BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0006.p (385 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1F047.1 C1F047_BACC3 Putative membrane protein 353 2e-95 C2TIG9.1 C2TIG9_BACCE Putative uncharacterized protein 348 4e-94 Q6HGY6.1 Q6HGY6_BACHK Putative uncharacterized protein 348 4e-94 C3FM13.1 C3FM13_BACTB Putative uncharacterized protein 347 1e-93 C3D3J5.1 C3D3J5_BACTU Putative uncharacterized protein 347 1e-93 >C1F047.1 C1F047_BACC3 Putative membrane protein Length = 393 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/361 (49%), Positives = 241/361 (66%), Gaps = 6/361 (1%) Query: 3 LLKSKLIVTLPVIVIAVIFIFSLAMIPSLNPAPRNLPIAIVNEDQGLATP---EVNTGGM 59 + K+KL++ PVI + V+FIFSL + P++ P P+NLPIAIVNEDQG+ P ++N G Sbjct: 1 MFKNKLLLLSPVIALLVVFIFSLTLFPTVQPQPKNLPIAIVNEDQGVEIPNQPKMNMGQT 60 Query: 60 IVSEIQSETWANPDGEPAVKWIEVGSEAEVKAGLDNQKYYAALVISKGFSEKQASLMTPD 119 IV ++ + + EPAVKW+EV ++ V+ GL+NQ+YYAALVISK FS KQASL TP Sbjct: 61 IVDNMKKTS--KLEEEPAVKWVEVKNKEAVQKGLNNQEYYAALVISKDFSTKQASLRTPQ 118 Query: 120 PSSPRVQIYINQGMNASASSMAGQMLNQAVHGMNEKLGAELLAAIGQQGGMLSTKQAAAL 179 PSSP V+I+INQGMNA+AS+MAGQMLN V MN + A+LL + +G L+T QAA L Sbjct: 119 PSSPEVEIFINQGMNAAASTMAGQMLNVIVDNMNNTVRAQLLDGVKAKGATLTTDQAARL 178 Query: 180 ASPIVSETINVNAKGTRNGNGNSPVLMLQPLWMASLIGNVVFLLVKNKQNYMNRKERVRA 239 +PI + NVN G + NG++P+ + QPLW+ASL + + +K +RKE Sbjct: 179 VTPITKKVTNVNEIGKNSANGSAPISLFQPLWIASLASAAIIFMAIHKIPVGSRKENFVL 238 Query: 240 NIIQIIWGTVIALAAGFSFTWFA-GSLGVHISHFTDTXXXXXXXXXXXXXXXXXVFAWIG 298 + QII G V A+ GF TW A G +G++IS+FTDT V + +G Sbjct: 239 KVKQIITGAVAAVVVGFGLTWIADGMVGLNISNFTDTALFLSITSFSFFLMISAVLSLVG 298 Query: 299 LKGMIIFVLLLFFGAPLLSFGPEFLSPFYRDWILSWLPMRYMVDGLRELLFFGQRLRMNH 358 LKG+ +F LLLFFGAPLLS PE LSPFY+DW+ SWLPMR+M++GLRE+ FFG+ L + Sbjct: 299 LKGIGVFALLLFFGAPLLSLAPEMLSPFYQDWVYSWLPMRFMIEGLREIFFFGKGLSWST 358 Query: 359 P 359 P Sbjct: 359 P 359 >C2TIG9.1 C2TIG9_BACCE Putative uncharacterized protein Length = 400 Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 178/362 (49%), Positives = 239/362 (66%), Gaps = 6/362 (1%) Query: 2 SLLKSKLIVTLPVIVIAVIFIFSLAMIPSLNPAPRNLPIAIVNEDQGLATP---EVNTGG 58 ++ K+KL++ PVI + V+FIFSL + P++ P P+NLPIAIVNEDQG+ P ++N G Sbjct: 7 NMFKNKLLLLSPVIALLVVFIFSLTLFPTVQPQPKNLPIAIVNEDQGVEIPNQSKMNMGQ 66 Query: 59 MIVSEIQSETWANPDGEPAVKWIEVGSEAEVKAGLDNQKYYAALVISKGFSEKQASLMTP 118 IV ++ + + EPAVKW+EV ++ V+ GL+NQ+YYAALVISK FS KQASL TP Sbjct: 67 TIVDNMKKTS--KLEEEPAVKWVEVKNKEAVQKGLNNQEYYAALVISKDFSTKQASLRTP 124 Query: 119 DPSSPRVQIYINQGMNASASSMAGQMLNQAVHGMNEKLGAELLAAIGQQGGMLSTKQAAA 178 PSSP V+I+INQGMNA+AS+MAGQMLN V MN + A+LL + +G L+T QAA Sbjct: 125 QPSSPEVEIFINQGMNAAASTMAGQMLNVIVDNMNNTVRAQLLDGVKAKGATLTTDQAAR 184 Query: 179 