BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0349.0007.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6Z5.1 B3K6Z5_9BACI Bacitracin transport permease protein BcrB 538 e-151 B1DES5.1 B1DES5_9BACL ABC transporter, permease component 429 e-118 B4BJY0.1 B4BJY0_9BACI Bacitracin transport permease protein BcrB 375 e-102 A4ING2.1 A4ING2_GEOTN Bacitracin transport permease protein BcrB 375 e-102 B7GHZ3.1 B7GHZ3_ANOFW ABC-type multidrug transport system, perme... 370 e-101 >B3K6Z5.1 B3K6Z5_9BACI Bacitracin transport permease protein BcrB Length = 329 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 247/329 (75%), Positives = 296/329 (89%) Query: 4 LTSLIPLIRNECLKIIKKKRFYXXXXXXXXXXPMFTYAQMRIADRNKDKFNSDWRLEIQQ 63 +++L+PLI+NEC+KIIK+KRFY PMFTYAQM+ A+R+++KFNSDWRLE+QQ Sbjct: 1 MSNLLPLIKNECIKIIKRKRFYVVLLVLLVLVPMFTYAQMKSAERSREKFNSDWRLELQQ 60 Query: 64 QITDNQNSLGSDRIPEEWKSYRKIFVQQLQYYLDHDVNPNEPSGVTFTREFLDNSVSLFI 123 +ITDN+NSL SDR+P+EWK YR+IF+QQ+QYYL HDVNPN+P+GVTFTREFL+N++SLFI Sbjct: 61 RITDNENSLSSDRVPDEWKRYRQIFIQQMQYYLQHDVNPNQPNGVTFTREFLNNAISLFI 120 Query: 124 PLLIMAVASDLVSGERTTGTIKMLLTRPVKRWKVLFSKMAALLMFVSLIVLAAFVISYLI 183 PLLIMA+ASD+VSGERTTGTIKMLLTRPVKRWKVL SK+ AL+MF SLIV++ FVI+YLI Sbjct: 121 PLLIMAIASDIVSGERTTGTIKMLLTRPVKRWKVLLSKLVALIMFTSLIVVSTFVIAYLI 180 Query: 184 SGLAFGYKGFNVPVFTGFQLNGDTVDMSAVHAVPQWKYLLMQGGLIWFVSVVVALLAFMV 243 SGLAFGYKGF++PVFTGFQ+ G VDMS VHAVPQWKYLLMQGGL+WFV V V +LAFMV Sbjct: 181 SGLAFGYKGFDIPVFTGFQIVGSDVDMSGVHAVPQWKYLLMQGGLVWFVGVCVGMLAFMV 240 Query: 244 SVLVRSTAASIVVMMAALIAGTILTNMASAWTTAKYLFMVNLGLTGYLAGSPAPIEGMTL 303 SVLVRSTAASIV+MMAALIAG ILTNMASAW++AKYLFMVNL LT YLAG+ PIEGMTL Sbjct: 241 SVLVRSTAASIVIMMAALIAGNILTNMASAWSSAKYLFMVNLNLTSYLAGNLPPIEGMTL 300 Query: 304 SFSMGVLAVWGILSVIISFAVFTKRDILN 332 +FS+ VLA+W I +VI++F+VFT+RDILN Sbjct: 301 NFSLAVLAIWAICAVIVAFSVFTRRDILN 329 >B1DES5.1 B1DES5_9BACL ABC transporter, permease component Length = 331 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/332 (63%), Positives = 264/332 (79%), Gaps = 1/332 (0%) Query: 1 VKLLTSLIPLIRNECLKIIKKKRFYXXXXXXXXXXPMFTYAQMRIADRNKDKFNSDWRLE 60 +K L L+PLI+NE LKI KKKRF+ P+FTYAQ RI + NK F DWR + Sbjct: 1 MKALDRLLPLIQNETLKIWKKKRFFVIVLVLLILIPIFTYAQHRITETNKKNFK-DWRNQ 59 Query: 61 IQQQITDNQNSLGSDRIPEEWKSYRKIFVQQLQYYLDHDVNPNEPSGVTFTREFLDNSVS 120 + QQI++ QN L SDRIP+EWK R+I VQQLQYYLDHDVNP+ P+GVTFTR FL N+V+ Sbjct: 60 LVQQISEYQNILSSDRIPDEWKRSRRIAVQQLQYYLDHDVNPDSPNGVTFTRSFLSNAVT 119 Query: 121 LFIPLLIMAVASDLVSGERTTGTIKMLLTRPVKRWKVLFSKMAALLMFVSLIVLAAFVIS 