BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0349.0008.p (660 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6Z4.1 B3K6Z4_9BACI DNA topoisomerase IV, B subunit 1130 0.0 B1DMD3.1 B1DMD3_9BACL DNA topoisomerase IV, B subunit EC=5.99.1.3 1068 0.0 C5DAU3.1 C5DAU3_9BACI DNA topoisomerase IV, B subunit EC=5.99.1.3 770 0.0 C3IZJ4.1 C3IZJ4_9BACI DNA topoisomerase IV, B subunit EC=5.99.1.3 759 0.0 B7Y6Q7.1 B7Y6Q7_9BACI DNA topoisomerase IV, B subunit EC=5.99.1.3 759 0.0 >B3K6Z4.1 B3K6Z4_9BACI DNA topoisomerase IV, B subunit Length = 659 Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/660 (82%), Positives = 583/660 (88%), Gaps = 1/660 (0%) Query: 1 MLEQIDMFAKVSKNGSTAGTGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIV 60 M+EQIDMFA+ SKNG T +GYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIV Sbjct: 1 MVEQIDMFAESSKNGGTNRSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIV 60 Query: 61 DNAVDEHLAKFCSKIDITLRKDGSVTVLDNGRGIPTGMHKTGVPTPQVVFTILHAXXXXX 120 DNAVDEHLAK+CS+I+ITL KDGS TV DNGRGIPTGMHKTG+PTPQVVFTILHA Sbjct: 61 DNAVDEHLAKYCSRIEITLHKDGSATVYDNGRGIPTGMHKTGIPTPQVVFTILHAGGKFG 120 Query: 121 XXXXXXXXXLHGVGASVTNALSEWLEVEIYRDGKIHRQRFEYWVDKSGKEHVGEPVTGLE 180 LHGVGASVTNALSEWLEVEIYR+GKIHRQRFEYW DK GKEHVGEPVTGLE Sbjct: 121 GSGYKKSGGLHGVGASVTNALSEWLEVEIYREGKIHRQRFEYWQDKKGKEHVGEPVTGLE 180 Query: 181 ILGNTNKTGSKITFKPDIRVFPNGIALNYDTLAERVQEIAFLNSGLRIILTDERSGRQDE 240 +LGNTNKTG+KITFKPD RVF +G LNYDTLAER+QEIAFLNSGLRI+L DERSG +E Sbjct: 181 VLGNTNKTGTKITFKPDARVFTSGTHLNYDTLAERLQEIAFLNSGLRIVLKDERSGNGEE 240 Query: 241 YFYEGGASQFVQFLNEGKDVLHDVIHFSSEKDDIEVEVALQYNAGYTETLASFVNSIPTR 300 +FYEGGASQFVQFLNEGKDVLHDVIHF +EKDDIEVE+ALQYNAGYTETLASFVNSIPTR Sbjct: 241 FFYEGGASQFVQFLNEGKDVLHDVIHFYAEKDDIEVEIALQYNAGYTETLASFVNSIPTR 300 Query: 301 SGGTHETGFKTAYTRVLNEYARRTQLLKEKDKNLEGNDLREGMMAVISVKMAEVEFVGQT 360 GGTHETGFKTAYTRV+N+YAR+ LLKEKDKNLEGNDLREGMM VISVKMAEVEFVGQT Sbjct: 301 GGGTHETGFKTAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEVEFVGQT 360 Query: 361 KDQLGSASARSAVDYIVAENMARFLEENPQVAQSLLKKSIQXXXXXXXXXXXXDEIRSGK 420 KDQLGSASARSAVD IV E M FLEENPQVAQ+LLKK+IQ DE+RSGK Sbjct: 361 KDQLGSASARSAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARDEMRSGK 420 Query: 421 KRSESSNLGGKLSPAQSKDVTRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNSEK 480 KRSESSNLGGKL+PAQSKD +RTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMN EK Sbjct: 421 KRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 480 Query: 481 AKLLDVLKNDEFKXXXXXXXXXXXPDFAVEDSNYSKIIIMTDADTDGAHIQVLLLTFFYR 540 +KL D+LKNDE++ +F DSNYSKIIIMTDADTDGAHIQVLLLTFFYR Sbjct: 481 SKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHIQVLLLTFFYR 540 Query: 541 YMKPLIDAGKVYIAQPPLYKLTRKSGKLETVRYAWSDEELANYLKEFGKNFELQRYKGLG 600 YMKPLID G+VY+AQPPLYK+ KSGKLETVRYAW+DE+LANYLKEF