BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0350.0006.p (369 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBX1.1 B1DBX1_9BACL Putative uncharacterized protein 196 3e-48 Q2B5C2.1 Q2B5C2_9BACI Putative uncharacterized protein 131 9e-29 A8VWA8.1 A8VWA8_9BACI Putative uncharacterized protein 120 2e-25 C1SA01.1 C1SA01_9SPHI Putative uncharacterized protein 118 9e-25 B9LGQ2.1 B9LGQ2_CHLSY Putative uncharacterized protein 106 4e-21 >B1DBX1.1 B1DBX1_9BACL Putative uncharacterized protein Length = 344 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/245 (42%), Positives = 150/245 (61%), Gaps = 4/245 (1%) Query: 110 AGLNKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERGGTFILKVPA 169 AGLN+KLIY ANLT+E D+ A T +RN + + GYI++F + E+ T+ +KVPA Sbjct: 91 AGLNQKLIYKANLTIEAVDFDKAATVLRNTIHQSGGYILQFQDGQYNGEKSSTYTIKVPA 150 Query: 170 SGFSSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKATKSAD 229 +GF F+ L I+++K +RQI G DV+EEYVDL+SRLKA+Q +E + + FM KATK+ D Sbjct: 151 AGFMDFIDRLNGIEHKKFERQISGTDVTEEYVDLQSRLKAQQAVEERLLAFMDKATKADD 210 Query: 230 LVAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRLYQTDESLNITKAKEQGPLMNRA 289 LV F+ QL +QE IE +KGR+RY+D NVS+STVELRLYQ D +++ E G L ++ Sbjct: 211 LVKFSEQLATVQENIERLKGRIRYLDNNVSYSTVELRLYQPDAK---SESVEDG-LGDKM 266 Query: 290 SEALQGSLHALSVMFQWXXXXXXXXXXXXXXXXXXXXXXXWFRRKAKPRDRGRADRMQMA 349 S+ALQ S++A+ + Q W R K + R + +A + Sbjct: 267 SKALQDSVNAMITVLQGLLVFVAGALPILLLLVIIGLPVYWLRGKFRSRPKYQAPPRNLI 326 Query: 350 NRELK 354 +K Sbjct: 327 TPPVK 331 >Q2B5C2.1 Q2B5C2_9BACI Putative uncharacterized protein Length = 288 Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 91/262 (34%), Positives = 138/262 (52%), Gaps = 22/262 (8%) Query: 46 TEASVDGGAAQNASADVAEQSMASKAEAPAAEGTKAGGGNSAVGSTDAAQTSKGTAGFTG 105 +E + D +S + AE S A AE A E + GGN A G Sbjct: 13 SEQASDSAGKSESSYEKAE-SAAESAEQDA-ESEISSGGNEA----------------KG 54 Query: 106 SDVVAGLNKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYER--GGTF 163 +D ++ +IY+A L + VKD+ AQT + + G+I+E S S ER GT Sbjct: 55 ADQSTAADRMVIYNAELDLRVKDFMKAQTALESKAAQYGGFIVE-SSSYRDDERQLSGTL 113 Query: 164 ILKVPASGFSSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKK 223 ++++P F+ FL+ E ++ R + GQDV+EEYVDLESRL++K+++E + I FM+K Sbjct: 114 VIRIPQKNFNQFLNDAEGTASKVDNRHVSGQDVTEEYVDLESRLRSKRVVEERLISFMEK 173 Query: 224 ATKSADLVAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRLYQTD-ESLNITKAKEQ 282 A K+ DL+ + L IQEEIE + GR+ Y+ FSTV + LY+ S++ T K Sbjct: 174 AEKTEDLLKISQDLAGIQEEIEQLAGRINYLKNQTDFSTVTVSLYEDQTPSIDKTDLKTW 233 Query: 283 GPLMNRASEALQGSLHALSVMF 304 + +E+L L A S +F Sbjct: 234 ERTKEQFTESLSFLLSAFSGLF 255 >A8VWA8.1 A8VWA8_9BACI Putative uncharacterized protein Length = 310 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 114/190 (60%), Gaps = 4/190 (2%) Query: 113 NKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERG--GTFILKVPAS 170 ++ +IY +L +E +Y + + A GY+IE S SG +R G +++VP + Sbjct: 71 