180 LF PLL++A+ASDLVSGERT GTIKMLLTRPV+RWK+LFSK+ AL ++VSLI++ + V+ Sbjct: 120 LFFPLLVLALASDLVSGERTAGTIKMLLTRPVRRWKILFSKLVALSLYVSLIIVISAVLC 179 Query: 181 YLISGLAFGYKGFNVPVFTGFQLNGDTVDMSAVHAVPQWKYLLMQGGLIWFVSVVVALLA 240 YLISG FGYKG+ +PVFTGF +NG +V+ S VHA+PQW YLLM+ GLIW ++ VALL+ Sbjct: 180 YLISGAVFGYKGWEMPVFTGFVINGSSVESSFVHAIPQWLYLLMEAGLIWVSAMTVALLS 239 Query: 241 FMVSVLVRSTAASIVVMMAALIAGTILTNMASAWTTAKYLFMVNLGLTGYLAGSPAPIEG 300 MVSVLVRSTAASIV MMAA+I+GT+L+NM S+W +AK++F VNL LT YL GSP PI G Sbjct: 240 LMVSVLVRSTAASIVTMMAAVISGTLLSNMTSSWHSAKFIFSVNLQLTNYLEGSPPPITG 299 Query: 301 MTLSFSMGVLAVWGILSVIISFAVFTKRDILN 332 MTL FS+ +LA WG+ S+ +SF VFTK+DILN Sbjct: 300 MTLGFSLVILACWGVASLAVSFFVFTKQDILN 331 >B4BJY0.1 B4BJY0_9BACI Bacitracin transport permease protein BcrB Length = 326 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 240/325 (73%), Gaps = 1/325 (0%) Query: 7 LIPLIRNECLKIIKKKRFYXXXXXXXXXXPMFTYAQMRIADRNKDKF-NSDWRLEIQQQI 65 +I L+ NE LKI++KKR + +FTYAQ R + K + +DWR ++QQQI Sbjct: 1 MIKLVYNEMLKIVRKKRLWVIAAIVAVLVALFTYAQYRETEELKKRLGTTDWRTQLQQQI 60 Query: 66 TDNQNSLGSDRIPEEWKSYRKIFVQQLQYYLDHDVNPNEPSGVTFTREFLDNSVSLFIPL 125 D QN L S + EEW+ Y +I +QQ QYYL+HD+NP+ P TF R F++N++ LF+PL Sbjct: 61 VDLQNRLQSPSVSEEWRKYLQIRLQQQQYYLEHDINPSAPGAPTFMRVFIENAIDLFLPL 120 Query: 126 LIMAVASDLVSGERTTGTIKMLLTRPVKRWKVLFSKMAALLMFVSLIVLAAFVISYLISG 185 L+M VA+DLVS E +TGTIK+LL RPVKRWKVL SK ALL+ VS I+L V+SY+ISG Sbjct: 121 LVMVVAADLVSSEASTGTIKLLLVRPVKRWKVLLSKYIALLLSVSFIMLTTAVLSYVISG 180 Query: 186 LAFGYKGFNVPVFTGFQLNGDTVDMSAVHAVPQWKYLLMQGGLIWFVSVVVALLAFMVSV 245 L FGY GF +P+ TGF G+ ++ + VH +PQW+Y+LM+ GL FVSVVV L FM+SV Sbjct: 181 LVFGYGGFRLPLLTGFVPQGEDLNTTNVHMIPQWEYVLMELGLATFVSVVVGTLTFMLSV 240 Query: 246 LVRSTAASIVVMMAALIAGTILTNMASAWTTAKYLFMVNLGLTGYLAGSPAPIEGMTLSF 305 L+RSTAA + +M+A+LI+G IL+NM S+W +AKYLFMVNL LT Y+ G+ P+EGMTL F Sbjct: 241 LLRSTAAVMGIMLASLISGAILSNMVSSWHSAKYLFMVNLRLTDYIKGTTPPVEGMTLGF 300 Query: 306 SMGVLAVWGILSVIISFAVFTKRDI 330 SM VLAVWG++++I++F VFT+RD+ Sbjct: 301 SMAVLAVWGLVALIVAFVVFTRRDV 325 >A4ING2.1 A4ING2_GEOTN Bacitracin transport permease protein BcrB Length = 326 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 240/325 (73%), Gaps = 1/325 (0%) Query: 7 LIPLIRNECLKIIKKKRFYXXXXXXXXXXPMFTYAQMRIADRNKDKF-NSDWRLEIQQQI 65 +I L+ NE LKI++KKR + +FTYAQ R + K + +DWR ++QQQI Sbjct: 1 MIKLVYNEMLKIVRKKRLWVIAAIVAVLVALFTYAQYRETEELKKRLGTTDWRTQLQQQI 60 Query: 66 TDNQNSLGSDRIPEEWKSYRKIFVQQLQYYLDHDVNPNEPSGVTFTREFLDNSVSLFIPL 125 D QN L S + EEW+ Y +I +QQ QYYL+HD+NP+ P TF