BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0007.p (259 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBR9.1 B3KBR9_9BACI Putative uncharacterized protein 444 e-123 A8FYF5.1 A8FYF5_SHESH Putative lipoprotein 266 1e-69 Q47V72.1 Q47V72_COLP3 Putative lipoprotein 261 4e-68 C4D734.1 C4D734_9SPHI Uncharacterized conserved protein 259 1e-67 A8FZD7.1 A8FZD7_SHESH Putative uncharacterized protein 247 6e-64 >B3KBR9.1 B3KBR9_9BACI Putative uncharacterized protein Length = 259 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/259 (81%), Positives = 229/259 (88%) Query: 1 MALNNQNELVLKATAVLESLASGDPGAITNYIHPDQYIQHNQALPDGRAAMLGAFDHLQE 60 M N+Q+ELV KA AVLES SG+P AIT Y+HPDQYIQHNQAL DGR +MLGA DHL+E Sbjct: 1 MTSNHQHELVRKAVAVLESFESGNPEAITAYVHPDQYIQHNQALLDGRESMLGALDHLKE 60 Query: 61 IGTKVSIKRTLADGDYVVLHSEYDFFGPKIGIDIFRFENGLIVEHWDNLQASVDKTPSGH 120 +GTKVSIKRTL DG+YV LHS Y F GPKI D+FRFENGLIVEHWDNLQ V+KTPS H Sbjct: 61 MGTKVSIKRTLVDGNYVALHSVYHFHGPKIVFDLFRFENGLIVEHWDNLQEMVEKTPSNH 120 Query: 121 TMIDGPATIKDIDKTDANKVYVKSYVENILFGKNPDLLASYFAGDHYIQHSPHIADGLSG 180 TMIDGP TIKDIDKTDANK +VKSYVENIL GKNPDLLASYF GDHYIQHSPHIADGLSG Sbjct: 121 TMIDGPVTIKDIDKTDANKAFVKSYVENILLGKNPDLLASYFDGDHYIQHSPHIADGLSG 180 Query: 181 VVAAMQGLKEKNIEFQYTHLHQVIGQGDFVLTVSEGLFDGQHTSFYDLFRVEDGKIAEHW 240 + A+Q LKE+NIEFQYTH+HQVIGQGDFVLT+SEGLFDGQHT+FYDLFRVEDGKIAEHW Sbjct: 181 LHTALQALKERNIEFQYTHVHQVIGQGDFVLTMSEGLFDGQHTAFYDLFRVEDGKIAEHW 240 Query: 241 DVIEATLPAEKRKNQNSRF 259 DVIEA LPAEKRKN NSRF Sbjct: 241 DVIEAILPAEKRKNSNSRF 259 >A8FYF5.1 A8FYF5_SHESH Putative lipoprotein Length = 287 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 129/260 (49%), Positives = 178/260 (68%), Gaps = 6/260 (2%) Query: 1 MALNNQNELVLKATAVLESLASGDPGAITNYIHPDQYIQHNQALPDGRAAMLGAFDHLQE 60 M L+N++ KA AVL S+ +GD AI+ YI+P +Y QHN ++ DG A L E Sbjct: 30 MTLSNKD----KAVAVLNSIETGDEQAIS-YINPLEYTQHNLSVGDGLAGFGAVLQALPE 84 Query: 61 IGTKVSIKRTLADGDYVVLHSEYDFFGPKIGIDIFRFENGLIVEHWDNLQASVD-KTPSG 119 +V + R DG++V H++Y+FFGPKIG D+FRFE+G+IVEHWDNL A+ D PSG Sbjct: 85 GSARVDVVRAFEDGEFVFTHTDYNFFGPKIGFDLFRFEDGVIVEHWDNLIATSDLPNPSG 144 Query: 120 HTMIDGPATIKDIDKTDANKVYVKSYVENILFGKNPDLLASYFAGDHYIQHSPHIADGLS 179 H+ IDG T+ D+DKT NK V +V+ IL D LA+YF GD+Y+QH+P I DG+S Sbjct: 145 HSQIDGSTTVTDLDKTAENKALVTDFVDTILVKGEFDKLANYFDGDNYLQHNPQIGDGVS 204 Query: 180 GVVAAMQGLKEKNIEFQYTHLHQVIGQGDFVLTVSEGLFDGQHTSFYDLFRVEDGKIAEH 239 G+ AA++ + ++ IE YT ++V+G+G+FVL++SEG G TSFYDLFR+E+GK+AEH Sbjct: 205 GLGAALEAMAQQGIEMIYTKNYKVLGEGNFVLSISEGTLGGAETSFYDLFRIENGKVAEH 264 Query: 240 WDVIEATLPAEKRKNQNSRF 259 WDVIE P + KN N +F Sbjct: 265 WDVIETIAPISEWKNNNGKF 284 >Q47V72.1 Q47V72_COLP3 Putative lipoprotein Length = 287 Score = 261 bits (667), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/249 (50%), Positives = 173/249 (69%), Gaps = 2/249 (0%) Query: 12 KATAVLESLASGDPGAITNYIHPDQYIQHNQALPDGRAAMLGAFDHLQEIGTKVSIKRTL 71 KA A+L S+ +GD AI+ Y++P +Y QHN A+ DG A L + KV++ R+ Sbjct: 37 KAVALLNSIETGDQTAIS-YVNPVKYTQHNLAVGDGLAGFGAVLQALPKNSAKVNVARSF 95 Query: 72 ADGDYVVLHSEYDFFGPKIGIDIFRFENGLIVEHWDNLQ-ASVDKTPSGHTMIDGPATIK 130 DG+YV H++Y+FFGPKIG D+FRFE+GLIVEHWDNL S PSG + IDGP T+ Sbjct: 96 