BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0014.p
         (77 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6Y9.1 B3K6Y9_9BACI Pseudouridine synthase                           92   2e-17
B9YE32.1 B9YE32_9FIRM Putative uncharacterized protein                 86   1e-15
A3DC38.1 A3DC38_CLOTH Ribosomal large subunit pseudouridine synt...    78   3e-13
B4BE29.1 B4BE29_CLOTM Pseudouridine synthase                           78   3e-13
A8MM82.1 A8MM82_ALKOO Pseudouridine synthase                           77   4e-13

>B3K6Y9.1 B3K6Y9_9BACI Pseudouridine synthase
          Length = 239

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 49/51 (96%)

Query: 21 ILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          IL+EDNH+LG+ KPVNIP QEDATGDPD+L++LK+D+KER++KPGNV++GL
Sbjct: 14 ILFEDNHVLGVTKPVNIPSQEDATGDPDMLTILKQDIKERYNKPGNVFLGL 64


>B9YE32.1 B9YE32_9FIRM Putative uncharacterized protein
          Length = 225

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 48/54 (88%)

Query: 18 RFEILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          +F+ILYEDNHLL +VKPVN+ VQ D + DPDLL+LLK+D+KER+ KPGNVY+GL
Sbjct: 2  KFKILYEDNHLLIVVKPVNMAVQADDSRDPDLLTLLKQDLKERYQKPGNVYLGL 55


>A3DC38.1 A3DC38_CLOTH Ribosomal large subunit pseudouridine synthase D
          EC=5.4.99.-
          Length = 231

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 46/53 (86%)

Query: 19 FEILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
           +I++EDNHLL + KPVNIP Q+D + D D+L+LLKED+K+R++KPGNVY+GL
Sbjct: 9  IDIIFEDNHLLVVKKPVNIPTQKDKSNDSDMLTLLKEDIKKRYNKPGNVYLGL 61


>B4BE29.1 B4BE29_CLOTM Pseudouridine synthase
          Length = 231

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 46/53 (86%)

Query: 19 FEILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
           +I++EDNHLL + KPVNIP Q+D + D D+L+LLKED+K+R++KPGNVY+GL
Sbjct: 9  IDIIFEDNHLLVVKKPVNIPTQKDKSNDSDMLTLLKEDIKKRYNKPGNVYLGL 61


>A8MM82.1 A8MM82_ALKOO Pseudouridine synthase
          Length = 230

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%)

Query: 21 ILYEDNHLLGIVKPVNIPVQEDATGDPDLLSLLKEDVKERFHKPGNVYMGL 71
          IL+EDNHLL + KP NI  QED TGD D+L+LLKED+KER++KPGNVY+GL
Sbjct: 7  ILFEDNHLLVVEKPSNILSQEDHTGDLDMLTLLKEDIKERYNKPGNVYLGL 57


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.145    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 377,216,202
Number of extensions: 12294412
Number of successful extensions: 27615
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 27616
Number of HSP's successfully gapped: 47
Length of query: 77
Length of database: 3,060,696,203
Length adjustment: 48
Effective length of query: 29
Effective length of database: 2,608,487,483
Effective search space: 75646137007
Effective search space used: 75646137007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)