BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0348.0008.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBS0.1 B3KBS0_9BACI Regulatory protein TetR                         187   3e-46
B1YHF1.1 B1YHF1_EXIS2 Transcriptional regulator, TetR family           53   7e-06

>B3KBS0.1 B3KBS0_9BACI Regulatory protein TetR
          Length = 201

 Score =  187 bits (474), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 97/109 (88%)

Query: 1   MQTILEHISHNTSFYYAMLIEENRIYQFRTKMENIIKDKLNEGWNPAAGNSPLAISKELL 60
           MQT+LEHIS N +FY++MLI+ENRIYQF+ KMENIIKDKL EGW PA GNSPLAISKELL
Sbjct: 93  MQTVLEHISLNLTFYHSMLIDENRIYQFQAKMENIIKDKLMEGWKPAQGNSPLAISKELL 152

Query: 61  LEYLVSSFMGIIIWWVKNDLPLPAGEVSSQFSRIVVYGHLKAAGITFEE 109
           +EYL +SFMGI+IWW+KND PLPA EVSSQFSRIV YGHL+AAGI  EE
Sbjct: 153 IEYLGASFMGIVIWWIKNDKPLPADEVSSQFSRIVAYGHLRAAGIAVEE 201


>B1YHF1.1 B1YHF1_EXIS2 Transcriptional regulator, TetR family
          Length = 202

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 7   HISHNTSFYYAMLIEENRIYQFRTKMENIIKDKLNEGWNPAAGNSPLAISKELLLEYLVS 66
           HI  +  FY  ML+    +  F ++  + +K+     +          + ++LLL Y++ 
Sbjct: 100 HIEQHEQFYRTMLLN-GPVKTFISRFLDTLKENYQRVFEAHTVTETQLVDRDLLLNYVIG 158

Query: 67  SFMGIIIWWVKNDLPLPAGEVSSQFSRIVVYGHLKAAG 104
             +G++I W++N  P  A  ++ Q SR++V+G +K+ G
Sbjct: 159 GQLGLLISWLRNGRPYSAAYMADQLSRMIVFGTVKSIG 196


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 644,435,331
Number of extensions: 24368045
Number of successful extensions: 67014
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 67156
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)