DRLIIYEGDLYLETTNYQETVSAIERQTEEAGGYLIESSTRQSGDDRLPLGHMVVRVPVN 130 Query: 171 GFSSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKATKSADL 230 F SF+ + E ++ Q +G+DV+EEYVDLESRL+ +Q +E + + FM++A + L Sbjct: 131 DFFSFIDRIGDTGAEVIEEQTRGRDVTEEYVDLESRLRTQQTVEERLLTFMEEADSTEAL 190 Query: 231 VAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRLYQTDESLNITKAKEQGPLMNRAS 290 + +NQL IQ+EIE+I+GR+ Y+D V + T+ + + + +E+ + +E +RA+ Sbjct: 191 LDVSNQLTDIQQEIESIQGRINYLDNRVDYGTLHIEISEREEAQ--LQDRETLNTWDRAT 248 Query: 291 EALQGSLHAL 300 + L G+L+ L Sbjct: 249 DQLMGTLNGL 258 >C1SA01.1 C1SA01_9SPHI Putative uncharacterized protein Length = 291 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 121/239 (50%), Gaps = 18/239 (7%) Query: 58 ASADVAEQ---SMASKAEAPAAEGTKAGGGNSAV----GSTDAAQTSKGTAGFTGSDVV- 109 A A AEQ ++A K EA + T V G D A S G FT + Sbjct: 2 ACARKAEQKTLALAFKEEAKPSATTYRSDEEDVVAYNEGPEDKAAAS-GLVAFTPPVIAK 60 Query: 110 ----AGLNKKLIYHANLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERGGTFIL 165 A + KK+I + + V+DY A + +V NGYI E +ES S + Sbjct: 61 DVSSAAIQKKIIKNGEVRYSVRDYHEAGKAMNAIVARYNGYITEENESRSDLSWEIKVSI 120 Query: 166 KVPASGFSSFLSSLEKIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKAT 225 KVPA F S L +L N +++ + DV+EEY+D+ SR+KAK+ +E +Y+E +K+A Sbjct: 121 KVPAQKFDSCLEALAGTANTLIEKNVSATDVTEEYIDVASRMKAKKEVELRYLEILKQAK 180 Query: 226 KSADLVAFANQLGAIQEEIETIKGRMRYIDQNVSFSTVELRLYQTDESLNITKAKEQGP 284 ++ QL +I+EEIE +GR++YID NV+ ST+ L YQT + QGP Sbjct: 181 TVEGILKVEEQLKSIREEIEASQGRLQYIDHNVAMSTISLSFYQT-----FATSSPQGP 234 >B9LGQ2.1 B9LGQ2_CHLSY Putative uncharacterized protein Length = 303 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 23/225 (10%) Query: 66 SMASKAEAPAAEGTK--AGG---GNSAVGSTDAAQTSKGTAGFTGSDVVAGLNKKLIYHA 120 M S A PA T AGG G SA+GS A Q + +I +A Sbjct: 48 PMLSGAPVPAQRDTASFAGGVSSGESAIGSEVAVQ------------------RLIIKNA 89 Query: 121 NLTMEVKDYAAAQTEVRNMVTLANGYIIEFSESTSGYERGGTFILKVPASGFSSFLSSLE 180 ++ +EV D AA+ +R G++ SG + T +L+VP F + L E Sbjct: 90 SIALEVADVLAAEQALRQKAEALGGFVASVETYGSGEDLRATIVLRVPVEHFEAVLRDAE 149 Query: 181 KIKNEKLQRQIQGQDVSEEYVDLESRLKAKQLMESQYIEFMKKATKSADLVAFANQLGAI 240 + + L+R + G DV+EEYVDLE+RL+ + ++ ++ + +A D + L I Sbjct: 150 GLASNVLRRSVSGSDVTEEYVDLEARLRNLEATNARLLDLLSRAQNVNDALMVNQALTEI 209 Query: 241 QEEIETIKGRMRYIDQNVSFSTVELRLYQTDESLNITKAKEQGPL 285 QE+IE IKGRM+Y++Q+ + ST+ + L I + PL Sbjct: 210 QEQIERIKGRMQYLEQSAAMSTITVELLPVPPPTPIIEEDAWQPL 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.125 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,449,017,524 Number of extensions: 51594484 Number of successful extensions: 233825 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 233893 Number of HSP's successfully gapped: 97 Length of query: 369 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 232 Effective length of database: 1,770,017,148 Effective search space: 410643978336 Effective search space used: 410643978336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)