BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0015.p
         (71 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2L061.1 C2L061_9FIRM Transcriptional regulator                       103   3e-21
C3RKK0.1 C3RKK0_9MOLU Transcriptional regulator                       103   4e-21
B0N579.1 B0N579_9FIRM Putative uncharacterized protein                103   4e-21
B6FZ01.1 B6FZ01_9CLOT Putative uncharacterized protein                102   1e-20
Q99Y06.1 Q99Y06_STRP1 Transcriptional regulator, Cro/CI family        100   5e-20

>C2L061.1 C2L061_9FIRM Transcriptional regulator
          Length = 67

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 3  KNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDELF 62
          KNLRLK++RA KD+SQ++LAD VGV+RQTI AIE GDYNPTIRLC+ IC  LGKTLDELF
Sbjct: 2  KNLRLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELF 61

Query: 63 WE 64
          WE
Sbjct: 62 WE 63


>C3RKK0.1 C3RKK0_9MOLU Transcriptional regulator
          Length = 71

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%)

Query: 1  MGKNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDE 60
          M KNLR+KA+RAA DM+QK LADAVGV+RQT+ AIE GDYNPT++LCI+IC  L K+LDE
Sbjct: 1  MAKNLRIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDE 60

Query: 61 LFWE 64
          LFWE
Sbjct: 61 LFWE 64


>B0N579.1 B0N579_9FIRM Putative uncharacterized protein
          Length = 71

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%)

Query: 1  MGKNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDE 60
          M KNLR+KA+RAA DM+QK LADAVGV+RQT+ AIE GDYNPT++LCI+IC  L K+LDE
Sbjct: 1  MSKNLRIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDE 60

Query: 61 LFWE 64
          LFWE
Sbjct: 61 LFWE 64


>B6FZ01.1 B6FZ01_9CLOT Putative uncharacterized protein
          Length = 66

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 56/66 (84%)

Query: 1  MGKNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDE 60
          M KNL++K++RAA DM+QK LA+ VGVTRQTI AIE GDYNPTI LCI+IC  LGKTLDE
Sbjct: 1  MPKNLKIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDE 60

Query: 61 LFWEGD 66
          LFW+ +
Sbjct: 61 LFWDNE 66


>Q99Y06.1 Q99Y06_STRP1 Transcriptional regulator, Cro/CI family
          Length = 68

 Score =  100 bits (249), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 3  KNLRLKASRAAKDMSQKQLADAVGVTRQTIIAIENGDYNPTIRLCIEICLTLGKTLDELF 62
          KNL+LKA+RA KD+SQ+ LAD VGV+RQTI A+E GDYNPTI LCI IC  L KTLD+LF
Sbjct: 2  KNLKLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61

Query: 63 WEGD 66
          WE D
Sbjct: 62 WEAD 65


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 396,612,701
Number of extensions: 11852626
Number of successful extensions: 41482
Number of sequences better than 1.0e-05: 496
Number of HSP's gapped: 41495
Number of HSP's successfully gapped: 496
Length of query: 71
Length of database: 3,060,696,203
Length adjustment: 42
Effective length of query: 29
Effective length of database: 2,665,013,573
Effective search space: 77285393617
Effective search space used: 77285393617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)