BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0012.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLK5.1 B1DLK5_9BACL YceI family protein 193 5e-48 B7DMR4.1 B7DMR4_9BACL YceI family protein 185 1e-45 C2BYN5.1 C2BYN5_LISGR YceI like family protein 185 1e-45 C1PC78.1 C1PC78_BACCO YceI family protein 179 1e-43 C1PQC2.1 C1PQC2_ALIAC Uncharacterized conserved protein 177 4e-43 >B1DLK5.1 B1DLK5_9BACL YceI family protein Length = 177 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 84/175 (48%), Positives = 124/175 (70%) Query: 1 VSNVNWEVDQDHSSVEFSVAHLMINRIKGVFGQFQANLSFDPNDLTTMGIQASIDANSIT 60 ++N W VD HSSV+F++ H+MI ++KG F +F+A + DP DLTT I ++D +SI Sbjct: 1 MANSKWAVDFTHSSVDFTIKHMMIAKVKGTFHKFEAEIDADPEDLTTAAISFTVDLSSID 60 Query: 61 TRQPQRDEHLRSGDFLDAAKYPTIVFQTTGCIPAGERQYELEGNLTLHGVTKPVTFHTVF 120 TR RD HLR+GDF D A++P + F++T + G+ +YE+ G+++LHGVT+ TF F Sbjct: 61 TRNADRDNHLRTGDFFDIAQFPELTFKSTNIVKNGDDEYEVTGDVSLHGVTRSETFSVTF 120 Query: 121 EGLNKDPRGRERAGFYSTASIKRNEFGLTFNSPLETGGMIVGNEVRIELYIEAVK 175 EG KDP G E+AGF SIKR+++GLT+N+ LETGG+++G+EV+I + IE K Sbjct: 121 EGAGKDPWGNEKAGFSGKGSIKRSDYGLTYNAALETGGVLIGDEVKISIEIEVGK 175 >B7DMR4.1 B7DMR4_9BACL YceI family protein Length = 177 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 116/177 (65%) Query: 1 VSNVNWEVDQDHSSVEFSVAHLMINRIKGVFGQFQANLSFDPNDLTTMGIQASIDANSIT 60 ++ V W VD HS++ FSV H+M ++G F +F A + DP DLTT I ++D SI Sbjct: 1 MAKVAWNVDPSHSTIGFSVKHMMFTTVRGHFKKFSATVVADPEDLTTAEIDFTVDVASID 60 Query: 61 TRQPQRDEHLRSGDFLDAAKYPTIVFQTTGCIPAGERQYELEGNLTLHGVTKPVTFHTVF 120 TR RD HLR DF D KYP + F+ T + G Y++ G+LT+ VTKPVTFH + Sbjct: 61 TRDENRDNHLRGADFFDVEKYPHMTFKATKIVKTGPNTYDMTGDLTIRDVTKPVTFHVTY 120 Query: 121 EGLNKDPRGRERAGFYSTASIKRNEFGLTFNSPLETGGMIVGNEVRIELYIEAVKIE 177 EG+ K+P G+E AGF + A I R +FGLT+N+ LETGG++V +EV+IEL IEA K + Sbjct: 121 EGMGKNPWGQEVAGFTAQAKINRKDFGLTWNAALETGGVLVSDEVKIELEIEATKAQ 177 >C2BYN5.1 C2BYN5_LISGR YceI like family protein Length = 186 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/174 (48%), Positives = 116/174 (66%), Gaps = 1/174 (0%) Query: 5 NWEVDQDHSSVEFSVAHLMINRIKGVFGQFQANLSFDPNDLTTMGIQASIDANSITTRQP 64 W+VD HSS+EF V H+M++++KG F F A++ DP DLT I +DA SI TRQ Sbjct: 13 KWQVDPAHSSIEFQVKHMMVSKVKGAFKDFSASVDMDPEDLTDAKIHFEVDAASIDTRQA 