BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0349.0019.p (259 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9V7.1 B1D9V7_9BACL Putative uncharacterized protein 99 4e-19 A7GMR4.1 A7GMR4_BACCN Putative uncharacterized protein 80 2e-13 C3FHI2.1 C3FHI2_BACTB Putative uncharacterized protein 77 1e-12 C3CYZ9.1 C3CYZ9_BACTU Putative uncharacterized protein 77 1e-12 C3CG44.1 C3CG44_BACTU Putative uncharacterized protein 77 1e-12 >B1D9V7.1 B1D9V7_9BACL Putative uncharacterized protein Length = 259 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 6/193 (3%) Query: 51 WRQQVQYAVGHTLNDFYSLQPEVRRET-PIQFLLERRWPPKGDAFPSLMHYWEVKTAVTD 109 W Q Q AV H +N F+ + PE R I LER W K F S HYW ++ + D Sbjct: 41 WMQLAQVAVSHVVNAFF-MTPEGERANFSIPDRLERWWTNKVAKFESPEHYWSIRQQLID 99 Query: 110 ELMRRASVNHLQDIPVLLYEQWHVPVPELGIELAMIFQ--LAWNSAVPGRCLSIQKLMVS 167 L ++ P++L+EQ V VPEL +EL IFQ L + P + ++K ++ Sbjct: 100 GL-HSLLISEKSYTPIILFEQHQVFVPELQVELMQIFQAVLKSENGDPSDYI-VRKYIID 157 Query: 168 GNDEVITGFLHMANVFCHQAYGMPADKVEVYSLLDGRQHIFDGAGIPLPESLDYVRLLSV 227 ++E I F H+ VFC A+G ++EV +L G + I L +SLDY++L + Sbjct: 158 EDEESIALFQHLTAVFCSSAFGRLPLRIEVLPVLSGNRRIVHPDKESLEQSLDYMKLAAS 217 Query: 228 FMKQEESAARMLK 240 FM + SAA + K Sbjct: 218 FMPEASSAAGLRK 230 >A7GMR4.1 A7GMR4_BACCN Putative uncharacterized protein Length = 252 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 97/177 (54%), Gaps = 6/177 (3%) Query: 51 WRQQVQYAVGHTLNDFYSLQPEVRRETPIQFLLERRW-PPKGDAFPSLMHYWEVKTAVTD 109 W+Q VQ V ++++Y E + E + LLE+ W K F S + Y+ V +TD Sbjct: 40 WQQIVQMIVNQIVHEYYLTSKEKQTEILLLELLEKHWHKVKTSMFSSKIEYYIVLAKLTD 99 Query: 110 ELMRRASVNHLQDIPVLLYEQWHVPVPELGIELAMIFQLA-WNSAVPGRCLSIQKLMVSG 168 L++ + + P+ LYE+ + + ELGI +++ F++ W+S + I+K +V G Sbjct: 100 HLLQFVKKDESKTPPLFLYEKIQMYMEELGIHISLTFEIGEWSS----QSFVIKKYVVDG 155 Query: 169 NDEVITGFLHMANVFCHQAYGMPADKVEVYSLLDGRQHIFDGAGIPLPESLDYVRLL 225 N+E+ + VFC++A+G+ + +E +L++G ++ + + E ++Y++++ Sbjct: 156 NEEMFALCQKLTTVFCYKAFGILPETIEFVNLIEGTRYEYVPKDKDIIEGIEYLKIM 212 >C3FHI2.1 C3FHI2_BACTB Putative uncharacterized protein Length = 248 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 51 WRQQVQYAVGHTLNDFYSLQPEVRRETPIQFLLERRWPP-KGDAFPSLMHYWEVKTAVTD 109 W+Q VQ V +N++Y+L + + + L+E+ W + + F S Y+ V +TD Sbjct: 31 WQQIVQMIVNQIINEYYTLPAGQQTKIVLLILIEKYWKKVRINMFASKTEYYIVLAKLTD 90 Query: 110 ELMRRASVNHLQDIPVLLYEQWHVPVPELGIELAMIFQLA-WNSAVPGRCLSIQKLMVSG 168 L++ + Q P+ LYE++ + ELG+ +++ F++ WN+ I+K +V Sbjct: 91 