BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0020.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KC64.1 B3KC64_9BACI Helix-turn-helix HxlR type                      193   5e-48
B1DCB2.1 B1DCB2_9BACL Transcriptional regulator, HxlR family          181   2e-44
Q65GV4.1 Q65GV4_BACLD YtcD                                            162   7e-39
Q2BCE7.1 Q2BCE7_9BACI Putative uncharacterized protein                161   2e-38
A4ILF2.1 A4ILF2_GEOTN Transcriptional regulator MarR family           161   2e-38

>B3KC64.1 B3KC64_9BACI Helix-turn-helix HxlR type
          Length = 124

 Score =  193 bits (490), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 100/113 (88%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YNTAVEATLEVIGGKWKPVILF LTFGK+RN EF+SL+P ITQK+LTQ LRELEE+GV
Sbjct: 6   KVYNTAVEATLEVIGGKWKPVILFHLTFGKRRNSEFLSLIPQITQKMLTQHLRELEEEGV 65

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQP 122
           I R  YN+VPP+VEYEL++YGWSLKEILHLMCRWGD HIER YG+ A VL +P
Sbjct: 66  IVRKTYNQVPPKVEYELSEYGWSLKEILHLMCRWGDTHIERKYGESAMVLEKP 118


>B1DCB2.1 B1DCB2_9BACL Transcriptional regulator, HxlR family
          Length = 127

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 95/113 (84%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K +NTAVEATLE IGGKWKPVILF LTFGKKRNGEF+ L+P I+QKVLTQQL EL  DG+
Sbjct: 6   KIFNTAVEATLEAIGGKWKPVILFHLTFGKKRNGEFLRLIPDISQKVLTQQLNELMRDGI 65

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQP 122
           I R  YN++PP+VEYELTDYGWSLK+ILH MCRWGD +I++ YG +  VL QP
Sbjct: 66  INRISYNQIPPKVEYELTDYGWSLKDILHAMCRWGDGYIDKKYGGKGKVLFQP 118


>Q65GV4.1 Q65GV4_BACLD YtcD
          Length = 125

 Score =  162 bits (411), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (80%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YN +VEATLEVIGGKWK VIL  LT GKKR  E   LMP ITQK+LTQQLRELEEDGV
Sbjct: 4   KKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEEDGV 63

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVL 119
           I R VY +VPP+VEYEL++YGW+LK+IL  +C WG+ HI +VYGD+ AVL
Sbjct: 64  INRIVYQQVPPKVEYELSEYGWTLKDILDSLCSWGEKHITKVYGDKFAVL 113


>Q2BCE7.1 Q2BCE7_9BACI Putative uncharacterized protein
          Length = 124

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 89/113 (78%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YN +VEATLEVIGGKWK VIL  LT GKKR  E   LMP ITQK+LTQQLRELEEDGV
Sbjct: 5   KKYNISVEATLEVIGGKWKTVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEEDGV 64

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQP 122
           I R VYN+VPP+VEYEL+DYG SL+ IL  +C WG+ HI +VYGD+ +VL + 
Sbjct: 65  INRIVYNQVPPKVEYELSDYGKSLESILDALCAWGERHITKVYGDKFSVLEES 117


>A4ILF2.1 A4ILF2_GEOTN Transcriptional regulator MarR family
          Length = 123

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 88/112 (78%)

Query: 10  KTYNTAVEATLEVIGGKWKPVILFFLTFGKKRNGEFISLMPVITQKVLTQQLRELEEDGV 69
           K YN  VEATLEVIGGKWK VIL  LT GKKR  E   LMP ITQK+LTQQLRELE DG+
Sbjct: 4   KKYNIPVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEADGI 63

Query: 70  IKRTVYNEVPPRVEYELTDYGWSLKEILHLMCRWGDAHIERVYGDQAAVLAQ 121
           I R VYN+VPP+VEYEL++YGWSLKEIL  +C WG+ HI +VYGD+  VL +
Sbjct: 64  INRIVYNQVPPKVEYELSEYGWSLKEILDSLCAWGEKHITKVYGDKFTVLEE 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 775,537,619
Number of extensions: 28965139
Number of successful extensions: 76922
Number of sequences better than 1.0e-05: 2477
Number of HSP's gapped: 76562
Number of HSP's successfully gapped: 2478
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)