BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0078.p (252 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WFZ8.1 Q5WFZ8_BACSK IclR family transcriptional regulator 202 2e-50 Q5WJ06.1 Q5WJ06_BACSK IclR family transcriptional regulator 194 9e-48 C0V0J5.1 C0V0J5_9BACT Transcriptional regulator, IclR family 143 1e-32 C1PWF3.1 C1PWF3_ALIAC Transcriptional regulator, IclR family 139 3e-31 B7DUG1.1 B7DUG1_9BACL Transcriptional regulator, IclR family 139 3e-31 >Q5WFZ8.1 Q5WFZ8_BACSK IclR family transcriptional regulator Length = 248 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 158/250 (63%), Gaps = 4/250 (1%) Query: 1 LDRKYWVPALERADLILTAISRKPGEYKMTDLCDATGINKSSMFSLLRTMEALNWVTKDE 60 +++KY VPAL+RA+ +LT + +P +K++DL GI+KS++ SLL TME L WV++D Sbjct: 1 MEQKYHVPALDRANAVLTVLRDEPYRWKLSDLSKMIGISKSTLHSLLATMERLQWVSRDR 60 Query: 61 KEAYALGAGVAYLNKVFNESHKQNYNLVEHFLKASAESIKAVGETFQLSVLDRSEIIYLA 120 E YA+G+ + F Q ++L E F + + ++ + E+ QL+VL+ S++ YLA Sbjct: 61 NETYAIGSAIGRFGSAFF----QQFDLSEDFRRLAEPVMRNLQESIQLAVLEGSDVQYLA 116 Query: 121 KLEGPSLVKLESSPGMRFPAHATAMGKMMLALLPPDELDRRYPDRILTPVTSHTLTDWSE 180 K+E PS V++ S PG+RFPAHAT +GK ++A + ++ YP+ L +T HT+ Sbjct: 117 KVEAPSPVQMVSGPGVRFPAHATGLGKALMADMNEQQICNLYPEESLPKITVHTIGSREA 176 Query: 181 FTATLAEIRSSGYSVDQEEIIQGICCVAAPVLDASGNAVAAVSTSMLRHAYLDKQEAAIQ 240 L +R +GY++D +E + G CC AAP+ A+G AA+S SM H + K+E A++ Sbjct: 177 LIHELKNVRKAGYAMDIQEGVMGFCCTAAPIRKANGEIAAAISCSMPIHHWEGKKERALE 236 Query: 241 EVILLGKKLS 250 E++ L ++LS Sbjct: 237 EIVQLAQRLS 246 >Q5WJ06.1 Q5WJ06_BACSK IclR family transcriptional regulator Length = 258 Score = 194 bits (492), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 156/251 (62%), Gaps = 4/251 (1%) Query: 1 LDRKYWVPALERADLILTAISRKPGEYKMTDLCDATGINKSSMFSLLRTMEALNWVTKDE 60 +++KYWVPA+ +AD IL I+ +P +Y++ DL + INKSS++SLL T+E L WV K + Sbjct: 1 MEKKYWVPAIGKADNILNLIAYRPHQYRLIDLSNELNINKSSLYSLLNTLETLGWVKKGK 60 Query: 61 KEAYALGAGVAYLNKVFNESHKQNYNLVEHFLKASAESIKAVGETFQLSVLDRSEIIYLA 120 + Y+LG VF+ + ++L+ F + + ++ + ET QLS+LD +I+YLA Sbjct: 61 DDTYSLGMRFG----VFSALYSSQFDLIGTFSEEAVSTVNNLDETIQLSILDGVDILYLA 116 Query: 121 KLEGPSLVKLESSPGMRFPAHATAMGKMMLALLPPDELDRRYPDRILTPVTSHTLTDWSE 180 K EG S V++ + PGM+FPAHATAMGK++L+ +E+ Y R L T +T+ E Sbjct: 117 KKEGSSPVRVATDPGMKFPAHATAMGKVLLSKYTFNEMKDLYEGRSLEAKTPYTIKTLEE 176 Query: 181 FTATLAEIRSSGYSVDQEEIIQGICCVAAPVLDASGNAVAAVSTSMLRHAYLDKQEAAIQ 240 A +A + GY + +E ++ C+AAPV + +AAVS +ML ++ KQE A + Sbjct: 177 LWAQIALLAEQGYIKEYQEAVENFFCIAAPVKNQEDEVIAAVSVTMLTTSWEKKQEEAER 236 Query: 241 EVILLGKKLSL 251 E++ L K++SL Sbjct: 237 EIVDLAKRISL 247 >C0V0J5.1 C0V0J5_9BACT Transcriptional regulator, IclR family Length = 275 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 