BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0350.0004.p
         (42 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7GPW3.1 A7GPW3_BACCN Putative uncharacterized protein                 56   9e-07
B1DKT5.1 B1DKT5_9BACL Putative uncharacterized protein                 56   1e-06
Q81Q09.1 Q81Q09_BACAN Putative uncharacterized protein                 55   3e-06
Q737J1.1 Q737J1_BACC1 Putative uncharacterized protein                 55   3e-06
C3PBZ4.1 C3PBZ4_BACAA Putative uncharacterized protein                 55   3e-06

>A7GPW3.1 A7GPW3_BACCN Putative uncharacterized protein
          Length = 51

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 28/39 (71%)

Query: 1  VNSCTYWAEENKCNAESIFVAYHSSKQPSNAEETDCKTF 39
          VN+C YW   NKCNA++I+V  H  KQ S  EETDCKTF
Sbjct: 9  VNNCKYWGNGNKCNADAIYVVSHKGKQASKTEETDCKTF 47


>B1DKT5.1 B1DKT5_9BACL Putative uncharacterized protein
          Length = 51

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 31/42 (73%)

Query: 1  VNSCTYWAEENKCNAESIFVAYHSSKQPSNAEETDCKTFERK 42
          VNSC YWA  N C A SI+V  + SKQ SN++ETDCKTFE K
Sbjct: 9  VNSCKYWAAGNNCAATSIYVVNNRSKQASNSDETDCKTFEPK 50


>Q81Q09.1 Q81Q09_BACAN Putative uncharacterized protein
          Length = 51

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 1  VNSCTYWAEENKCNAESIFVAYHSSKQPSNAEETDCKTFE 40
          VN+C +WA  NKC+A++I+V  H  KQ S  EETDCKTF+
Sbjct: 9  VNNCKFWANGNKCSADAIYVVSHKGKQASTTEETDCKTFD 48


>Q737J1.1 Q737J1_BACC1 Putative uncharacterized protein
          Length = 51

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 1  VNSCTYWAEENKCNAESIFVAYHSSKQPSNAEETDCKTFE 40
          VN+C +WA  NKC+A++I+V  H  KQ S  EETDCKTF+
Sbjct: 9  VNNCKFWANGNKCSADAIYVVSHKGKQASTTEETDCKTFD 48


>C3PBZ4.1 C3PBZ4_BACAA Putative uncharacterized protein
          Length = 51

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 1  VNSCTYWAEENKCNAESIFVAYHSSKQPSNAEETDCKTFE 40
          VN+C +WA  NKC+A++I+V  H  KQ S  EETDCKTF+
Sbjct: 9  VNNCKFWANGNKCSADAIYVVSHKGKQASTTEETDCKTFD 48


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.119    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 213,994,501
Number of extensions: 3964650
Number of successful extensions: 6500
Number of sequences better than 1.0e-05: 87
Number of HSP's gapped: 6503
Number of HSP's successfully gapped: 87
Length of query: 42
Length of database: 3,060,696,203
Length adjustment: 16
Effective length of query: 26
Effective length of database: 2,909,959,963
Effective search space: 75658959038
Effective search space used: 75658959038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)