BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0018.p
         (150 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B7GI59.1 B7GI59_ANOFW Flavodoxin                                      176   6e-43
C0ZGI0.1 C0ZGI0_BREBN Probable flavodoxin                             166   7e-40
A8FCN0.1 A8FCN0_BACP2 Flavodoxin                                      156   6e-37
B4AEK3.1 B4AEK3_BACPU Flavodoxin                                      154   3e-36
C2UYA2.1 C2UYA2_BACCE Flavodoxin-1                                    152   1e-35

>B7GI59.1 B7GI59_ANOFW Flavodoxin
          Length = 146

 Score =  176 bits (446), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 109/144 (75%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWG 60
           MAKV++ + S+TGNTEE+AE I EG+R+ G E  +K V D  A E++ Y+G+LLGAYTWG
Sbjct: 1   MAKVIMVFTSMTGNTEEMAEAIAEGVREQGAELDVKEVLDATATELEEYDGILLGAYTWG 60

Query: 61  DGELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQES 120
           DGELPD+FLDFY+E+D +DLT  KAA FGS D+ YE Y  AV+ + EKL+ERGAE+V + 
Sbjct: 61  DGELPDDFLDFYDELDSVDLTGKKAAVFGSCDSSYEKYGAAVDILIEKLQERGAEVVLDG 120

Query: 121 LKIEYGPNAAEKEACRSFGRQFIE 144
           LK+E  P   EK+ CR FGR F++
Sbjct: 121 LKVELTPTNEEKQLCRLFGRDFVK 144


>C0ZGI0.1 C0ZGI0_BREBN Probable flavodoxin
          Length = 146

 Score =  166 bits (420), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 101/141 (71%)

Query: 4   VLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWGDGE 63
           +L+ YAS+TGNT+EIAE I EGIR  G E  +K V D NA E++AY+G+LLGAYTWGDGE
Sbjct: 3   ILMVYASMTGNTQEIAEAIAEGIRSTGAELEIKEVMDANAKELEAYDGILLGAYTWGDGE 62

Query: 64  LPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQESLKI 123
           LPDE LDFYEEMD++DL+  K  AFGS D+ YE    AV+ + +K  ERGAE   E LKI
Sbjct: 63  LPDECLDFYEEMDDIDLSGKKVVAFGSCDSAYEHVGAAVDILLKKASERGAETPLEGLKI 122

Query: 124 EYGPNAAEKEACRSFGRQFIE 144
           E  P A E E C++FG  F E
Sbjct: 123 ELSPTAKEVETCKAFGVSFAE 143


>A8FCN0.1 A8FCN0_BACP2 Flavodoxin
          Length = 152

 Score =  156 bits (394), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 102/142 (71%)

Query: 3   KVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWGDG 62
           KVL+ YA+++GNTE +A+LI +GI +AG         D +A+ +  Y  ++LGAYTWGDG
Sbjct: 4   KVLLVYATMSGNTEAMADLIEKGITEAGAGVDRHEAMDIDAELLNDYTHIMLGAYTWGDG 63

Query: 63  ELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQESLK 122
           +LPD+F+DFYEEM+ELDLT    A FGSGDT YE +CGAV+ IEEK++E G +IV  S+K
Sbjct: 64  DLPDDFIDFYEEMEELDLTGKAFAVFGSGDTSYEHFCGAVDLIEEKVKELGGDIVLPSVK 123

Query: 123 IEYGPNAAEKEACRSFGRQFIE 144
           IE  P   E+E   SFG+QF+ 
Sbjct: 124 IELNPEGEEEEKLISFGKQFVH 145


>B4AEK3.1 B4AEK3_BACPU Flavodoxin
          Length = 152

 Score =  154 bits (388), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 101/142 (71%)

Query: 3   KVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWGDG 62
           KVL+ YA+++GNTE +A+LI +GI +AG         D +A+ +  Y  ++LGAYTWGDG
Sbjct: 4   KVLLVYATMSGNTEAMADLIEKGITEAGAGVDRHEAMDIDAELLNDYTHIMLGAYTWGDG 63

Query: 63  ELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQESLK 122
           +LPD+F+D YEEM+ELDLT    A FGSGDT YE +CGAV+ IEEK++E G +IV  S+K
Sbjct: 64  DLPDDFIDLYEEMEELDLTGKAFAVFGSGDTSYEHFCGAVDLIEEKVKELGGDIVLPSVK 123

Query: 123 IEYGPNAAEKEACRSFGRQFIE 144
           IE  P   E+E   SFG+QF+ 
Sbjct: 124 IELNPEGEEEEKLISFGKQFVH 145


>C2UYA2.1 C2UYA2_BACCE Flavodoxin-1
          Length = 147

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 1   MAKVLVAYASLTGNTEEIAELIVEGIRQAGGEAVLKSVTDCNADEIKAYEGVLLGAYTWG 60
           MAK+L+AYAS++GNTE IA+LI   +     E VL+ +   +A+E+ AY+G++LG+YTWG
Sbjct: 1   MAKILIAYASMSGNTESIADLIKVSLDAFDHEVVLQEMEGMDAEELLAYDGIILGSYTWG 60

Query: 61  DGELPDEFLDFYEEMDELDLTACKAAAFGSGDTGYEIYCGAVNQIEEKLRERGAEIVQES 120
           DGELP E  DF+E+++ +DL+  KAA FGSGDT YE++C AV   EE+L ERGAE+VQE 
Sbjct: 61  DGELPFEAEDFHEDLENIDLSGKKAAVFGSGDTAYELFCEAVTIFEERLVERGAELVQEG 120

Query: 121 LKIEYGPNAAEK-EACRSFGRQFIE 144
           LKIE  P   E  E C +F   F E
Sbjct: 121 LKIELSPEDEEDIEKCSNFAIAFAE 145


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 888,868,132
Number of extensions: 36184480
Number of successful extensions: 92384
Number of sequences better than 1.0e-05: 1306
Number of HSP's gapped: 92489
Number of HSP's successfully gapped: 1306
Length of query: 150
Length of database: 3,060,696,203
Length adjustment: 112
Effective length of query: 38
Effective length of database: 2,005,542,523
Effective search space: 76210615874
Effective search space used: 76210615874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)