BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0349.0006.p (326 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6Z6.1 B3K6Z6_9BACI ABC transporter related 462 e-128 B7GHZ2.1 B7GHZ2_ANOFW ABC-type multidrug transport system, ATPas... 341 6e-92 B1DES4.1 B1DES4_9BACL ABC transporter related 340 9e-92 C3IZR8.1 C3IZR8_9BACI ABC transporter related 339 3e-91 B7Y6Y3.1 B7Y6Y3_9BACI ABC transporter related protein 339 3e-91 >B3K6Z6.1 B3K6Z6_9BACI ABC transporter related Length = 322 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/315 (71%), Positives = 267/315 (84%) Query: 12 VVLSVEGVRKKIGRKWIIDDVTFDVREGEVFGFLGPNGAGKTTTIRMLVDLIRPSEGEIT 71 +VLSV+ V+KKIGRKWII DV+FDVR GE+FGFLGPNGAGKTTTIRMLVDLI+PS G I Sbjct: 8 IVLSVQHVKKKIGRKWIIHDVSFDVRAGEIFGFLGPNGAGKTTTIRMLVDLIKPSSGRIE 67 Query: 72 VCGYNVNRQPEKALQYVGSIVENPEVYTYLTGWENLQHFARMQPGVDKARIDEVVDIVRL 131 VCGY+VNRQ E+AL+Y+GSIVENPE+Y+YLTGWENL+HFARMQPG++ RI EVVD VRL Sbjct: 68 VCGYDVNRQQEQALRYIGSIVENPEMYSYLTGWENLEHFARMQPGINDQRIQEVVDTVRL 127 Query: 132 DQRIHDKVSTYSLGMRQRLGIAQALLGRPRLLILDEPTNGLDPKGIKELREFIRQLAAEG 191 D+RIHDKVSTYSLGMRQRLGIAQALLGRP+LLILDEPTNGLDPKGIKE+R+FI QLA EG Sbjct: 128 DRRIHDKVSTYSLGMRQRLGIAQALLGRPKLLILDEPTNGLDPKGIKEMRQFIHQLAEEG 187 Query: 192 LAVFVSSHLLSEIQLLCDRVAIISKGRVLAVGGVEDLVARNSPYVLWELEPLSRAKKILG 251 LAVFVSSHLLSEIQLLCDRVAIIS GRVLAVG V++L+A +S +V+W+L P + K+IL Sbjct: 188 LAVFVSSHLLSEIQLLCDRVAIISSGRVLAVGEVDELIAGSSDHVIWDLNPAVQGKRILQ 247 Query: 252 SRPDISLMELDEVTLDDSIIAGMGANSLVTVMEEDLIPEIVAVLVTAEVEVRAVHKINPT 311 +++ E LDD+++AGM +++VT M V LV A V+VR VH+INPT Sbjct: 248 KLDYCEIVDRPEDVLDDNVLAGMSPDAVVTRMHAAHASRAVERLVGAGVQVREVHRINPT 307 Query: 312 LEQLFLKLTEGETID 326 LEQLFL++TEGE+I+ Sbjct: 308 LEQLFLQMTEGESIE 322 >B7GHZ2.1 B7GHZ2_ANOFW ABC-type multidrug transport system, ATPase component Length = 303 Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 176/315 (55%), Positives = 227/315 (72%), Gaps = 18/315 (5%) Query: 14 LSVEGVRKKIGRKWIIDDVTFDVREGEVFGFLGPNGAGKTTTIRMLVDLIRPSEGEITVC 73 L V+ VRK IG+K II ++F +++GEVFGFLGPNGAGKTTTIRMLV LIRP+ G I++C Sbjct: 5 LVVQNVRKTIGKKEIIKGLSFSLKKGEVFGFLGPNGAGKTTTIRMLVGLIRPTSGTISIC 64 Query: 74 GYNVNRQPEKALQYVGSIVENPEVYTYLTGWENLQHFARMQPGVDKARIDEVVDIVRLDQ 133 GY++ +Q KA+Q++G IVENPE+Y YL+GWENL+HFARM PG+ RI EVV++V L Sbjct: 65 GYDLQKQFTKAIQHIGCIVENPELYPYLSGWENLEHFARMVPGITAHRIQEVVELVGLQN 124 Query: 134 RIHDKVSTYSLGMRQRLGIAQALLGRPRLLILDEPTNGLDPKGIKELREFIRQLA-AEGL 192 RIHD