BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0008.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJC7.1 B3KJC7_9BACI Peptide methionine sulfoxide reductase EC=... 540 e-152 Q67NJ7.1 Q67NJ7_SYMTH Peptide methionine sulfoxide reductase 494 e-138 B1D8X3.1 B1D8X3_9BACL Methionine-R-sulfoxide reductase EC=1.8.4.11 491 e-137 A7GVI0.1 A7GVI0_BACCN Methionine-R-sulfoxide reductase EC=1.8.4.11 485 e-135 C5DAV5.1 C5DAV5_9BACI Methionine-R-sulfoxide reductase 482 e-134 >B3KJC7.1 B3KJC7_9BACI Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 321 Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust. Identities = 248/320 (77%), Positives = 280/320 (87%) Query: 13 DNISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEA 72 +N S +E ATFAGGCFWCMVSPF+ELPGI++VVSGYTGGH NPTYEEVCS+TTGH EA Sbjct: 2 NNRSTPSELATFAGGCFWCMVSPFDELPGILKVVSGYTGGHKENPTYEEVCSDTTGHYEA 61 Query: 73 VQITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAA 132 VQIT+ P+IFPY KLLELFWQQIDPTD GGQF+DRGTSY TAIF H+EEQR+ AE SK A Sbjct: 62 VQITYNPEIFPYEKLLELFWQQIDPTDEGGQFHDRGTSYRTAIFYHTEEQRELAEQSKQA 121 Query: 133 LQASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKE 192 + ASGRF PIVTPI+PA FY AEEYHQ YH KNP HYKRYR+GSGR+ FIE HW Sbjct: 122 VAASGRFDGPIVTPIIPASTFYEAEEYHQDYHKKNPSHYKRYRKGSGREDFIEQHWSEPV 181 Query: 193 DKASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCG 252 D A LK+RLTP+QYEVTQNNATE PF NE+WDHHGEGIYVDIVSGEPLFSS DK+D+GCG Sbjct: 182 DTAELKQRLTPIQYEVTQNNATEPPFHNEYWDHHGEGIYVDIVSGEPLFSSTDKYDAGCG 241 Query: 253 WPSFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALR 312 WPSFTRPIR+Y++KEK DL+H+M+RTEVRSK DSHLGHVF+DGPGPNGLRYCINSAALR Sbjct: 242 WPSFTRPIREYNIKEKMDLTHMMVRTEVRSKKGDSHLGHVFDDGPGPNGLRYCINSAALR 301 Query: 313 FVPKEDLEKEGYGEYRALFQ 332 FVPKE++++EGYGEY LF+ Sbjct: 302 FVPKEEMQREGYGEYLQLFE 321 >Q67NJ7.1 Q67NJ7_SYMTH Peptide methionine sulfoxide reductase Length = 319 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/315 (73%), Positives = 259/315 (82%) Query: 18 KTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQITF 77 + E ATFAGGCFWCMVSPFEE PGI +VVSGYTGGH NPTYEEVCS TTGH EAVQITF Sbjct: 5 RLELATFAGGCFWCMVSPFEEQPGIYKVVSGYTGGHKENPTYEEVCSGTTGHFEAVQITF 64 Query: 78 QPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQASG 137 PD+FPY +LL+LFWQQIDPTD GQFYDRG Y TAIF H+EEQR+ AE SKA L+ASG Sbjct: 65 DPDVFPYERLLDLFWQQIDPTDPDGQFYDRGPQYRTAIFYHNEEQRRLAEKSKAELEASG 124 Query: 138 RFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDKASL 