BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0016.p (243 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3F5L2.1 C3F5L2_BACTU Putative uncharacterized protein 239 2e-61 C2XT99.1 C2XT99_BACCE Putative uncharacterized protein 238 3e-61 C3ASX4.1 C3ASX4_BACMY Putative uncharacterized protein 237 7e-61 C2PVA5.1 C2PVA5_BACCE Putative uncharacterized protein 237 8e-61 C2QBD7.1 C2QBD7_BACCE Putative uncharacterized protein 236 2e-60 >C3F5L2.1 C3F5L2_BACTU Putative uncharacterized protein Length = 235 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/226 (50%), Positives = 148/226 (65%), Gaps = 1/226 (0%) Query: 17 FSGEAMVRDIVLQFPKAADYFKAQRIDFCCGGAKPLVEAAAEKGLDTGAVLQDLNKLLAE 76 F+ +++ DIV QFPKA+D FK+ RIDFCCGG +PL++A E+ L VL LN L E Sbjct: 5 FTETSIIGDIVTQFPKASDLFKSYRIDFCCGGNRPLIDAINERNLSAVEVLTKLNALYHE 64 Query: 77 HPVLEEDSA-WNEASSEELADYIINKHHRYLREELPLIAQNVTKVFRVHGEDSPHLAEVY 135 +L E W AS EL DY++NKHHRYL EELPL++ VTKV RVHG D PHLA+++ Sbjct: 65 TKLLNESEIDWKTASYRELIDYVVNKHHRYLNEELPLLSPYVTKVLRVHGADQPHLAQIH 124 Query: 136 RLFHTLRXXXXXXXXXXXXXXFPKMLAYEKNPTEDXXXXXXXXXXXXXAEHDGAGDILRE 195 +LFH L+ FP +LA+++NPT++ EH AG+I++E Sbjct: 125 KLFHELKTELEQHLIKEETEDFPLILAFKQNPTDENYTKLRKVVDELENEHSHAGNIIKE 184 Query: 196 LRRVTNDYTPPEHACTTYRLTYARLEELEGMTFEHVHLENNILFLR 241 LR+VTND+TPPE AC TYRL Y RLE LE F+H+HLENNILF R Sbjct: 185 LRKVTNDFTPPEDACGTYRLVYQRLEALESDLFQHIHLENNILFPR 230 >C2XT99.1 C2XT99_BACCE Putative uncharacterized protein Length = 235 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 112/226 (49%), Positives = 150/226 (66%), Gaps = 1/226 (0%) Query: 17 FSGEAMVRDIVLQFPKAADYFKAQRIDFCCGGAKPLVEAAAEKGLDTGAVLQDLNKLLAE 76 F+ +++ +IV QFPKA+D FK+ RIDFCCGG++PL++A E+ L V+ +LN L Sbjct: 5 FTETSIIGEIVTQFPKASDLFKSYRIDFCCGGSRPLIDAINERNLSVTEVITELNTLYNN 64 Query: 77 HPVLEEDSA-WNEASSEELADYIINKHHRYLREELPLIAQNVTKVFRVHGEDSPHLAEVY 135 +L E W AS +EL DY++NKHHRYL EELP ++ VTKV RVHG PHLA+++ Sbjct: 65 TKLLNESEIDWKNASYQELIDYVVNKHHRYLNEELPQLSPYVTKVLRVHGASQPHLAQIH 124 Query: 136 RLFHTLRXXXXXXXXXXXXXXFPKMLAYEKNPTEDXXXXXXXXXXXXXAEHDGAGDILRE 195 +LFH L+ FP +LA+E+NPT++ +EHD AG+I++E Sbjct: 125 KLFHELKIELEQHLIKEETEDFPLILAFEQNPTDENYAKLRIVVDKLESEHDHAGNIIKE 184 Query: 196 LRRVTNDYTPPEHACTTYRLTYARLEELEGMTFEHVHLENNILFLR 241 LR+VTND+TPPE AC TYRL Y RLE +E FEH+HLENNILF R Sbjct: 185 LRKVTNDFTPPEGACGTYRLVYQRLEAIESDLFEHIHLENNILFPR 230 >C3ASX4.1 C3ASX4_BACMY Putative uncharacterized protein Length = 235 Score = 237 bits (604), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 148/226 (65%), Gaps = 1/226 (0%) Query: 17 FSGEAMVRDIVLQFPKAADYFKAQRIDFCCGGAKPLVEAAAEKGLDTGAVLQDLNKLLAE 76 F+ ++++ DIV QFPKA+D FK+ RIDFCCGG +P+++A E+ L + +L LN L E Sbjct: 5 FTEDSVIGDIVTQFPKASDLFKSYRIDFCCGGNRPIIDAINERNLSSEEILTKLNTLYHE 64 Query: 77 HPVLEEDSA-WNEASSEELADYIINKHHRYLREELPLIAQNVTKVFRVHGEDSPHLAEVY 135 L E W AS EL DYI+NKHHRYL EELPL++ VTKV RVHG PHLA+++ Sbjct: 65 