R F++N++ LF+PL Sbjct: 61 VDLQNRLQSPSMSEEWRKYLQIRLQQQQYYLEHDINPSAPGAPTFMRVFIENAIDLFLPL 120 Query: 126 LIMAVASDLVSGERTTGTIKMLLTRPVKRWKVLFSKMAALLMFVSLIVLAAFVISYLISG 185 L+M VA+DLVS E +TGTIK+LL RPVKRWKVL SK ALL+ VS I+L V+SY+ISG Sbjct: 121 LVMVVAADLVSSEASTGTIKLLLVRPVKRWKVLLSKYIALLLSVSFIMLTTAVLSYVISG 180 Query: 186 LAFGYKGFNVPVFTGFQLNGDTVDMSAVHAVPQWKYLLMQGGLIWFVSVVVALLAFMVSV 245 L FGY GF +P+ TGF G+ ++ + VH +PQW+Y+LM+ GL FVSVVV L FM+SV Sbjct: 181 LVFGYGGFRLPLLTGFVPQGEDLNTTNVHMIPQWEYVLMELGLATFVSVVVGTLTFMLSV 240 Query: 246 LVRSTAASIVVMMAALIAGTILTNMASAWTTAKYLFMVNLGLTGYLAGSPAPIEGMTLSF 305 L+RSTAA + +M+A+LI+G IL+NM S+W +AKYLFMVNL LT Y+ G+ P+EGMTL F Sbjct: 241 LLRSTAAVMGIMLASLISGAILSNMVSSWHSAKYLFMVNLRLTDYIKGTTPPVEGMTLGF 300 Query: 306 SMGVLAVWGILSVIISFAVFTKRDI 330 SM VLAVWG++++I++F VFT+RD+ Sbjct: 301 SMAVLAVWGLVALIVAFVVFTRRDV 325 >B7GHZ3.1 B7GHZ3_ANOFW ABC-type multidrug transport system, permease component Length = 326 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/325 (54%), Positives = 240/325 (73%), Gaps = 1/325 (0%) Query: 7 LIPLIRNECLKIIKKKRFYXXXXXXXXXXPMFTYAQMRIADRNKDKF-NSDWRLEIQQQI 65 +I L+ NE LKI++KKR + +FTYAQ + + +++ +DWR ++QQQI Sbjct: 1 MINLVYNEMLKIVRKKRLFIIAAIVAVLVSLFTYAQFKQIETIRERIGTTDWRTQLQQQI 60 Query: 66 TDNQNSLGSDRIPEEWKSYRKIFVQQLQYYLDHDVNPNEPSGVTFTREFLDNSVSLFIPL 125 D QN L S I E+WK + KI +QQ QYYLD+D+NP P TF R F++NS+ LF+PL Sbjct: 61 IDTQNRLNSTGISEDWKKFLKIRLQQQQYYLDNDINPMAPGAPTFMRMFIENSIELFLPL 120 Query: 126 LIMAVASDLVSGERTTGTIKMLLTRPVKRWKVLFSKMAALLMFVSLIVLAAFVISYLISG 185 L+M VA+DLVS E + GTIK+LLTRPVKRWK+L SK A+++ S +V ++SY ISG Sbjct: 121 LVMVVAADLVSSEASGGTIKLLLTRPVKRWKILMSKYIAMMLSTSFVVFFVALLSYAISG 180 Query: 186 LAFGYKGFNVPVFTGFQLNGDTVDMSAVHAVPQWKYLLMQGGLIWFVSVVVALLAFMVSV 245 + FGY G+N+P+ TGF + G+ ++ SAVH +PQWKYLL++ GL +FVS+VV L FM+SV Sbjct: 181 IVFGYGGWNLPLLTGFSIQGEELNTSAVHLIPQWKYLLIEFGLAFFVSLVVGTLTFMLSV 240 Query: 246 LVRSTAASIVVMMAALIAGTILTNMASAWTTAKYLFMVNLGLTGYLAGSPAPIEGMTLSF 305 L+RSTAA + +M+AALI+G IL+NM S+WT+AKYLFMVNL LT Y+ G PI+GMTLSF Sbjct: 241 LLRSTAAVMGIMLAALISGAILSNMVSSWTSAKYLFMVNLRLTSYITGMAPPIDGMTLSF 300 Query: 306 SMGVLAVWGILSVIISFAVFTKRDI 330 SM VLA W ++++I+SF VFTKRD+ Sbjct: 301 SMTVLATWALVALIVSFYVFTKRDV 325 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,764,415,570 Number of extensions: 68969036 Number of successful extensions: 322923 Number of sequences better than 1.0e-05: 353 Number of HSP's gapped: 322625 Number of HSP's successfully gapped: 353 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)