BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0017.p
         (90 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A0AM06.1 A0AM06_LISW6 Complete genome                                  90   6e-17
Q71WA0.1 Q71WA0_LISMF Putative uncharacterized protein                 87   3e-16
C1KZM5.1 C1KZM5_LISMC Putative uncharacterized protein                 87   3e-16
Q4EJP9.1 Q4EJP9_LISMO Putative uncharacterized protein                 87   3e-16
Q8Y407.1 Q8Y407_LISMO Lmo2671 protein                                  87   3e-16

>A0AM06.1 A0AM06_LISW6 Complete genome
          Length = 122

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 8   GAKIGFDKGQPGLIIWNENKWGKHTTGVVNLVFSC-SSLDETYEQLKARGLDCQPPATME 66
           GAK+GF +  PG+I+WN  KWGK +   V  VFSC ++LDE Y++L+A G++ Q P   E
Sbjct: 40  GAKLGFSENAPGIIVWNSGKWGKSSESKVEFVFSCDTNLDEMYKELQAAGVETQEPRVAE 99

Query: 67  YGGKEMNFRDPDGNGITLLE 86
           +GG+E+   DPDGN I +LE
Sbjct: 100 WGGRELKLFDPDGNKIMILE 119


>Q71WA0.1 Q71WA0_LISMF Putative uncharacterized protein
          Length = 122

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 8   GAKIGFDKGQPGLIIWNENKWGKHTTGVVNLVFSC-SSLDETYEQLKARGLDCQPPATME 66
           GAK+GF +  PG+I+WN +KWG+ +   V  VFSC ++LDE Y +L+  G++   P   E
Sbjct: 40  GAKLGFSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPRVAE 99

Query: 67  YGGKEMNFRDPDGNGITLLEGA 88
           +GG+E+N  DPDGN I +LE A
Sbjct: 100 WGGRELNLLDPDGNKIMILEPA 121


>C1KZM5.1 C1KZM5_LISMC Putative uncharacterized protein
          Length = 122

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 8   GAKIGFDKGQPGLIIWNENKWGKHTTGVVNLVFSC-SSLDETYEQLKARGLDCQPPATME 66
           GAK+GF +  PG+I+WN +KWG+ +   V  VFSC ++LDE Y +L+  G++   P   E
Sbjct: 40  GAKLGFSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPRVAE 99

Query: 67  YGGKEMNFRDPDGNGITLLEGA 88
           +GG+E+N  DPDGN I +LE A
Sbjct: 100 WGGRELNLLDPDGNKIMILEPA 121


>Q4EJP9.1 Q4EJP9_LISMO Putative uncharacterized protein
          Length = 122

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 8   GAKIGFDKGQPGLIIWNENKWGKHTTGVVNLVFSC-SSLDETYEQLKARGLDCQPPATME 66
           GAK+GF +  PG+I+WN +KWG+ +   V  VFSC ++LDE Y +L+  G++   P   E
Sbjct: 40  GAKLGFSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPRVAE 99

Query: 67  YGGKEMNFRDPDGNGITLLEGA 88
           +GG+E+N  DPDGN I +LE A
Sbjct: 100 WGGRELNLLDPDGNKIMILEPA 121


>Q8Y407.1 Q8Y407_LISMO Lmo2671 protein
          Length = 122

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 8   GAKIGFDKGQPGLIIWNENKWGKHTTGVVNLVFSC-SSLDETYEQLKARGLDCQPPATME 66
           GAK+GF +  PG+I+WN +KWG+ +   V  VFSC ++LDE Y +L+  G++   P   E
Sbjct: 40  GAKLGFSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPCVAE 99

Query: 67  YGGKEMNFRDPDGNGITLLEGA 88
           +GG+E+N  DPDGN I +LE A
Sbjct: 100 WGGRELNLLDPDGNKIMILEPA 121


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 603,665,924
Number of extensions: 21917216
Number of successful extensions: 37757
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 37764
Number of HSP's successfully gapped: 6
Length of query: 90
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 30
Effective length of database: 2,495,435,303
Effective search space: 74863059090
Effective search space used: 74863059090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)