BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0349.0004.p
         (64 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1PFV4.1 C1PFV4_BACCO SCP-like extracellular protein                  107   4e-22
B1DJ59.1 B1DJ59_9BACL SCP-like extracellular                          104   2e-21
B7GJR9.1 B7GJR9_ANOFW Uncharacterized protein with SCP/PR1 domains    103   4e-21
B3K6Z8.1 B3K6Z8_9BACI SCP-like extracellular                          103   4e-21
Q65KA8.1 Q65KA8_BACLD YkwD                                            102   1e-20

>C1PFV4.1 C1PFV4_BACCO SCP-like extracellular protein
          Length = 245

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFDNN--YWV 58
           MM  FG++YQYAGENIAMGQ+TPQEVM AWMNS GHRANIL+ NF +IGVG+  N  YW 
Sbjct: 180 MMKQFGISYQYAGENIAMGQQTPQEVMNAWMNSEGHRANILNKNFTHIGVGYVENGHYWT 239

Query: 59  QEFIGK 64
           QEFIGK
Sbjct: 240 QEFIGK 245


>B1DJ59.1 B1DJ59_9BACL SCP-like extracellular
          Length = 279

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 53/63 (84%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFDNNYWVQE 60
           MM +FGVTY YAGENIAMGQ++P EVMTAWMNSAGHRANIL+AN+  IGV + N  WVQE
Sbjct: 217 MMKSFGVTYNYAGENIAMGQKSPTEVMTAWMNSAGHRANILNANYTKIGVAYVNGEWVQE 276

Query: 61  FIG 63
           F G
Sbjct: 277 FTG 279


>B7GJR9.1 B7GJR9_ANOFW Uncharacterized protein with SCP/PR1 domains
          Length = 261

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 54/66 (81%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFD--NNYWV 58
           MM  FGV+Y+ AGENIA GQRTPQEV+ AWMNSAGHRANIL+ NF +IGVGFD   NYW 
Sbjct: 196 MMRDFGVSYRTAGENIAKGQRTPQEVVNAWMNSAGHRANILNRNFTHIGVGFDGNGNYWT 255

Query: 59  QEFIGK 64
           Q FIGK
Sbjct: 256 QMFIGK 261


>B3K6Z8.1 B3K6Z8_9BACI SCP-like extracellular
          Length = 247

 Score =  103 bits (257), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 52/64 (81%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGFDNNYWVQE 60
           MM A+G++Y YAGENIA GQRTPQEVM +WMNS GHR NILS NF  IGVG+ N YWVQE
Sbjct: 184 MMKAYGISYGYAGENIAKGQRTPQEVMNSWMNSQGHRENILSPNFTMIGVGYYNGYWVQE 243

Query: 61  FIGK 64
           FI +
Sbjct: 244 FISQ 247


>Q65KA8.1 Q65KA8_BACLD YkwD
          Length = 240

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 2/66 (3%)

Query: 1   MMSAFGVTYQYAGENIAMGQRTPQEVMTAWMNSAGHRANILSANFNYIGVGF--DNNYWV 58
           MM  FG+TY+ AGENIA GQ+TPQEV+ AWMNS GHR NI++ NF +IGVG+  D NYW 
Sbjct: 175 MMKKFGITYRTAGENIAKGQKTPQEVVKAWMNSEGHRKNIMNPNFTHIGVGYVKDGNYWT 234

Query: 59  QEFIGK 64
           Q+FIGK
Sbjct: 235 QQFIGK 240


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 396,702,280
Number of extensions: 12219550
Number of successful extensions: 24183
Number of sequences better than 1.0e-05: 265
Number of HSP's gapped: 24111
Number of HSP's successfully gapped: 265
Length of query: 64
Length of database: 3,060,696,203
Length adjustment: 36
Effective length of query: 28
Effective length of database: 2,721,539,663
Effective search space: 76203110564
Effective search space used: 76203110564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)