V TYSLGMRQRLGIAQALLG+P +LILDEPTNGLDP GI+E+R+FIR LA E L Sbjct: 125 RIHDLVRTYSLGMRQRLGIAQALLGKPTVLILDEPTNGLDPVGIREMRQFIRSLAEKEQL 184 Query: 193 AVFVSSHLLSEIQLLCDRVAIISKGRVLAVGGVEDLVARNSPYVLWELEPLSRAKKILGS 252 +V VSSHLLSEIQL+CDRVAI+SKG ++ + VE L+ + W ++P+ +AK+IL Sbjct: 185 SVLVSSHLLSEIQLMCDRVAIMSKGEIIRIDTVEHLLQEQA-RTYWSVDPVDKAKQILQ- 242 Query: 253 RPDISLMELDEVTLDDSIIAGMGANSLVTVMEED-LIPEIVAVLVTAEVEVRAVHKINPT 311 +++ + G +LVT+ E + I A L+ A V V + PT Sbjct: 243 --------------NETTVLGEKDGALVTMYESNETIARCNARLIEAGVHVSGIEHKLPT 288 Query: 312 LEQLFLKLTEGETID 326 LE LF++LT GETID Sbjct: 289 LEDLFIELTGGETID 303 >B1DES4.1 B1DES4_9BACL ABC transporter related Length = 271 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 169/270 (62%), Positives = 207/270 (76%), Gaps = 1/270 (0%) Query: 56 IRMLVDLIRPSEGEITVCGYNVNRQPEKALQYVGSIVENPEVYTYLTGWENLQHFARMQP 115 IRMLVDLI+PS GEI +CG ++ R PE AL+ VG IVENPE Y+YLTGWENL+HFARMQ Sbjct: 2 IRMLVDLIKPSSGEILICGEDIGRNPEAALRNVGCIVENPEAYSYLTGWENLEHFARMQR 61 Query: 116 GVDKARIDEVVDIVRLDQRIHDKVSTYSLGMRQRLGIAQALLGRPRLLILDEPTNGLDPK 175 G+D RI EV IV LD RIHDKV TYSLGMRQRLGIAQALLGRP+LLILDEPTNGLDPK Sbjct: 62 GIDNERIREVAAIVGLDDRIHDKVKTYSLGMRQRLGIAQALLGRPKLLILDEPTNGLDPK 121 Query: 176 GIKELREFIRQLAAEGLAVFVSSHLLSEIQLLCDRVAIISKGRVLAVGGVEDLVARNSPY 235 GIKELREF+R LA +GL++F+SSHLLSEIQL+CDRVAIIS G VLAVG V++L+ Y Sbjct: 122 GIKELREFVRMLANQGLSLFISSHLLSEIQLMCDRVAIISHGEVLAVGTVDELIRGADNY 181 Query: 236 VLWELEPLSRAKKILGSRPDISLMELDEVTLDDSIIAGMGANSLVTVMEEDLIPEIVAVL 295 V+W+ E +++L D+ L+ E +D+S++ GM +L+T M D I +V Sbjct: 182 VVWQFEQPEEGRRLLAGEGDVELVLEHEKRIDESLLTGM-KEALITDMNPDRISSLVEKA 240 Query: 296 VTAEVEVRAVHKINPTLEQLFLKLTEGETI 325 V A + + +VH I PTLEQLFL++TEGE+I Sbjct: 241 VRAGIGIVSVHSIAPTLEQLFLRMTEGESI 270 >C3IZR8.1 C3IZR8_9BACI ABC transporter related Length = 304 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 179/316 (56%), Positives = 228/316 (72%), Gaps = 17/316 (5%) Query: 12 VVLSVEGVRKKIGRKWIIDDVTFDVREGEVFGFLGPNGAGKTTTIRMLVDLIRPSEGEIT 71 V L+V+ +RK I K II ++F++ EGEVFGFLGPNGAGKTTTIRMLV LIRP+ G + Sbjct: 5 VTLAVKELRKTIRGKEIIKGISFELHEGEVFGFLGPNGAGKTTTIRMLVGLIRPTSGTVA 64 Query: 72 VCGYNVNRQPEKALQYVGSIVENPEVYTYLTGWENLQHFARMQPGVDKARIDEVVDIVRL 131 +CGY+++RQ A++ +G IVENPE+Y YLTGWENL+HFARM PG+ RI EV +V L Sbjct: 65 ICGYDLHRQFTDAIRQIGCIVENPEMYPYLTGWENLEHFARMMPGISTDRIMEVAKLVDL 124 Query: 132 DQRIHDKVSTYSLGMRQRLGIAQALLGRPRLLILDEPTNGLDPKGIKELREFIRQLA-AE 190 +QRIHD+V