BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0348.0002.p (115 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFD1.1 B3KFD1_9BACI Beta-N-acetylhexosaminidase EC=3.2.1.52 127 3e-28 B1D857.1 B1D857_9BACL S-layer domain protein 115 9e-25 B1D8H3.1 B1D8H3_9BACL NEAr transporter 111 2e-23 B1DGS5.1 B1DGS5_9BACL S-layer domain protein 108 2e-22 B4B9S6.1 B4B9S6_CLOTM Ig domain protein group 2 domain protein 107 4e-22 >B3KFD1.1 B3KFD1_9BACI Beta-N-acetylhexosaminidase EC=3.2.1.52 Length = 1442 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 57/108 (52%), Positives = 81/108 (75%) Query: 4 IPLWARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDA 63 I WA+PY AQA+++G++SGYADGTFRP+ ++R+EL MIVR LG+K +L++ DA Sbjct: 1324 IQTWAKPYIAQALASGLISGYADGTFRPKVSISRAELAAMIVRGLGLKTAEGHELSYADA 1383 Query: 64 GDVPKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 +P WA PY+AAA + ++NG G N+FAP ATRAEAV +I+N+L+ Sbjct: 1384 DQIPAWAKPYVAAAQEARVMNGRGDNRFAPAASATRAEAVTVILNMLD 1431 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 1/104 (0%) Query: 7 WARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDAGDV 66 WA +AV G V+GY D TF+P + ++R E VM+V+AL ++ + L F DAG + Sbjct: 1266 WAEASIKRAVELGFVTGYTDKTFKPNKTVSRDEFVVMLVKALKLQ-GANSSLDFADAGSI 1324 Query: 67 PKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLL 110 WA PYIA A+ L++G F P +RAE A+IV L Sbjct: 1325 QTWAKPYIAQALASGLISGYADGTFRPKVSISRAELAAMIVRGL 1368 >B1D857.1 B1D857_9BACL S-layer domain protein Length = 336 Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 50/110 (45%), Positives = 70/110 (63%) Query: 2 DKIPLWARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFT 61 D IP WA+PY AV+ I+SGY DGTFRP ++TR E+ + +RAL + KL F Sbjct: 220 DNIPTWAKPYIETAVNQHIISGYTDGTFRPNNRITREEIAAIAIRALDMNTSNNTKLKFA 279 Query: 62 DAGDVPKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 D + +WA PY+A + + ++ G G N FAP ATRAEAV +I+N+L+ Sbjct: 280 DTKQIAEWAKPYVALSNELGIMQGRGNNNFAPKAAATRAEAVTVILNILK 329 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%) Query: 7 WARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDAGDV 66 WA QA+ G V+GY D TF+PE+++TR+E VM+ +ALG+ Q K TF D ++ Sbjct: 166 WAESAINQAMKLGFVNGYPDNTFKPEREVTRAEFVVMLAKALGLNGAEQ-KATFKD--NI 222 Query: 67 PKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 P WA PYI AV++ +++G F P+ TR E A+ + L+ Sbjct: 223 PTWAKPYIETAVNQHIISGYTDGTFRPNNRITREEIAAIAIRALD 267 >B1D8H3.1 B1D8H3_9BACL NEAr transporter Length = 1149 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/108 (47%), Positives = 78/108 (72%), Gaps = 1/108 (0%) Query: 4 IPLWARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDA 63 IP WA+ + A+AV+AG++ G+AD TFR ++L+R++L V+I RA +K+D +F+D+ Sbjct: 1037 IPNWAKSHIARAVAAGLMQGFADDTFRISEQLSRAQLAVIIARAANLKLDDNGSASFSDS 1096 Query: 64 GDVPKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 D+P WA+ +AAAVD L+ G N+FAP+ ATRAEAV +I+ LL+ Sbjct: 1097 KDIPAWASKEVAAAVDAGLIQGK-DNRFAPNETATRAEAVTMIIRLLD 1143 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 7 WARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDAGDV 66 WA+ AV GIV+G+ DG+FRP+ K++R E VMI RAL ++ + + F D + Sbjct: 979 WAKANIEAAVKLGIVNGFTDGSFRPDNKVSRGEFAVMISRALQLEGE-DTETVFQDGSTI 1037 Query: 67 PKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALI 106 P WA +IA AV L+ G + F +RA+ +I Sbjct: 1038 PNWAKSHIARAVAAGLMQGFADDTFRISEQLSRAQLAVII 1077 >B1DGS5.1 B1DGS5_9BACL S-layer domain protein Length = 343 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/105 (47%), Positives = 68/105 (64%) Query: 7 WARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDAGDV 66 WA+PY A A S G V+G+ DGTFRP Q +TR+E+TV+ R L + D + F DA + Sbjct: 235 WAKPYIATAASEGWVTGFNDGTFRPNQPITRTEMTVIATRVLKLTADGSVAIPFKDAETI 294 Query: 67 PKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 WA PYIAAAV ++ G G N+FAP +RAEAV LI+ +++ Sbjct: 295 QAWAKPYIAAAVQAGIIQGQGNNRFAPAASTSRAEAVTLILRMID 339 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Query: 6 LWARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRAL-GIKVDTQAKLTFTDAG 64 WA+ +A S GIV+GY DG+F+P +TR+E M+VRAL G Q++L F D G Sbjct: 171 FWAKSAIERAASMGIVTGYPDGSFKPNLAVTRAEFVAMLVRALKGNAGAIQSELNFADNG 230 Query: 65 DVPKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 + WA PYIA A + V G F P++ TR E + +L+ Sbjct: 231 SIGGWAKPYIATAASEGWVTGFNDGTFRPNQPITRTEMTVIATRVLK 277 >B4B9S6.1 B4B9S6_CLOTM Ig domain protein group 2 domain protein Length = 4626 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 65/110 (59%) Query: 2 DKIPLWARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFT 61 D +P WA+PY A A+ G+V GY DG+FRP +LTR E V+++RA GI+ L F Sbjct: 4513 DSVPAWAKPYVATAMHKGVVKGYEDGSFRPSNRLTRQETVVLVLRAFGIEEAQDKTLAFA 4572 Query: 62 DAGDVPKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIVNLLE 111 D+ +P W+ YI AV+ ++ G N F P R TRAE V +I ++ Sbjct: 4573 DSDKIPAWSRGYIKKAVELGIIKGYSDNTFGPQREITRAEVVTIISKCIQ 4622 Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 56/101 (55%) Query: 7 WARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIKVDTQAKLTFTDAGDV 66 WA + A + IV+GY D T RP +TR+E TVM+V+A G +V LT TD V Sbjct: 4456 WAAEFFADLLRREIVNGYPDRTLRPNAPITRAEATVMVVKAAGFEVSDSIPLTCTDKDSV 4515 Query: 67 PKWAAPYIAAAVDKSLVNGTGQNKFAPHRVATRAEAVALIV 107 P WA PY+A A+ K +V G F P TR E V L++ Sbjct: 4516 PAWAKPYVATAMHKGVVKGYEDGSFRPSNRLTRQETVVLVL 4556 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 36/50 (72%) Query: 2 DKIPLWARPYAAQAVSAGIVSGYADGTFRPEQKLTRSELTVMIVRALGIK 51 DKIP W+R Y +AV GI+ GY+D TF P++++TR+E+ +I + + +K Sbjct: 4575 DKIPAWSRGYIKKAVELGIIKGYSDNTFGPQREITRAEVVTIISKCIQLK 4624 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 656,766,606 Number of extensions: 22364150 Number of successful extensions: 57306 Number of sequences better than 1.0e-05: 1031 Number of HSP's gapped: 56600 Number of HSP's successfully gapped: 1378 Length of query: 115 Length of database: 3,060,696,203 Length adjustment: 82 Effective length of query: 33 Effective length of database: 2,288,172,973 Effective search space: 75509708109 Effective search space used: 75509708109 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)