HLLQFVERDDSQTPPLFLYEKFQTYMEELGVHMSLTFEVGEWNA----ESFVIKKYVVDA 146 Query: 169 NDEVITGFLHMANVFCHQAYGMPADKVEVYSLLDGRQHIFDGAGIPLPESLDYVRLLSVF 228 ++E++ + VF ++A+G+ K+EV +L++G ++ + +P+ D + ++ Sbjct: 147 DEEMLALCQKLMTVFSYKAFGVLPGKIEVINLIEGTKYEY------IPKQEDIITGMAEL 200 Query: 229 MKQEESAARMLKYGER--RSE 247 + +E + Y ER RSE Sbjct: 201 SRMKEMLQQPEHYTERHFRSE 221 >C3CYZ9.1 C3CYZ9_BACTU Putative uncharacterized protein Length = 248 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 51 WRQQVQYAVGHTLNDFYSLQPEVRRETPIQFLLERRWPP-KGDAFPSLMHYWEVKTAVTD 109 W+Q VQ V +N++Y+L + + + L+E+ W + + F S Y+ V +TD Sbjct: 31 WQQIVQMIVNQIINEYYTLPAGQQTKIVLLILIEKYWKKVRINMFASKTEYYIVLAKLTD 90 Query: 110 ELMRRASVNHLQDIPVLLYEQWHVPVPELGIELAMIFQLA-WNSAVPGRCLSIQKLMVSG 168 L++ + Q P+ LYE++ + ELG+ +++ F++ WN+ I+K +V Sbjct: 91 HLLQFVERDDSQTPPLFLYEKFQTYMEELGVHMSLTFEVGEWNA----ESFVIKKYVVDA 146 Query: 169 NDEVITGFLHMANVFCHQAYGMPADKVEVYSLLDGRQHIFDGAGIPLPESLDYVRLLSVF 228 ++E++ + VF ++A+G+ K+EV +L++G ++ + +P+ D + ++ Sbjct: 147 DEEMLALCQKLMTVFSYKAFGVLPGKIEVINLIEGTKYEY------IPKQEDIITGMAEL 200 Query: 229 MKQEESAARMLKYGER--RSE 247 + +E + Y ER RSE Sbjct: 201 SRMKEMLQQPEHYTERHFRSE 221 >C3CG44.1 C3CG44_BACTU Putative uncharacterized protein Length = 248 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 51 WRQQVQYAVGHTLNDFYSLQPEVRRETPIQFLLERRWPP-KGDAFPSLMHYWEVKTAVTD 109 W+Q VQ V +N++Y+L + + + L+E+ W + + F S Y+ V +TD Sbjct: 31 WQQIVQMIVNQIINEYYTLPAGQQTKIVLLILIEKYWKKVRINMFASKTEYYIVLAKLTD 90 Query: 110 ELMRRASVNHLQDIPVLLYEQWHVPVPELGIELAMIFQLA-WNSAVPGRCLSIQKLMVSG 168 L++ + Q P+ LYE++ + ELG+ +++ F++ WN+ I+K +V Sbjct: 91 HLLQFVERDDSQTPPLFLYEKFQTYMEELGVHMSLTFEVGEWNA----ESFVIKKYVVDA 146 Query: 169 NDEVITGFLHMANVFCHQAYGMPADKVEVYSLLDGRQHIFDGAGIPLPESLDYVRLLSVF 228 ++E++ + VF ++A+G+ K+EV +L++G ++ + +P+ D + ++ Sbjct: 147 DEEMLALCQKLMTVFSYKAFGVLPGKIEVINLIEGTKYEY------IPKQEDIITGMAEL 200 Query: 229 MKQEESAARMLKYGER--RSE 247 + +E + Y ER RSE Sbjct: 201 SRMKEMLQQPEHYTERHFRSE 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,406,858,935 Number of extensions: 56280433 Number of successful extensions: 157103 Number of sequences better than 1.0e-05: 77 Number of HSP's gapped: 156954 Number of HSP's successfully gapped: 77 Length of query: 259 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 126 Effective length of database: 1,807,701,208 Effective search space: 227770352208 Effective search space used: 227770352208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)