BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0015.p (381 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4C3T9.1 A4C3T9_9GAMM Putative uncharacterized protein 143 3e-32 Q2C6N1.1 Q2C6N1_9GAMM Putative uncharacterized protein 124 1e-26 Q1ZSJ9.1 Q1ZSJ9_9VIBR Putative uncharacterized protein 123 4e-26 Q6LS77.1 Q6LS77_PHOPR Putative uncharacterized protein 119 4e-25 Q1Z518.1 Q1Z518_PHOPR Putative uncharacterized protein 117 1e-24 >A4C3T9.1 A4C3T9_9GAMM Putative uncharacterized protein Length = 378 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 9/349 (2%) Query: 5 VAQQLNIWHEFDGKGDTSIEVLEQLCRAYTSKSGVSVIPEVMNITVLTARLQQIKAGGAG 64 +A ++++ H ++ E + L ++ K+GV + ++ L R+ + Sbjct: 9 IATEISVVHTYEN------EAFKHLIEKFSEKTGVKIKISWLDQADLKVRILRSAEKNVT 62 Query: 65 PHMALVPADMAGYAEGAMYSEIPEKFWSMSGLPDVDIRSSMQSNGRQYGIPILKGNHLVL 124 P + +VPAD G E +SEIP + +S + + ++ NGR GIPI+ GNHL+L Sbjct: 63 PDVIIVPADHLGLDERVHFSEIPAEL--ISSDINQNTLATASINGRTLGIPIISGNHLLL 120 Query: 125 YYNPEIYPEAPASWXXXXXXXXXXXXKGIVPVAADLADPYCFIPFLTAFGGWPLKEGNPD 184 YYN + E W K + ++ + Y FIPFLTAF P+ P+ Sbjct: 121 YYNKKWVKEVATDWQTLIAQREQLP-KSLHLISWSFMEMYWFIPFLTAFDAKPIIGVMPN 179 Query: 185 LASFEMDAALRFVQRQIAHKVLGSFHGPTELLDRFXXXXXXXXXXXXXXYNYLDLQMRDR 244 + E+ AL+FV + +++ + +RF + + D Sbjct: 180 FKNDEVQNALQFVWQLAKQQIVDNLCDYRCAFERFSQGESAYTINGVWAFGQFKQSLGDD 239 Query: 245 LLVGPLPSINGNPAASMSSSIGLVFPQHSLESEQADELLSFAAYLLNESSQLEWAERVQR 304 + PLP+IN + S SS + FP++SL E+ + L FA ++ +E+ Q E ++ Sbjct: 240 FGLAPLPNINHHAMKSYYSSYVVAFPKNSLNGEKKEILTQFALFMQSEALQNEIMTQLND 299 Query: 305 IPVHSRVLDNIKAAASPARAKLITCLENARNMPIEPVMRNIWDAMAVGL 353 +PVH+++L I+ + + +I L+ + MP M IW+AM G Sbjct: 300 LPVHNKILAKIRQSDNQYLKIIIKALDQSVAMPTNQNMAIIWEAMLKGF 348 >Q2C6N1.1 Q2C6N1_9GAMM Putative uncharacterized protein Length = 381 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 14/337 (4%) Query: 46 MNITVLTARLQQIKAG-------GAGPHMALVPADMAGYAEGAMYSEIPEKFWSMSGLPD 98 +NI+++ ++IKA G P + + P+D G S IP+ + S P+ Sbjct: 39 INISLVQFDPEKIKAEILLGAQYGGLPDLVIFPSDFIGLHSLMKLSSIPKDWLS----PE 94 Query: 99 VDIRSSMQS--NGRQYGIPILKGNHLVLYYNPEIYPEAPASWXXXXXXXXXXXXKGIVPV 156 + ++ M + + + +G+P+++GN+L+LYYN ++ + +SW K I+P+ Sbjct: 95 LSQKAIMTAYVDDKYWGVPVIQGNNLLLYYNKKLVSQPVSSWHKIIDNKQKWIDKNILPI 154 Query: 157 AADLADPYCFIPFLTAFGGWPLKEGNPDLASFEMDAALRFVQRQIAHKVLGSFHGPTELL 216 + D Y FIPFL+AF GWP+ EG L + EM AL++ + K++ T Sbjct: 155 GWNYLDMYYFIPFLSAFNGWPIIEGEISLNTPEMIKALKYYRYLSEQKIVNPECNYTCSQ 214 Query: 217 