KNFELQRYKGLG Sbjct: 541 YMKPLIDEGRVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKEF-KNFELQRYKGLG 599 Query: 601 EMNPEQLWETTMNPESRNLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENVDFTEIEE 660 EMNPEQLWETTMNPE+R LLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENV+F E EE Sbjct: 600 EMNPEQLWETTMNPETRTLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENVNFAEFEE 659 >B1DMD3.1 B1DMD3_9BACL DNA topoisomerase IV, B subunit EC=5.99.1.3 Length = 656 Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/660 (77%), Positives = 569/660 (86%), Gaps = 4/660 (0%) Query: 1 MLEQIDMFAKVSKNGSTAGTGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIV 60 M EQ+D+FAK + Y+ADDIQVLEGL AVRKRPGMYIGSTSSSGLHHLVWEIV Sbjct: 1 MAEQVDLFAKTA----APERNYEADDIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIV 56 Query: 61 DNAVDEHLAKFCSKIDITLRKDGSVTVLDNGRGIPTGMHKTGVPTPQVVFTILHAXXXXX 120 DNAVDEHLAKFC+ ID+TL K+G+VTV DNGRGIPTGMHKTG+PTPQVV+TILHA Sbjct: 57 DNAVDEHLAKFCTAIDVTLHKNGAVTVQDNGRGIPTGMHKTGIPTPQVVYTILHAGGKFG 116 Query: 121 XXXXXXXXXLHGVGASVTNALSEWLEVEIYRDGKIHRQRFEYWVDKSGKEHVGEPVTGLE 180 LHGVGASVTNALSEWLEVEI+RDGKIH+ RFEYWVD GKEHVGEPVTGLE Sbjct: 117 GGGYKKSGGLHGVGASVTNALSEWLEVEIFRDGKIHKMRFEYWVDNKGKEHVGEPVTGLE 176 Query: 181 ILGNTNKTGSKITFKPDIRVFPNGIALNYDTLAERVQEIAFLNSGLRIILTDERSGRQDE 240 I GNTN+TG+K+TFKPD RVF G +LNYDTLAER+QEIAFLNSGL++ + D+RSG++D Sbjct: 177 ITGNTNRTGTKVTFKPDGRVFQGGTSLNYDTLAERLQEIAFLNSGLKVTIKDDRSGKEDI 236 Query: 241 YFYEGGASQFVQFLNEGKDVLHDVIHFSSEKDDIEVEVALQYNAGYTETLASFVNSIPTR 300 + YEGGA QFVQ+LN+ K VLHDV+HF+ EKD+IEVEVALQYN GYTET+ASFVNSIPTR Sbjct: 237 FHYEGGARQFVQYLNDDKTVLHDVVHFAGEKDEIEVEVALQYNDGYTETIASFVNSIPTR 296 Query: 301 SGGTHETGFKTAYTRVLNEYARRTQLLKEKDKNLEGNDLREGMMAVISVKMAEVEFVGQT 360 GGTHETGFKTAYTRV+NEYAR+ LLKEK+KNLEGNDLREGMM+VI++KM+EVEFVGQT Sbjct: 297 GGGTHETGFKTAYTRVMNEYARKAGLLKEKEKNLEGNDLREGMMSVINIKMSEVEFVGQT 356 Query: 361 KDQLGSASARSAVDYIVAENMARFLEENPQVAQSLLKKSIQXXXXXXXXXXXXDEIRSGK 420 KDQLGSASARSAVD +V++ M FLEENPQVAQ LLKK++Q +EIRSGK Sbjct: 357 KDQLGSASARSAVDAVVSDKMQVFLEENPQVAQMLLKKAVQASKAREAARKAREEIRSGK 416 Query: 421 KRSESSNLGGKLSPAQSKDVTRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNSEK 480 K+SESSNL GKL+PAQSKD +R ELFIVEGDSAGGSAKQGRDSK QAILPLKGKPMN EK Sbjct: 417 KKSESSNLNGKLTPAQSKDFSRNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMNPEK 476 Query: 481 AKLLDVLKNDEFKXXXXXXXXXXXPDFAVEDSNYSKIIIMTDADTDGAHIQVLLLTFFYR 540 AKLLD+LKN+E+K P+F E+ NY+KIIIMTDADTDGAHIQVLLLTFFYR Sbjct: 477 AKLLDILKNEEYKAIISAIGAGVGPEFDAEECNYNKIIIMTDADTDGAHIQVLLLTFFYR 536 Query: 541 YMKPLIDAGKVYIAQPPLYKLTRKSGKLETVRYAWSDEELANYLKEFGKNFELQRYKGLG 600 YMKPLID G+VYIAQPPLYK+TRKSGKLETVRYAW+DE+L NYLKEFGKNFELQRYKGLG Sbjct: 537 YMKPLIDTGRVYIAQPPLYKITRKSGKLETVRYAWTDEQLQNYLKEFGKNFELQRYKGLG 596 Query: 601 EMNPEQLWETTMNPESRNLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENVDFTEIEE 660 EMNP+QLWETTM+PE+R LLQVQIEDAAKAERRVS LMGDKVDPRKRWI+ENVDFTE E Sbjct: 597 EMNPDQLWETTMDPETRTLLQVQIEDAAKAERRVSALMGDKVDPRKRWIIENVDFTEYVE 656 >C5DAU3.1 C5DAU3_9BACI DNA topoisomerase IV, B subunit EC=5.99.1.3 Length = 656 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/637 (59%), Positives = 482/637 (75%), Gaps = 13/637 (2%) Query: 22 YDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKFCSKIDITLRK 81 Y+ D IQVLEGL AVR+RPGMYIGST S GLHHLV+EIVDN+VDE LA + + I + + K Sbjct: 9 YNDDAIQVLEGLEAVRRRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVKIHK 68 Query: 82 DGSVTVLDNGRGIPTGMHKTGVPTPQVVFTILHAXXXXXXXXXXXXXXLHGVGASVTNAL 141 D S+TVLD GRG+PTGMHK G PTP+V+ T+LHA LHGVGASV NAL Sbjct: 69 DNSITVLDEGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 128 Query: 142 SEWLEVEIYRDGKIHRQRFEYWVDKSGKEHVGEPVTGLEILGNTNKTGSKITFKPDIRVF 201 SEWL V I+RDG I++QRFE H G+PVT LE +G TNKTG+ I FKPD +F Sbjct: 129 SEWLVVTIHRDGFIYQQRFE---------HGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179 Query: 202 PNGIALNYDTLAERVQEIAFLNSGLRIILTDERSGRQDEYFYEGGASQFVQFLNEGKDVL 261 NY+TL+ER++E AFL GL+I L DER+G +D ++YE G FV++LNE KDVL Sbjct: 180 ST-TTFNYETLSERLRESAFLLKGLKIELIDERTGMRDVFYYENGIEAFVEYLNEDKDVL 238 Query: 262 HDVIHFSSEKDDIEVEVALQYNAGYTETLASFVNSIPTRSGGTHETGFKTAYTRVLNEYA 321 H V++F E++ IEVE A Q+N GY+E + SFVN++ T+ GGTHE G KTA TRV NEYA Sbjct: 239 HPVVYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYA 298 Query: 322 RRTQLLKEKDKNLEGNDLREGMMAVISVKMAE--VEFVGQTKDQLGSASARSAVDYIVAE 379 R+ LLKEKDKNLEG+D+REG+ A+ISV++ E ++F GQTK +LG++ ARSAVD +V+E Sbjct: 299 RKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSE 358 Query: 380 NMARFLEENPQVAQSLLKKSIQXXXXXXXXXXXXDEIRSGKKR-SESSNLGGKLSPAQSK 438 ++ FL+ENP ++ L+KK+I+ +E RSGKKR + + L GKL+PAQS+ Sbjct: 359 HLTYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLTPAQSR 418 Query: 439 DVTRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNSEKAKLLDVLKNDEFKXXXXX 498 + + EL++VEGDSAGGSAKQGRD + QA+LPL+GK +N+EKAKL D+LKN+E Sbjct: 419 NPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEINTIIHA 478 Query: 499 XXXXXXPDFAVEDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDAGKVYIAQPPL 558 PDF+++D NY K+IIMTDADTDGAHIQVLLLTFFYRYM+PLI+AGKVYIA PPL Sbjct: 479 IGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPL 538 Query: 559 YKLTRKSGKLETVRYAWSDEELANYLKEFGKNFELQRYKGLGEMNPEQLWETTMNPESRN 618 YK+++ +GK E + YAW+DE+L +K+FGK + +QRYKGLGEMN +QLWETTMNPE+R Sbjct: 539 YKISKGTGKKEIIEYAWTDEQLKEIVKKFGKGYTIQRYKGLGEMNADQLWETTMNPETRT 598 Query: 619 LLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENVDF 655 L++V+IEDAA+AERRV+TLMGDKV+PR++WI NV F Sbjct: 599 LIRVRIEDAARAERRVTTLMGDKVEPRRKWIEANVAF 635 >C3IZJ4.1 C3IZJ4_9BACI DNA topoisomerase IV, B