TDGEYVFTHNDYNFFGPKIGFDLFRFEDGLIVEHWDNLDDKSATPNPSGRSQIDGPTTVD 155 Query: 131 DIDKTDANKVYVKSYVENILFGKNPDLLASYFAGDHYIQHSPHIADGLSGVVAAMQGLKE 190 D+DKTD NK V ++V++IL D L+++F GD Y QH+ IADGLSG+ A++ + + Sbjct: 156 DLDKTDENKTLVANFVDSILVKGQFDQLSAFFEGDFYHQHNTVIADGLSGLGQALEAMAK 215 Query: 191 KNIEFQYTHLHQVIGQGDFVLTVSEGLFDGQHTSFYDLFRVEDGKIAEHWDVIEATLPAE 250 I+ YT H+++G+G+FVL++SEG F + TSFYDLFRVE+GKI EHWDV+E +P E Sbjct: 216 NGIKMVYTKNHKILGEGNFVLSISEGSFADKPTSFYDLFRVENGKIVEHWDVMETIIPKE 275 Query: 251 KRKNQNSRF 259 + KN N +F Sbjct: 276 RWKNTNGKF 284 >C4D734.1 C4D734_9SPHI Uncharacterized conserved protein Length = 253 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/258 (49%), Positives = 169/258 (65%), Gaps = 6/258 (2%) Query: 3 LNNQNELVLKATAVLESLASGDPGAITNYIHPDQYIQHNQALPDGRAAMLGAFDHLQEIG 62 +N +++++ A+L+S+ +G+ G I+P QY QHN + DG A L Sbjct: 1 MNKKDQVI----ALLKSIETGEAGPAA-VINPSQYTQHNLGVADGLAGFGAVLQQLPPNS 55 Query: 63 TKVSIKRTLADGDYVVLHSEYDFFGPKIGIDIFRFENGLIVEHWDNLQAS-VDKTPSGHT 121 KV+ R DGDYV HS+YDFFGPKIG D+FRFE G IVEHWDNLQ + PSGHT Sbjct: 56 AKVNTVRVFEDGDYVFTHSDYDFFGPKIGFDVFRFEQGQIVEHWDNLQETPATANPSGHT 115 Query: 122 MIDGPATIKDIDKTDANKVYVKSYVENILFGKNPDLLASYFAGDHYIQHSPHIADGLSGV 181 MIDGP D+ +T+ NK V+S+V++IL + LA Y+ GDHYIQH+P I DGLSG+ Sbjct: 116 MIDGPTQATDLTQTEWNKALVESFVDDILVNGRMEKLAGYYNGDHYIQHNPQIGDGLSGL 175 Query: 182 VAAMQGLKEKNIEFQYTHLHQVIGQGDFVLTVSEGLFDGQHTSFYDLFRVEDGKIAEHWD 241 A++ + + I +Y +H+V+G+G+FVL +SEG F GQHTSF+DLFRVE+GKIAEHWD Sbjct: 176 GQALEAMAAQGITMKYDKIHRVLGEGNFVLVLSEGTFGGQHTSFFDLFRVENGKIAEHWD 235 Query: 242 VIEATLPAEKRKNQNSRF 259 IE KN N +F Sbjct: 236 TIETIPAPSDWKNDNGKF 253 >A8FZD7.1 A8FZD7_SHESH Putative uncharacterized protein Length = 288 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 122/250 (48%), Positives = 166/250 (66%), Gaps = 3/250 (1%) Query: 12 KATAVLESLASGDPGAITNYIHPDQYIQHNQALPDGRAAMLGAFDHLQEIGTKVSIKRTL 71 KA A+L S+ +GD GA+ Y++PD+Y QHN A+ DG A L + KV IKR Sbjct: 38 KAVALLNSIETGDRGAVA-YVNPDKYTQHNLAVADGLAGFGALLQALPKGSAKVDIKRAF 96 Query: 72 ADGDYVVLHSEYDFFGPKIGIDIFRFENGLIVEHWDNLQASVDKTPSGHTMIDGPATIKD 131 DGDYV H++Y+FFGPK+G D+FRFE+GLIVEHWDNL PSG T IDGP T+ D Sbjct: 97 QDGDYVFTHTDYNFFGPKVGFDLFRFEDGLIVEHWDNLAEKAAPNPSGRTQIDGPTTVID 156 Query: 132 IDKTDANKVYVKSYVENILFGKNPDLLASYF-AGD-HYIQHSPHIADGLSGVVAAMQGLK 189 DKT+ NK V +V+ IL + L + GD +Y+QH+ IADGL+G+ A++ + Sbjct: 157 SDKTEQNKALVADFVDTILVNGDFAQLGRFIDKGDANYLQHNTGIADGLNGLGKALEEMA 216 Query: 190 EKNIEFQYTHLHQVIGQGDFVLTVSEGLFDGQHTSFYDLFRVEDGKIAEHWDVIEATLPA 249 ++ I+ YT H V+G+G+FVL++SEG F G+H SFYDLFRVE+ K+ EHWD+IE Sbjct: 217 KQGIKMVYTKNHIVLGEGNFVLSISEGSFGGEHVSFYDLFRVENDKLVEHWDIIEPIPTK 276 Query: 250 EKRKNQNSRF 259 ++ KN N +F Sbjct: 277 DRWKNNNGKF 286 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,655,819,477 Number of extensions: 72400564 Number of successful extensions: 159891 Number of sequences better than 1.0e-05: 182 Number of HSP's gapped: 159375 Number of HSP's successfully gapped: 270 Length of query: 259 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 126 Effective length of database: 1,807,701,208 Effective search space: 227770352208 Effective search space used: 227770352208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)