TKQLNESEIDWKTASYSELIDYIVNKHHRYLNEELPLLSPYVTKVLRVHGAGQPHLAQIH 124 Query: 136 RLFHTLRXXXXXXXXXXXXXXFPKMLAYEKNPTEDXXXXXXXXXXXXXAEHDGAGDILRE 195 +LFH L+ FP +LA+E+NPT++ EH+ AGDI++E Sbjct: 125 KLFHELKTELEQHLIKEETEDFPLILAFEQNPTDENYMKLRKVVDELENEHNHAGDIIKE 184 Query: 196 LRRVTNDYTPPEHACTTYRLTYARLEELEGMTFEHVHLENNILFLR 241 LR+VTND+TPP AC TYRL Y RLE LE FEH+HLENN+LF R Sbjct: 185 LRKVTNDFTPPVGACGTYRLVYQRLEALESDLFEHIHLENNVLFPR 230 >C2PVA5.1 C2PVA5_BACCE Putative uncharacterized protein Length = 235 Score = 237 bits (604), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 113/226 (50%), Positives = 149/226 (65%), Gaps = 1/226 (0%) Query: 17 FSGEAMVRDIVLQFPKAADYFKAQRIDFCCGGAKPLVEAAAEKGLDTGAVLQDLNKLLAE 76 F+ +++ +IV QFPKA+D FK+ RIDFCCGG +PL++A E+ L V+ +LN L + Sbjct: 5 FTETSIIGEIVTQFPKASDLFKSYRIDFCCGGNRPLIDAINERNLSASEVITELNTLYHK 64 Query: 77 HPVLEEDSA-WNEASSEELADYIINKHHRYLREELPLIAQNVTKVFRVHGEDSPHLAEVY 135 +L E W AS +EL DY+INKHHRYL E LP ++ VTKV RVHG PHLA+++ Sbjct: 65 TKLLNESEIDWKNASYQELIDYVINKHHRYLNEALPQLSPYVTKVLRVHGASQPHLAQIH 124 Query: 136 RLFHTLRXXXXXXXXXXXXXXFPKMLAYEKNPTEDXXXXXXXXXXXXXAEHDGAGDILRE 195 +LFH L+ FP +LA+E+NPT++ +EHD AG+I++E Sbjct: 125 KLFHELKIELEQHLIKEETEDFPLILAFEQNPTDENFAKLRIVVGELESEHDHAGNIIKE 184 Query: 196 LRRVTNDYTPPEHACTTYRLTYARLEELEGMTFEHVHLENNILFLR 241 LR+VTND+TPPE AC TYRL Y RLE LE FEH+HLENNILF R Sbjct: 185 LRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPR 230 >C2QBD7.1 C2QBD7_BACCE Putative uncharacterized protein Length = 235 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/226 (50%), Positives = 147/226 (65%), Gaps = 1/226 (0%) Query: 17 FSGEAMVRDIVLQFPKAADYFKAQRIDFCCGGAKPLVEAAAEKGLDTGAVLQDLNKLLAE 76 F+ ++V +IV QFPKA+D FK+ RIDFCCGG KPL++A E+ L VL +LN L Sbjct: 5 FTETSIVGEIVTQFPKASDLFKSYRIDFCCGGNKPLIDAIHERNLSATEVLTELNTLYHN 64 Query: 77 HPVLEEDSA-WNEASSEELADYIINKHHRYLREELPLIAQNVTKVFRVHGEDSPHLAEVY 135 +L E W AS EL DY+INKHHRYL EELP ++ VTKV RVHG PHLA+++ Sbjct: 65 TKLLNESEIDWKNASYRELIDYVINKHHRYLNEELPQLSPYVTKVLRVHGASQPHLAQIH 124 Query: 136 RLFHTLRXXXXXXXXXXXXXXFPKMLAYEKNPTEDXXXXXXXXXXXXXAEHDGAGDILRE 195 +LFH L+ FP +L +E+NPT++ +EH+ AG+I++E Sbjct: 125 KLFHELKMELEQHLIKEETEDFPLILEFEQNPTDENYAKLRKVVDELESEHNHAGNIIKE 184 Query: 196 LRRVTNDYTPPEHACTTYRLTYARLEELEGMTFEHVHLENNILFLR 241 LR+VTND+TPPE AC TYRL Y RLE LE FEH+HLENNILF R Sbjct: 185 LRKVTNDFTPPEGACGTYRLVYQRLEALESDLFEHIHLENNILFPR 230 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,318,641,273 Number of extensions: 48372022 Number of successful extensions: 112715 Number of sequences better than 1.0e-05: 380 Number of HSP's gapped: 112240 Number of HSP's successfully gapped: 531 Length of query: 243 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 111 Effective length of database: 1,817,122,223 Effective search space: 201700566753 Effective search space used: 201700566753 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)