subunit EC=5.99.1.3 Length = 645 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/642 (58%), Positives = 480/642 (74%), Gaps = 13/642 (2%) Query: 22 YDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKFCSKIDITLRK 81 Y+ D IQVLEGL AVRKRPGMYIGST S GLHHLV+EIVDN+VDE LA + + I + + K Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIHK 68 Query: 82 DGSVTVLDNGRGIPTGMHKTGVPTPQVVFTILHAXXXXXXXXXXXXXXLHGVGASVTNAL 141 D S+TVLD GRG+P GMHK G PTP+V+ T+LHA LHGVGASV NAL Sbjct: 69 DNSITVLDEGRGMPVGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 128 Query: 142 SEWLEVEIYRDGKIHRQRFEYWVDKSGKEHVGEPVTGLEILGNTNKTGSKITFKPDIRVF 201 SEWL V I+RDG I+RQRFE H G+PVT LE +G TNKTG+ I FKPD +F Sbjct: 129 SEWLVVTIHRDGFIYRQRFE---------HGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179 Query: 202 PNGIALNYDTLAERVQEIAFLNSGLRIILTDERSGRQDEYFYEGGASQFVQFLNEGKDVL 261 + +Y+TL+ER++E AFL GL+I L DER+G ++ + YE G FV +LNE KDVL Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDERTGMREVFHYENGIEAFVAYLNEEKDVL 238 Query: 262 HDVIHFSSEKDDIEVEVALQYNAGYTETLASFVNSIPTRSGGTHETGFKTAYTRVLNEYA 321 H V++F+ E++ IEVE A Q++ GY+E + SFVN++ T+ GGTHE G KTA TRV NEYA Sbjct: 239 HPVVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYA 298 Query: 322 RRTQLLKEKDKNLEGNDLREGMMAVISVKMAE--VEFVGQTKDQLGSASARSAVDYIVAE 379 RR LLKEKDKNLEG+D+REG+ AV+SV++ E ++F GQTK +LG++ ARSAVD +V+E Sbjct: 299 RRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSE 358 Query: 380 NMARFLEENPQVAQSLLKKSIQXXXXXXXXXXXXDEIRSGKKR-SESSNLGGKLSPAQSK 438 + FL+ENP V+ L+KK+I+ +E RSGKKR + + L GKL+PAQ + Sbjct: 359 QLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLTPAQGR 418 Query: 439 DVTRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNSEKAKLLDVLKNDEFKXXXXX 498 + + EL++VEGDSAGGSAKQGRD + QA+LPL+GK +N+EKAKL D+LKN+E Sbjct: 419 NPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHA 478 Query: 499 XXXXXXPDFAVEDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDAGKVYIAQPPL 558 DF+++D NY K+IIMTDADTDGAHIQVLLLTFFYRYM+PLI+AGKVYIA PPL Sbjct: 479 IGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPL 538 Query: 559 YKLTRKSGKLETVRYAWSDEELANYLKEFGKNFELQRYKGLGEMNPEQLWETTMNPESRN 618 YK+++KSGK E V YAW+DE+L +K+ G+ + +QRYKGLGEMN +QLWETTMNP++R Sbjct: 539 YKISKKSGKNEIVEYAWTDEQLKEIMKKMGRGYTIQRYKGLGEMNADQLWETTMNPQTRT 598 Query: 619 LLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENVDFTEIEE 660 L++V+IEDAA+AERRV+TLMGDKV+PR++WI +V F EE Sbjct: 599 LIRVRIEDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEEE 640 >B7Y6Q7.1 B7Y6Q7_9BACI DNA topoisomerase IV, B subunit EC=5.99.1.3 Length = 645 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/642 (58%), Positives = 480/642 (74%), Gaps = 13/642 (2%) Query: 22 YDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKFCSKIDITLRK 81 Y+ D IQVLEGL