DRFXXXXXXXXXXXXXXYNYLDLQMRDRLLVGPLPSINGNPAASMSSSIGLVFPQHSLES 276 F Y L M D L V LPS++GN MSS+ L P ++ + Sbjct: 215 SDFIQGKEAYAINGDWAYQDLKRAMGDALGVALLPSVDGNAMRPMSSTFVLSLPNYNSHA 274 Query: 277 EQADELL-SFAAYLLNESSQLEWAERVQRIPVHSRVLDNIKAAASPARAKLITCLENARN 335 L+ FA ++ S Q E +P ++++ + A+ L E ++ Sbjct: 275 TNKKALIKKFAKFIQRPSIQKLVYEETCLLPTSGKLMNRYQQQATGDEQILFKQFELSKP 334 Query: 336 MPIEPVMRNIWDAMAVGLQHLADEDAARIMRLMNEHV 372 MP M W AMA+G + D +A +H+ Sbjct: 335 MPSTIKMSIAWQAMAIGFKRYEDGLSAEKTAEFMQHI 371 >Q1ZSJ9.1 Q1ZSJ9_9VIBR Putative uncharacterized protein Length = 382 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 14/337 (4%) Query: 46 MNITVLTARLQQIKAG-------GAGPHMALVPADMAGYAEGAMYSEIPEKFWSMSGLPD 98 +NI+++ ++IKA G P + + P+D G S IP+ + S P+ Sbjct: 39 INISLVQFDPEKIKAEILLGAQYGGLPDLVIFPSDFIGLHSLMKLSSIPKGWLS----PE 94 Query: 99 VDIRSSMQS--NGRQYGIPILKGNHLVLYYNPEIYPEAPASWXXXXXXXXXXXXKGIVPV 156 + ++ M + + + +G+P+++GN+L+LYYN ++ + +SW K I+P+ Sbjct: 95 LSQKAMMTAYVDDKYWGVPVIQGNNLLLYYNKKLVSQPVSSWHDIIDTKQKWLDKNILPI 154 Query: 157 AADLADPYCFIPFLTAFGGWPLKEGNPDLASFEMDAALRFVQRQIAHKVLGSFHGPTELL 216 + D Y FIPFL+AF GWP+ +G L + EM AL++ + K++ T Sbjct: 155 GWNYLDMYYFIPFLSAFNGWPIIDGEISLNTPEMVKALKYYRYLSEQKIVNPECNYTCSQ 214 Query: 217 DRFXXXXXXXXXXXXXXYNYLDLQMRDRLLVGPLPSINGNPAASMSSSIGLVFPQHSLES 276 F Y L M D L V LP+++GN MSS+ L P ++ + Sbjct: 215 SDFIQGKEAYAINGDWAYQDLKKAMGDALGVALLPTVDGNVMHPMSSTFVLSLPNYNRHA 274 Query: 277 EQADELL-SFAAYLLNESSQLEWAERVQRIPVHSRVLDNIKAAASPARAKLITCLENARN 335 L+ FA ++ S Q + + +P ++L++ + A L E ++ Sbjct: 275 AHKKALIKKFAKFIQRSSVQKLVYKETRLLPTSGKLLNHYQQQAKGDEQILFKQFELSKP 334 Query: 336 MPIEPVMRNIWDAMAVGLQHLADEDAARIMRLMNEHV 372 MP M W AMA+G + D +A +H+ Sbjct: 335 MPSTIKMSIAWQAMAIGFKRYEDGLSAEKTAEFMQHI 371 >Q6LS77.1 Q6LS77_PHOPR Putative uncharacterized protein Length = 395 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 12/366 (3%) Query: 6 AQQLNIWHEFDGKGDTSIEVLEQLCRAYTSKSGVSVIPEVMNITVLTARLQQIKAGGAGP 65 A + IW+ S +E L + + ++G+ V + + A L G P Sbjct: 26 AADITIWY-----SHQSSRFVEGLVQRFEQETGIQVSLVQFKPSKIKAELLLGAQYGGVP 80 Query: 66 HMALVPADMAGYAEGAMYSEIPEKFWSMSGLPDVDIRSSMQSNGRQYGIPILKGNHLVLY 125 +ALVP+D G M E K W + L + D + + + +G+P+++GNHL+L+ Sbjct: 81 DLALVPSDFLGLYR-QMRLEPVLKQWLSTDLSE-DALKTAKVDDAYWGVPVIQGNHLMLF 138 Query: 126 YNPEIYPEAPASWXXXXXXXXXXXXKGIVPVAADLADPYCFIPFLTAFGGWPLKEGNPDL 185 YN + E ASW ++P+ + D Y F+PFL AF G PL L Sbjct: 139 YNKKFVEEPVASWQELIKTSQQYRDNNLMPIGWNYTDMYFFMPFLFAFNGQPLDGDMITL 198 Query: 186 ASFEMDAALRFVQRQIAHKVLGSFHGPTELLDRFXXXXXXXXXXXXXXYNYLDLQMRDRL 