197 RF PI T ILPA PFY AEEYHQGYH KNP HY+RYR SGRD FI HW+ E A L Sbjct: 125 RFDKPIATLILPAGPFYPAEEYHQGYHRKNPFHYQRYRAASGRDDFIRKHWRDPERDAEL 184 Query: 198 KERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWPSFT 257 + RLTP+QYEVTQ ATE PF E+W+H EGIYVD+VSGEPLFSS+DKFD+GCGWPSFT Sbjct: 185 RRRLTPIQYEVTQLGATERPFTGEYWNHFEEGIYVDVVSGEPLFSSRDKFDAGCGWPSFT 244 Query: 258 RPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRFVPKE 317 RP+ ++ E+ DLSH M+RTEVRS+ ADSHLGHVF DGP P GLRYCINSAALRF+PKE Sbjct: 245 RPLVPENIVERLDLSHGMVRTEVRSRGADSHLGHVFPDGPAPTGLRYCINSAALRFIPKE 304 Query: 318 DLEKEGYGEYRALFQ 332 DLEKEGYGE+R LF+ Sbjct: 305 DLEKEGYGEFRKLFE 319 >B1D8X3.1 B1D8X3_9BACL Methionine-R-sulfoxide reductase EC=1.8.4.11 Length = 318 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 225/318 (70%), Positives = 262/318 (82%) Query: 15 ISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQ 74 ++ E+A FAGGCFWCMVSPFEE PGI+ VVSGY+GGH NPTYEEVCSETTGH E V Sbjct: 1 MTTAVEQAMFAGGCFWCMVSPFEETPGILSVVSGYSGGHKANPTYEEVCSETTGHAEVVH 60 Query: 75 ITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQ 134 ITF P I+ Y KLL++FW QIDPTDAGGQF+DRG SY TAIF ++EEQR++AEASK AL Sbjct: 61 ITFDPSIYSYEKLLDVFWHQIDPTDAGGQFHDRGESYRTAIFYYNEEQRRKAEASKEALA 120 Query: 135 ASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDK 194 ASGRF PIVT I PAK FY AE+YHQGYH NP YK YR+GSGRDAFI +HW ++++ Sbjct: 121 ASGRFDKPIVTAIEPAKEFYPAEDYHQGYHRTNPLRYKMYRKGSGRDAFINTHWTVRKEE 180 Query: 195 ASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWP 254 L+ RLTP+QYEVTQNNATE PF EFWDH EG+YVDIVSGEPLF+S++K+DSGCGWP Sbjct: 181 GELRTRLTPIQYEVTQNNATERPFTGEFWDHKDEGLYVDIVSGEPLFTSREKYDSGCGWP 240 Query: 255 SFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRFV 314 SFT+P+++ S+ E D SH M+RTEVRSK DSHLGHVF+DGPGPNGLRYCINSA+LRF+ Sbjct: 241 SFTKPVKEASITEVLDTSHFMVRTEVRSKEGDSHLGHVFDDGPGPNGLRYCINSASLRFI 300 Query: 315 PKEDLEKEGYGEYRALFQ 332 P DLEKEGYGEY F+ Sbjct: 301 PAADLEKEGYGEYVNYFK 318 >A7GVI0.1 A7GVI0_BACCN Methionine-R-sulfoxide reductase EC=1.8.4.11 Length = 321 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/318 (72%), Positives = 259/318 (81%), Gaps = 2/318 (0%) Query: 14 NISGKTEKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAV 73 +I+ K E ATFAGGCFWCMVSPFEE+ G++ ++SGYTGGH NPTY+EVCSETTGH EAV Sbjct: 2 SINEKVELATFAGGCFWCMVSPFEEMEGVIRIISGYTGGHKENPTYKEVCSETTGHYEAV 61 Query: 74 QITFQPDIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAAL 133 QITF PD PY