72 Query: 65 QRDEHLRSGDFLDAAKYPTIVFQTTGCIPAGERQYELEGNLTLHGVTKPVTFHTVFEGLN 124 RD+HL S DFL KYP I F++T G+ +Y++ G+LT+ GVTKP TFH FEG Sbjct: 73 DRDKHLISDDFLSTEKYPKITFESTSVSKKGDDEYDVTGDLTIRGVTKPATFHVTFEGSG 132 Query: 125 KDPR-GRERAGFYSTASIKRNEFGLTFNSPLETGGMIVGNEVRIELYIEAVKIE 177 KDP G+ AGF +T I R +F LT+N LETGG++VG+E++I + +EA + E Sbjct: 133 KDPMGGKTVAGFEATGKINRKDFDLTWNVALETGGVLVGDEIKINIQLEASQAE 186 >C1PC78.1 C1PC78_BACCO YceI family protein Length = 178 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 120/178 (67%), Gaps = 1/178 (0%) Query: 1 VSNVNWEVDQDHSSVEFSVAHLMINRIKGVFGQFQANLSFDPNDLTTMGIQASIDANSIT 60 ++ W VD HS+++F+V H+MI+++KG F +F+A + DP DLT + +DA+SI Sbjct: 1 MTKTKWAVDYAHSTIDFTVKHMMISKVKGSFQKFEAEIEADPQDLTDAKVSFIVDASSIH 60 Query: 61 TRQPQRDEHLRSGDFLDAAKYPTIVFQTTGCIPAGERQYELEGNLTLHGVTKPVTFHTVF 120 T+ RD HLRS DFLD +YP I F + AG+ Y + G+LT+HGVTK TF F Sbjct: 61 TKNDDRDNHLRSADFLDVEQYPNITFVSKSVTKAGDNDYNVTGDLTIHGVTKEETFKVTF 120 Query: 121 EGLNKDP-RGRERAGFYSTASIKRNEFGLTFNSPLETGGMIVGNEVRIELYIEAVKIE 177 EG++K+P G E AGF + ++KR+ +GLT+N+ LETGG++VG+E++ + +EA K E Sbjct: 121 EGISKNPMSGAETAGFSAEGTVKRSNYGLTWNAALETGGVLVGDEIKFTVELEASKAE 178 >C1PQC2.1 C1PQC2_ALIAC Uncharacterized conserved protein Length = 170 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 82/170 (48%), Positives = 112/170 (65%) Query: 8 VDQDHSSVEFSVAHLMINRIKGVFGQFQANLSFDPNDLTTMGIQASIDANSITTRQPQRD 67 +D HS++ FSV H+M ++G F +F A + DP DLTT I ++D SI TR RD Sbjct: 1 MDPSHSTIGFSVKHMMFTTVRGHFRKFSATVVADPEDLTTAEIDFTVDVASIDTRDENRD 60 Query: 68 EHLRSGDFLDAAKYPTIVFQTTGCIPAGERQYELEGNLTLHGVTKPVTFHTVFEGLNKDP 127 HLR DF D KYP + F+ T + G Y++ G+LT+ VTKPVTFH +EG+ K+P Sbjct: 61 NHLRGADFFDVEKYPHMTFKATKIVKTGPNTYDMTGDLTIRDVTKPVTFHVTYEGMGKNP 120 Query: 128 RGRERAGFYSTASIKRNEFGLTFNSPLETGGMIVGNEVRIELYIEAVKIE 177 G+E AGF + A I R +FGLT+N+ LETGG++V +EV+IEL IEA K + Sbjct: 121 WGQEVAGFTAQAKINRKDFGLTWNAALETGGVLVSDEVKIELEIEATKAQ 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,050,793,316 Number of extensions: 41625661 Number of successful extensions: 71366 Number of sequences better than 1.0e-05: 1000 Number of HSP's gapped: 70718 Number of HSP's successfully gapped: 1001 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)