILGDTRVEGLSFSDGSTLETDLVVMAVGIKPSKMLAEISG 251 Query: 240 ITVNRGIVVDDYLQTSIPGVYSVGECTEHRGTCYGLVAPLFEQGSVLAKHLCGVPTQPYE 299 + VN+GI+V+D+++TS+PG+Y+VGEC EHRG YGLVAPL++Q +VLA H+C + PY+ Sbjct: 252 LEVNKGIIVNDFMETSVPGIYAVGECVEHRGQTYGLVAPLYDQANVLAGHICDMNPAPYK 311 Query: 300 GSVVATKLKISGVDVFSAGEFTETAEHTVISAKDEWKRTYKKILLKNNIIVGAVLFGDVT 359 GSV++T+LK+SGVDVFSAG+F E E I D+ K Y+K++ + N +VGAV+FG+ + Sbjct: 312 GSVMSTQLKVSGVDVFSAGDFIENDEKKAIKIFDDQKGIYQKLVFQQNRLVGAVMFGETS 371 Query: 360 ESANLQKLVKQGAEMTDEIYSEVMXXXXXXXXXXXXXLSVETMADEEIVCGCNGVTKKAI 419 + L +++G +M+D+ V+ ++E+M+++ IVCGCNGV+K I Sbjct: 372 DGPRLFSYIRKGIDMSDKEKVSVLTSNDPAQES-----TIESMSNDHIVCGCNGVSKGQI 426 Query: 420 VDAVTENGFTTVDEIKACTGATRSCGGCKPVVEQILQFVLGDSFQQGA-KQGICGCTTLS 478 V+A+ + G TT+ E+K CT A+RSCGGCKPVVE+IL LGD + A K+ IC CTTLS Sbjct: 427 VEAIQKEGLTTLQEVKQCTSASRSCGGCKPVVEEILWHTLGDGANRTAQKETICACTTLS 486 Query: 479 RDEIVAEITAKGLKTTKEVMNVLGWKQAEGCSKCRPAVNYYLGMLYPDTHEDEKESRFVN 538 RDE++ EI KGL+ KEVM+VL W+ EGCSKCRPA+NYYLGML P ++DE+ SR+VN Sbjct: 487 RDEVIHEIKEKGLQHIKEVMSVLDWETEEGCSKCRPALNYYLGMLQPLEYKDERSSRYVN 546 Query: 539 ERMSANIQKDGTFTVVPRMYGGVTTPEDLKRIADVSLKYDVKVVKVTGGQRLDLIGVKKE 598 ER+ ANIQKDGT++VVPRMYGGVT DL++IADV KY++ +VK+TGGQR+DL+GVKKE Sbjct: 547 ERLHANIQKDGTYSVVPRMYGGVTNANDLRKIADVVDKYEIPLVKMTGGQRIDLLGVKKE 606 Query: 599 DVPKVWEELDMPSGYAYAKSLRTVKTCVGSQFCRFGTQDSMGMGALLERKYERLDFPAKF 658 D+PKVWE+LDMPSGYAY KSLRTVKTCVG QFCRFGTQDSM +G LE+K+E L P K Sbjct: 607 DLPKVWEDLDMPSGYAYGKSLRTVKTCVGEQFCRFGTQDSMALGIALEKKFEGLATPHKV 666 Query: 659 KMAVNGCPRNCAESCTKDIGIVGNDXXXXXXXXXXXXXKPRIADSFCKVKTDEELIEVCS 718 K+AV+ CPRNCAES KD+GIVG + R D KV T EE+ +V + Sbjct: 667 KLAVSACPRNCAESGIKDLGIVGIEGGFELYAGGNGGTHLRAGDLLMKVSTAEEVEQVAA 726 Query: 719 AVMQYYRETGNYLERTSEWVERIGLEQIQRVILDNEDNRKELAARIDFALAQVSDPWKKM 778 A +QYYRET NYLERTS WVER+GL+ IQ V+LD+E R+ L R+D AL+ +PW+++ Sbjct: 727 AYLQYYRETANYLERTSAWVERLGLDHIQSVLLDDE-KREALIQRMDIALSTYDEPWQEL 785 Query: 779 LDDQETRTALFEQ 791 + Q+ LF++ Sbjct: 786 RESQKATKQLFQK 798 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,284,331,167 Number of extensions: 169562454 Number of successful extensions: 458575 Number of sequences better than 1.0e-05: 3077 Number of HSP's gapped: 452625 Number of HSP's successfully gapped: 3345 Length of query: 794 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 650 Effective length of database: 1,704,070,043 Effective search space: 1107645527950 Effective search space used: 1107645527950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)