KLL ++W+QIDPTDAGGQF+DRG SY TAIF H+EEQR+ AE SK L Sbjct: 62 QITFDPDKMPYEKLLNMYWRQIDPTDAGGQFHDRGQSYETAIFYHNEEQRKLAEVSKKEL 121 Query: 134 QASGRFSAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKED 193 SGRFS PIVT I+PA FY AEEYHQ YH KN Y YRQGSGRDAFI+ HW +D Sbjct: 122 AESGRFSKPIVTKIIPASTFYPAEEYHQDYHKKNAFRYALYRQGSGRDAFIKKHW--PKD 179 Query: 194 KASLKERLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGW 253 A LKE+LT +Q+ VTQ N TE PF+NE+WDH EG+YVDIVSGEPLF+S DKFDSGCGW Sbjct: 180 NAHLKEQLTEMQFYVTQENGTEPPFQNEYWDHKEEGLYVDIVSGEPLFTSLDKFDSGCGW 239 Query: 254 PSFTRPIRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRF 313 PSFT+P+ SVKEK DLSH M RTEVRS+ DSHLGHVF DGPGPNGLRYCINSAALRF Sbjct: 240 PSFTKPVMAASVKEKIDLSHNMTRTEVRSREGDSHLGHVFPDGPGPNGLRYCINSAALRF 299 Query: 314 VPKEDLEKEGYGEYRALF 331 +PKEDLEKEGYG++ LF Sbjct: 300 IPKEDLEKEGYGDFLILF 317 >C5DAV5.1 C5DAV5_9BACI Methionine-R-sulfoxide reductase Length = 323 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 223/313 (71%), Positives = 260/313 (83%) Query: 20 EKATFAGGCFWCMVSPFEELPGIVEVVSGYTGGHTVNPTYEEVCSETTGHVEAVQITFQP 79 E ATFAGGCFWCMVSPFEE PGI+ ++SGYTGGH NPTYEEVCS+TTGH EAVQITF P Sbjct: 4 ELATFAGGCFWCMVSPFEEQPGIISIISGYTGGHKENPTYEEVCSQTTGHYEAVQITFDP 63 Query: 80 DIFPYTKLLELFWQQIDPTDAGGQFYDRGTSYGTAIFTHSEEQRQQAEASKAALQASGRF 139 D+FPY KLL+++W+QIDPTD GGQF+DRG SY TAIF H+E+QR AE SK L+ SGRF Sbjct: 64 DVFPYEKLLDIYWRQIDPTDDGGQFHDRGESYRTAIFYHNEKQRLLAEKSKRELEESGRF 123 Query: 140 SAPIVTPILPAKPFYRAEEYHQGYHHKNPGHYKRYRQGSGRDAFIESHWKHKEDKASLKE 199 S PIVT ILPA FY AEEYHQ YH K P HYK Y SGRDAF++ HW+ KE + L++ Sbjct: 124 SKPIVTKILPASTFYPAEEYHQNYHKKRPLHYKMYYIASGRDAFLKEHWRDKEREEMLRK 183 Query: 200 RLTPLQYEVTQNNATESPFRNEFWDHHGEGIYVDIVSGEPLFSSQDKFDSGCGWPSFTRP 259 +LTPLQ+EVTQ N TE PF N +W++ EGIYVDIVSGEPLFS++D+FD+GCGWPSFT+P Sbjct: 184 KLTPLQFEVTQRNGTEPPFDNPYWNNKREGIYVDIVSGEPLFSTKDQFDAGCGWPSFTKP 243 Query: 260 IRDYSVKEKTDLSHLMIRTEVRSKTADSHLGHVFNDGPGPNGLRYCINSAALRFVPKEDL 319 + ++K + DLSH MIRTEVRS+ ADSHLGHVFNDGP P GLRYCINSAALRF+PKEDL Sbjct: 244 LHPENIKTELDLSHGMIRTEVRSRKADSHLGHVFNDGPEPTGLRYCINSAALRFIPKEDL 303 Query: 320 EKEGYGEYRALFQ 332 EKEGYGEY +LF+ Sbjct: 304 EKEGYGEYLSLFE 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,237,240,069 Number of extensions: 99420677 Number of successful extensions: 211736 Number of sequences better than 1.0e-05: 3678 Number of HSP's gapped: 207913 Number of HSP's successfully gapped: 3788 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)