245 + EM AL + Q+ +V+ + R Y L +M D L Sbjct: 199 DTPEMVEALDYYQQLSIQQVVDNKCNYNCSQQRLIKGEEAYAINGDWAYQDLKDEMGDDL 258 Query: 246 LVGPLPSINGNPAASMSSSIGLVFP-QHSLESEQADELLSFAAYLLNESSQLEWAERVQR 304 V LP++N P SM S+ P + + SE+ + + +F ++ E +Q + Sbjct: 259 GVALLPTLNSKPMYSMKSTFVFTLPGKLTKNSERENRIAAFLTFVQREDNQKWVYQNYHL 318 Query: 305 IPVHSRVLDNIKAAASPARAKLITCLENARNMPIEPVMRNIWDAMAVGLQHLAD----ED 360 +PVH + + + A L+ L+ A+ M E M +W AM G Q D ++ Sbjct: 319 LPVHQALFQQVVSQAKGDELVLLQQLQFAKPMSSETNMAIVWAAMEKGYQRFKDGLSAKE 378 Query: 361 AARIMR 366 +AR M+ Sbjct: 379 SARYMQ 384 >Q1Z518.1 Q1Z518_PHOPR Putative uncharacterized protein Length = 386 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 157/372 (42%), Gaps = 13/372 (3%) Query: 6 AQQLNIWHEFDGKGDTSIEVLEQLCRAYTSKSGVSVIPEVMNITVLTARLQQIKAGGAGP 65 A + IW+ S +E L + + ++G+ V + + A L G P Sbjct: 17 AADITIWY-----SHQSSRFVEGLVQRFEQETGIQVSLVQFKPSKIKAELLLGAQYGGVP 71 Query: 66 HMALVPADMAGYAEGAMYSEIPEKFWSMSGLPDVDIRSSMQSNGRQYGIPILKGNHLVLY 125 +ALVP+D G + M E K W + L + D + + + +G+P+++GNHL+L+ Sbjct: 72 DLALVPSDFLGLYQ-QMRLEPVLKPWLSTDLSE-DALKTAKVDDAYWGVPVIQGNHLMLF 129 Query: 126 YNPEIYPEAPASWXXXXXXXXXXXXKGIVPVAADLADPYCFIPFLTAFGGWPLKEGNPDL 185 YN + E ASW ++P+ + D Y F+PFL AF G PL L Sbjct: 130 YNKKFVEEPVASWQELIKTSQQYRDDNLMPIGWNYTDMYFFMPFLFAFNGQPLDGDMITL 189 Query: 186 ASFEMDAALRFVQRQIAHKVLGSFHGPTELLDRFXXXXXXXXXXXXXXYNYLDLQMRDRL 245 + EM AL + Q+ +V+ R Y L +M D L Sbjct: 190 DTPEMVEALDYYQQLSVQQVVDKKCNYNCSQQRLIKGEEAYAINGDWAYQDLKDEMGDDL 249 Query: 246 LVGPLPSINGNPAASMSSSIGLVFP-QHSLESEQADELLSFAAYLLNESSQLEWAERVQR 304 V LP++N P SM S+ P + + SE+ + + +F ++ E +Q + Sbjct: 250 GVALLPTLNSKPMYSMKSTFVFTLPGKLTKNSERENRIAAFLTFVQREDNQKWVYQNYHL 309 Query: 305 IPVHSRVLDNIKAAASPARAKLITCLENARNMPIEPVMRNIWDAMAVGLQHL-----ADE 359 +PVH + + + A L+ L+ A+ M E M +W AM G Q A E Sbjct: 310 LPVHQALFQQVVSQAKGDELVLLQQLQFAKPMSSETNMAIVWAAMEKGYQRFRNGLSAKE 369 Query: 360 DAARIMRLMNEH 371 A + ++ N+ Sbjct: 370 SAQYMQKVANKQ 381 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,144,484,921 Number of extensions: 82258193 Number of successful extensions: 184221 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 184394 Number of HSP's successfully gapped: 35 Length of query: 381 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 244 Effective length of database: 1,770,017,148 Effective search space: 431884184112 Effective search space used: 431884184112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)