BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0012.p
         (49 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJD7.1 B3KJD7_9BACI Helix-turn-helix HxlR type                       92   2e-17
C3BAN7.1 C3BAN7_BACMY Transcriptional regulator, MarR                  75   1e-12
C3AT22.1 C3AT22_BACMY Transcriptional regulator, MarR                  75   1e-12
A7GUW8.1 A7GUW8_BACCN Transcriptional regulator, HxlR family           74   3e-12
C3BSH5.1 C3BSH5_9BACI Transcriptional regulator, MarR                  74   4e-12

>B3KJD7.1 B3KJD7_9BACI Helix-turn-helix HxlR type
          Length = 106

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 45/49 (91%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
           MKDLECEGIL+RHVYPETPVRIEYELT KG+AL PVM+QI SWAE W++
Sbjct: 57  MKDLECEGILIRHVYPETPVRIEYELTEKGKALRPVMEQISSWAEQWID 105


>C3BAN7.1 C3BAN7_BACMY Transcriptional regulator, MarR
          Length = 75

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 42/49 (85%)

Query: 1  MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
          +K+LE EG++VR+VYPE PVRIEY LT KG+ALE VM ++Q+WAE WVE
Sbjct: 27 LKELESEGVVVRNVYPEVPVRIEYGLTDKGKALESVMNEVQNWAEKWVE 75


>C3AT22.1 C3AT22_BACMY Transcriptional regulator, MarR
          Length = 75

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 42/49 (85%)

Query: 1  MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
          +K+LE EG++VR+VYPE PVRIEY LT KG+ALE VM ++Q+WAE WVE
Sbjct: 27 LKELESEGVVVRNVYPEVPVRIEYGLTDKGKALESVMNEVQNWAEKWVE 75


>A7GUW8.1 A7GUW8_BACCN Transcriptional regulator, HxlR family
          Length = 104

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 42/49 (85%)

Query: 1   MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
           +K+LE EGI+VR+VYPE PVRIEY LT KG+ALE VM ++Q+WAE WV+
Sbjct: 56  LKELESEGIVVRNVYPEVPVRIEYGLTDKGKALESVMNEVQNWAEKWVK 104


>C3BSH5.1 C3BSH5_9BACI Transcriptional regulator, MarR
          Length = 75

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 42/49 (85%)

Query: 1  MKDLECEGILVRHVYPETPVRIEYELTAKGRALEPVMQQIQSWAESWVE 49
          +K+LE EG++VR+VYPE PVRIEY LT KG+ALE VM ++Q+WAE WV+
Sbjct: 27 LKELESEGVVVRNVYPEVPVRIEYGLTDKGKALESVMNEVQNWAEKWVK 75


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 314,567,098
Number of extensions: 7680409
Number of successful extensions: 18536
Number of sequences better than 1.0e-05: 207
Number of HSP's gapped: 18570
Number of HSP's successfully gapped: 207
Length of query: 49
Length of database: 3,060,696,203
Length adjustment: 22
Effective length of query: 27
Effective length of database: 2,853,433,873
Effective search space: 77042714571
Effective search space used: 77042714571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)