AVRKRPGMYIGST S GLHHLV+EIVDN+VDE LA + + I + + K Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIHK 68 Query: 82 DGSVTVLDNGRGIPTGMHKTGVPTPQVVFTILHAXXXXXXXXXXXXXXLHGVGASVTNAL 141 D S+TVLD GRG+P GMHK G PTP+V+ T+LHA LHGVGASV NAL Sbjct: 69 DNSITVLDEGRGMPVGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 128 Query: 142 SEWLEVEIYRDGKIHRQRFEYWVDKSGKEHVGEPVTGLEILGNTNKTGSKITFKPDIRVF 201 SEWL V I+RDG I+RQRFE H G+PVT LE +G TNKTG+ I FKPD +F Sbjct: 129 SEWLVVTIHRDGFIYRQRFE---------HGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179 Query: 202 PNGIALNYDTLAERVQEIAFLNSGLRIILTDERSGRQDEYFYEGGASQFVQFLNEGKDVL 261 + +Y+TL+ER++E AFL GL+I L DER+G ++ + YE G FV +LNE KDVL Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDERTGMREVFHYENGIEAFVAYLNEEKDVL 238 Query: 262 HDVIHFSSEKDDIEVEVALQYNAGYTETLASFVNSIPTRSGGTHETGFKTAYTRVLNEYA 321 H V++F+ E++ IEVE A Q++ GY+E + SFVN++ T+ GGTHE G KTA TRV NEYA Sbjct: 239 HPVVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYA 298 Query: 322 RRTQLLKEKDKNLEGNDLREGMMAVISVKMAE--VEFVGQTKDQLGSASARSAVDYIVAE 379 RR LLKEKDKNLEG+D+REG+ AV+SV++ E ++F GQTK +LG++ ARSAVD +V+E Sbjct: 299 RRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSE 358 Query: 380 NMARFLEENPQVAQSLLKKSIQXXXXXXXXXXXXDEIRSGKKR-SESSNLGGKLSPAQSK 438 + FL+ENP V+ L+KK+I+ +E RSGKKR + + L GKL+PAQ + Sbjct: 359 QLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLTPAQGR 418 Query: 439 DVTRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNSEKAKLLDVLKNDEFKXXXXX 498 + + EL++VEGDSAGGSAKQGRD + QA+LPL+GK +N+EKAKL D+LKN+E Sbjct: 419 NPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHA 478 Query: 499 XXXXXXPDFAVEDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDAGKVYIAQPPL 558 DF+++D NY K+IIMTDADTDGAHIQVLLLTFFYRYM+PLI+AGKVYIA PPL Sbjct: 479 IGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPL 538 Query: 559 YKLTRKSGKLETVRYAWSDEELANYLKEFGKNFELQRYKGLGEMNPEQLWETTMNPESRN 618 YK+++KSGK E V YAW+DE+L +K+ G+ + +QRYKGLGEMN +QLWETTMNP++R Sbjct: 539 YKISKKSGKNEIVEYAWTDEQLKEIMKKMGRGYTIQRYKGLGEMNADQLWETTMNPQTRT 598 Query: 619 LLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVENVDFTEIEE 660 L++V+IEDAA+AERRV+TLMGDKV+PR++WI +V F EE Sbjct: 599 LIRVRIEDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEEE 640 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,707,525,738 Number of extensions: 151276138 Number of successful extensions: 315702 Number of sequences better than 1.0e-05: 9239 Number of HSP's gapped: 277051 Number of HSP's successfully gapped: 10431 Length of query: 660 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 517 Effective length of database: 1,713,491,058 Effective search space: 885874876986 Effective search space used: 885874876986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 135 (56.6 bits)