BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0348.0004.p
         (113 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJE9.1 B3KJE9_9BACI Putative uncharacterized protein                181   2e-44
B1DHG9.1 B1DHG9_9BACL Putative uncharacterized protein                143   4e-33
B3K7X2.1 B3K7X2_9BACI Putative uncharacterized protein                129   8e-29

>B3KJE9.1 B3KJE9_9BACI Putative uncharacterized protein
          Length = 112

 Score =  181 bits (458), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 96/112 (85%)

Query: 2   MNEEVSTFIQNLSQTWQIEVSNRLRQMVHQAIPEAEERIQYKKPHFLKNGHYAAVISPSK 61
           M+++V +FI+NLS  WQ EV  +LR M+H+AIPE EERIQYKKPHFLKNGHYAAVISPSK
Sbjct: 1   MSQDVISFIENLSLPWQAEVGKKLRLMIHEAIPEVEERIQYKKPHFLKNGHYAAVISPSK 60

Query: 62  DAIAFMIMNASGLTVPKGFEGPEERKWLKIRKDDTPDYDLLSNLLVQASSTL 113
           DAIAFMIMN + L VP  F+GP ERKWLKIRKDDTPDY+ LS LLVQASS+L
Sbjct: 61  DAIAFMIMNTTNLEVPSTFDGPPERKWLKIRKDDTPDYEQLSELLVQASSSL 112


>B1DHG9.1 B1DHG9_9BACL Putative uncharacterized protein
          Length = 114

 Score =  143 bits (361), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 1   MMNEEVSTFIQNLSQTWQIEVSNRLRQMVHQAIPEAEERIQYKKPHFLKNGHYAAVISPS 60
           M  EEV++FI+ L+Q WQIE+++ LR MVH+ +P AEERIQYKKPHFLKNG YAAVIS +
Sbjct: 1   MKQEEVTSFIEALAQPWQIELASSLRDMVHETMPGAEERIQYKKPHFLKNGKYAAVISTA 60

Query: 61  KDAIAFMIMNASGLTVPKG-FEGPEERKWLKIRKDDTPDYDLLSNLLVQASSTL 113
           KDA++F+I NA+ +  P+G F+GP ERK +K +     DYDLL+NLL QAS  L
Sbjct: 61  KDAVSFVIFNAAEVEFPEGQFDGPPERKTIKFKAGQAVDYDLLANLLKQASEPL 114


>B3K7X2.1 B3K7X2_9BACI Putative uncharacterized protein
          Length = 113

 Score =  129 bits (324), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 2   MNEEVSTFIQNLSQTWQIEVSNRLRQMVHQAIPEAEERIQYKKPHFLKNGHYAAVISPSK 61
           MN+EV+ ++  +S TW++EVS RLR++VH  IP+  ER+QYKKPHFLKNG YAAVIS +K
Sbjct: 1   MNQEVTDYMAAISDTWKVEVSERLRELVHNTIPDVAERLQYKKPHFLKNGKYAAVISVAK 60

Query: 62  DAIAFMIMNASGLTVPKG-FEGPEERKWLKIRKDDTPDYDLLSNLLVQASSTL 113
            A++F I NA GL  P+  FEGP ERK +KI      DY  L++LL QAS  L
Sbjct: 61  SAVSFTIFNAEGLEWPETLFEGPPERKTIKISAGQQVDYAALASLLKQASVGL 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 665,019,242
Number of extensions: 23968408
Number of successful extensions: 56953
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 56952
Number of HSP's successfully gapped: 3
Length of query: 113
Length of database: 3,060,696,203
Length adjustment: 80
Effective length of query: 33
Effective length of database: 2,307,015,003
Effective search space: 76131495099
Effective search space used: 76131495099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)