TYSLGMRQRLGIAQALLG+P++LILDEPTNGLDP GI+E+R FIR LA E Sbjct: 125 EQRIHDRVGTYSLGMRQRLGIAQALLGKPKVLILDEPTNGLDPAGIREMRAFIRFLAETE 184 Query: 191 GLAVFVSSHLLSEIQLLCDRVAIISKGRVLAVGGVEDLVARNSPYVLWELEPLSRAKKIL 250 GL+V VSSHLLSEIQL+CDRVAI++KGR+LAV VE L+ + + V+W+ P RA+ +L Sbjct: 185 GLSVLVSSHLLSEIQLMCDRVAIMAKGRLLAVDTVERLLNQQA-RVVWKAAPTDRARALL 243 Query: 251 GSRPDISLMELDEVTLDDSIIAGMGANSLVTVMEEDLIPEIVAVLVTAEVEVRAVHKINP 310 + ++ + DE T +VT E + A LV A V V + P Sbjct: 244 AAETEV--LRADEET-------------IVTPYEPSRLAAWNAKLVQAGVSVSEIEPRLP 288 Query: 311 TLEQLFLKLTEGETID 326 TLE LF++LT GETI+ Sbjct: 289 TLEDLFIELTGGETIE 304 >B7Y6Y3.1 B7Y6Y3_9BACI ABC transporter related protein Length = 304 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 179/316 (56%), Positives = 228/316 (72%), Gaps = 17/316 (5%) Query: 12 VVLSVEGVRKKIGRKWIIDDVTFDVREGEVFGFLGPNGAGKTTTIRMLVDLIRPSEGEIT 71 V L+V+ +RK I K II ++F++ EGEVFGFLGPNGAGKTTTIRMLV LIRP+ G + Sbjct: 5 VTLAVKELRKTIRGKEIIKGISFELHEGEVFGFLGPNGAGKTTTIRMLVGLIRPTSGTVA 64 Query: 72 VCGYNVNRQPEKALQYVGSIVENPEVYTYLTGWENLQHFARMQPGVDKARIDEVVDIVRL 131 +CGY+++RQ A++ +G IVENPE+Y YLTGWENL+HFARM PG+ RI EV +V L Sbjct: 65 ICGYDLHRQFTDAIRQIGCIVENPEMYPYLTGWENLEHFARMMPGISTDRIMEVAKLVDL 124 Query: 132 DQRIHDKVSTYSLGMRQRLGIAQALLGRPRLLILDEPTNGLDPKGIKELREFIRQLA-AE 190 +QRIHD+V TYSLGMRQRLGIAQALLG+P++LILDEPTNGLDP GI+E+R FIR LA E Sbjct: 125 EQRIHDRVGTYSLGMRQRLGIAQALLGKPKVLILDEPTNGLDPAGIREMRAFIRFLAETE 184 Query: 191 GLAVFVSSHLLSEIQLLCDRVAIISKGRVLAVGGVEDLVARNSPYVLWELEPLSRAKKIL 250 GL+V VSSHLLSEIQL+CDRVAI++KGR+LAV VE L+ + + V+W+ P RA+ +L Sbjct: 185 GLSVLVSSHLLSEIQLMCDRVAIMAKGRLLAVDTVERLLNQQA-RVVWKAAPTDRARALL 243 Query: 251 GSRPDISLMELDEVTLDDSIIAGMGANSLVTVMEEDLIPEIVAVLVTAEVEVRAVHKINP 310 + ++ + DE T +VT E + A LV A V V + P Sbjct: 244 AAETEV--LRADEET-------------IVTPYEPSRLAAWNAKLVQAGVSVSEIEPRLP 288 Query: 311 TLEQLFLKLTEGETID 326 TLE LF++LT GETI+ Sbjct: 289 TLEDLFIELTGGETIE 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,904,337,305 Number of extensions: 79637672 Number of successful extensions: 538755 Number of sequences better than 1.0e-05: 94898 Number of HSP's gapped: 426994 Number of HSP's successfully gapped: 102706 Length of query: 326 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 190 Effective length of database: 1,779,438,163 Effective search space: 338093250970 Effective search space used: 338093250970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)