LASPIVSETINVNAKGTRNGNGNSPVLMLQPLWMASLIGNVVFLLVKNKQNYMNRKERVR 238 L +PI + NVN G + NGN+P+ + QPLW+ASL + + +K R E Sbjct: 185 LVTPITKKVTNVNEIGKNSANGNAPISLFQPLWIASLASAAIIFIAISKMPIRTRNENFV 244 Query: 239 ANIIQIIWGTVIALAAGFSFTWFA-GSLGVHISHFTDTXXXXXXXXXXXXXXXXXVFAWI 297 + QI+ G + AL GF TW A G +G++IS+FTDT V + + Sbjct: 245 LKLKQIVTGAIAALVIGFGLTWIADGMVGLNISNFTDTALFLSITSFSFFLMISAVLSLV 304 Query: 298 GLKGMIIFVLLLFFGAPLLSFGPEFLSPFYRDWILSWLPMRYMVDGLRELLFFGQRLRMN 357 GLKG+ +F LLLFFGAPLLS PE LSPFY+DW+ SWLPMR+M++GLRE+ FFG L + Sbjct: 305 GLKGIGLFALLLFFGAPLLSLAPEMLSPFYQDWVYSWLPMRFMIEGLREIFFFGNGLSWS 364 Query: 358 HP 359 P Sbjct: 365 TP 366 >Q6HGY6.1 Q6HGY6_BACHK Putative uncharacterized protein Length = 393 Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 178/361 (49%), Positives = 238/361 (65%), Gaps = 6/361 (1%) Query: 3 LLKSKLIVTLPVIVIAVIFIFSLAMIPSLNPAPRNLPIAIVNEDQGLATP---EVNTGGM 59 + K+KL++ PVI + V+FIFSL + P++ P P+NLPIAIVNEDQG+ P ++N G Sbjct: 1 MFKNKLLLLSPVIALLVVFIFSLTLFPTVQPQPKNLPIAIVNEDQGVEIPNQSKMNMGQT 60 Query: 60 IVSEIQSETWANPDGEPAVKWIEVGSEAEVKAGLDNQKYYAALVISKGFSEKQASLMTPD 119 IV ++ + + EPAVKW+EV ++ V+ GL+NQ+YYAALVISK FS KQASL TP Sbjct: 61 IVDNMKKTS--KLEEEPAVKWVEVKNKEAVQKGLNNQEYYAALVISKDFSTKQASLRTPQ 118 Query: 120 PSSPRVQIYINQGMNASASSMAGQMLNQAVHGMNEKLGAELLAAIGQQGGMLSTKQAAAL 179 PSSP V+I+INQGMNA+AS+MAGQMLN V MN + A+LL + +G L+T QAA L Sbjct: 119 PSSPEVEIFINQGMNAAASTMAGQMLNVIVDNMNNTVRAQLLDGVKAKGATLTTDQAARL 178 Query: 180 ASPIVSETINVNAKGTRNGNGNSPVLMLQPLWMASLIGNVVFLLVKNKQNYMNRKERVRA 239 +PI + NVN G + NGN+P+ + QPLW+ASL + + +K R E Sbjct: 179 VTPITKKVTNVNEIGKNSANGNAPISLFQPLWIASLASAAIIFIAISKMPIRTRNENFVL 238 Query: 240 NIIQIIWGTVIALAAGFSFTWFA-GSLGVHISHFTDTXXXXXXXXXXXXXXXXXVFAWIG 298 + QI+ G + AL GF TW A G +G++IS+FTDT V + +G Sbjct: 239 KLKQIVTGAIAALVIGFGLTWIADGMVGLNISNFTDTALFLSITSFSFFLMISAVLSLVG 298 Query: 299 LKGMIIFVLLLFFGAPLLSFGPEFLSPFYRDWILSWLPMRYMVDGLRELLFFGQRLRMNH 358 LKG+ +F LLLFFGAPLLS PE LSPFY+DW+ SWLPMR+M++GLRE+ FFG L + Sbjct: 299 LKGIGLFALLLFFGAPLLSLAPEMLSPFYQDWVYSWLPMRFMIEGLREIFFFGNGLSWST 358 Query: 359 P 359 P Sbjct: 359 P 359 >C3FM13.1 C3FM13_BACTB Putative uncharacterized protein Length = 393 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 173/361 (47%), Positives = 235/361 (65%), Gaps = 6/361 (1%) Query: 3 LLKSKLIVTLPVIVIAVIFIFSLAMIPSLNPAPRNLPIAIVNEDQGLATP---EVNTGGM 59 +LK+KL+ PVI + ++FIFSL + P++ P P+NLPIAIVNEDQG+ P ++N G Sbjct: 1 MLKNKLLFLSPVIALLIVFIFSLTLFPTVQPQPKNLPIAIVNEDQGVEIPNQSKMNMGQT 60 Query: 60 IVSEIQSETWANPDGEPAVKWIEVGSEAEVKAGLDNQKYYAALVISKGFSEKQASLMTPD 119 IV ++ + D EPAVKW+EV ++ V+ GL+N++YYAALVI K FS KQASL TP Sbjct: 61 IVDMVKKSS--KSDEEPAVKWVEVKNKEAVQKGLNNKEYYAALVIPKEFSAKQASLRTPQ 118 Query: 120 PSSPRVQIYINQGMNASASSMAGQMLNQAVHGMNEKLGAELLAAIGQQGGMLSTKQAAAL 179 PSSP ++IYINQGMN +AS+MAGQ+LN V MN + ++L + +G ++T QA L Sbjct: 119 PSSPEIEIYINQGMNTAASTMAGQILNGVVDNMNNTVRTQILEGLKAKGATVTTDQAEKL 178 Query: 180 ASPIVSETINVNAKGTRNGNGNSPVLMLQPLWMASLIGNVVFLLVKNKQNYMNRKERVRA 239 +PIV NVN G + NGNSP+ + QPLW+ASL + +K +RKE Sbjct: 179 VTPIVKNVKNVNEVGKNSANGNSPISLFQPLWIASLASAATIFIAISKMAVSSRKENFLL 238 Query: 240 NIIQIIWGTVIALAAGFSFTWFA-GSLGVHISHFTDTXXXXXXXXXXXXXXXXXVFAWIG 298 + QI+ G + L GF TW A G +G++IS+FTDT V + +G Sbjct: 239 KVNQIVTGAIATLVIGFGLTWIADGMVGLNISNFTDTALFLSITSFSFFLMISAVLSLVG 298 Query: 299 LKGMIIFVLLLFFGAPLLSFGPEFLSPFYRDWILSWLPMRYMVDGLRELLFFGQRLRMNH 358 LKG+ +F LLLFFGAPLLS PE LSPFY+DW+ SWLPM++M++GLRE+ FFG+ L N Sbjct: 299 LKGIGLFALLLFFGAPLLSLAPEMLSPFYQDWVYSWLPMKFMIEGLREIFFFGKGLSWNT 358 Query: 359 P 359 P Sbjct: 359 P 359 >C3D3J5.1 C3D3J5_BACTU Putative uncharacterized protein Length = 393 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 173/361 (47%), Positives = 235/361 (65%), Gaps = 6/361 (1%) Query: 3 LLKSKLIVTLPVIVIAVIFIFSLAMIPSLNPAPRNLPIAIVNEDQGLATP---EVNTGGM 59 +LK+KL+ PVI + ++FIFSL + P++ P P+NLPIAIVNEDQG+ P ++N G Sbjct: 1 MLKNKLLFLSPVIALLIVFIFSLTLFPTVQPQPKNLPIAIVNEDQGVEIPNQSKMNMGQT 60 Query: 60 IVSEIQSETWANPDGEPAVKWIEVGSEAEVKAGLDNQKYYAALVISKGFSEKQASLMTPD 119 IV ++ + D EPAVKW+EV ++ V+ GL+N++YYAALVI K FS KQASL TP Sbjct: 61 IVDMVKKSS--KSDEEPAVKWVEVKNKEAVQKGLNNKEYYAALVIPKEFSAKQASLRTPQ 118 Query: 120 PSSPRVQIYINQGMNASASSMAGQMLNQAVHGMNEKLGAELLAAIGQQGGMLSTKQAAAL 179 PSSP ++IYINQGMN +AS+MAGQ+LN V MN + ++L + +G ++T QA L Sbjct: 119 PSSPEIEIYINQGMNTAASTMAGQILNGVVDNMNNTVRTQILEGLKAKGATVTTDQAEKL 178 Query: 180 ASPIVSETINVNAKGTRNGNGNSPVLMLQPLWMASLIGNVVFLLVKNKQNYMNRKERVRA 239 +PIV NVN G + NGNSP+ + QPLW+ASL + +K +RKE Sbjct: 179 VTPIVKNVKNVNEVGKNSANGNSPISLFQPLWIASLASAATIFIAISKMAVSSRKENFLL 238 Query: 240 NIIQIIWGTVIALAAGFSFTWFA-GSLGVHISHFTDTXXXXXXXXXXXXXXXXXVFAWIG 298 + QI+ G + L GF TW A G +G++IS+FTDT V + +G Sbjct: 239 KVNQIVTGAIATLVIGFGLTWIADGMVGLNISNFTDTALFLSITSFSFFLMISAVLSLVG 298 Query: 299 LKGMIIFVLLLFFGAPLLSFGPEFLSPFYRDWILSWLPMRYMVDGLRELLFFGQRLRMNH 358 LKG+ +F LLLFFGAPLLS PE LSPFY+DW+ SWLPM++M++GLRE+ FFG+ L N Sbjct: 299 LKGIGLFALLLFFGAPLLSLAPEMLSPFYQDWVYSWLPMKFMIEGLREIFFFGKGLSWNT 358 Query: 359 P 359 P Sbjct: 359 P 359 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,073,416,161 Number of extensions: 83026046 Number of successful extensions: 243119 Number of sequences better than 1.0e-05: 271 Number of HSP's gapped: 243006 Number of HSP's successfully gapped: 287 Length of query: 385 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 248 Effective length of database: 1,770,017,148 Effective search space: 438964252704 Effective search space used: 438964252704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)