19/224 (8%) Query: 29 MTDLCDATGINKSSMFSLLRTMEALNWVTKD-EKEAYALG-----AGVAYLNKVFNESHK 82 +T +C A I KSS +L+RT+ ++ + + Y LG G AY+ V Sbjct: 23 LTQICRALRIPKSSAHALIRTLLGRGYLAQGFQAGTYRLGPRTFEVGSAYMRSV------ 76 Query: 83 QNYNLVEHFLKASAESIKAVGETFQLSVLDRSEIIYLAKLEGPSLVKLESSPGMRFPAHA 142 +L+ + + + GET L+ LD ++IY+AK EG +L+++ S+ G RFPAH Sbjct: 77 ---DLIREGQEIIRQISRRCGETTHLATLDGQDVIYVAKEEGNNLIRMVSAVGKRFPAHG 133 Query: 143 TAMGKMMLALLPPDELDRRYP-DRILTPVTSHTLTDWSEFTATLAEIRSSGYSVDQEEII 201 TA+GKM+L+ L DEL RRYP R L +T +T+TD F L E R+ GY++D EE Sbjct: 134 TAVGKMLLSGLSRDELLRRYPRSRPLPKLTENTITDPEAFYRELEETRARGYALDHEEST 193 Query: 202 QGICCVAAPVLDASGNAVAAVSTSMLRHAYLDKQEAAIQEVILL 245 G+CCVAAPV DA G VAA+S S+ R ++ EA + E++ L Sbjct: 194 AGLCCVAAPVYDAGGRMVAAMSISVPR---VNFTEARLPELLRL 234 >C1PWF3.1 C1PWF3_ALIAC Transcriptional regulator, IclR family Length = 259 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 123/225 (54%), Gaps = 11/225 (4%) Query: 5 YWVPALERADLILTAISRKPGEYKMTDLCDATGINKSSMFSLLRTMEALNWVTKDEKEA- 63 Y V ++++A L+L +S P +T+L + G+ KS++ LL TM ++ +D Sbjct: 4 YTVKSVDKALLLLEVVSEHPDGIAITELAQSVGMYKSTVHRLLGTMMRRGYIEQDPVSGR 63 Query: 64 YALGAGVAYLNKVFNESHKQNYNLVEHFLKASAESIKAVGETFQLSVLDRSEIIYLAKLE 123 Y LG V L S +L + A E A GE L++LDR ++Y+ K+E Sbjct: 64 YKLGYTVLDLGMKLLSS----IDLRREAMPALQELALASGEVVHLALLDRGSVVYIEKVE 119 Query: 124 GPSLVKLESSPGMRFPAHATAMGKMMLALLPPDELD---RRYPDRILTPVTSHTLTDWSE 180 P+ +++ S G R P HAT +GK +LA LP E+ RRY LTP HT+TD Sbjct: 120 SPNTIRMHSRVGTRVPVHATGLGKAILAFLPKREVQDIVRRYGLPRLTP---HTITDADA 176 Query: 181 FTATLAEIRSSGYSVDQEEIIQGICCVAAPVLDASGNAVAAVSTS 225 F A+L E RS+G++ D EE +G+CCVAAP+ G +AAVS S Sbjct: 177 FWASLEETRSTGFAFDMEEHQEGVCCVAAPIFAHDGRVMAAVSVS 221 >B7DUG1.1 B7DUG1_9BACL Transcriptional regulator, IclR family Length = 259 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 123/225 (54%), Gaps = 11/225 (4%) Query: 5 YWVPALERADLILTAISRKPGEYKMTDLCDATGINKSSMFSLLRTMEALNWVTKDEKEA- 63 Y V ++++A L+L +S P +T+L + G+ KS++ LL TM ++ +D Sbjct: 4 YTVKSVDKALLLLEVVSEHPDGIAITELAQSVGMYKSTVHRLLGTMMRRGYIEQDPVSGR 63 Query: 64 YALGAGVAYLNKVFNESHKQNYNLVEHFLKASAESIKAVGETFQLSVLDRSEIIYLAKLE 123 Y LG V L S +L + A E A GE L++LDR ++Y+ K+E Sbjct: 64 YKLGYTVLDLGMKLLSS----IDLRREAMPALQELALASGEVVHLALLDRGSVVYIEKVE 119 Query: 124 GPSLVKLESSPGMRFPAHATAMGKMMLALLPPDELD---RRYPDRILTPVTSHTLTDWSE 180 P+ +++ S G R P HAT +GK +LA LP E+ RRY LTP HT+TD Sbjct: 120 SPNTIRMHSRVGTRVPVHATGLGKAILAFLPKREVQDIVRRYGLPRLTP---HTITDADA 176 Query: 181 FTATLAEIRSSGYSVDQEEIIQGICCVAAPVLDASGNAVAAVSTS 225 F A+L E RS+G++ D EE +G+CCVAAP+ G +AAVS S Sbjct: 177 FWASLEETRSTGFAFDMEEHQEGVCCVAAPIFAHDGRVMAAVSVS 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,364,762,608 Number of extensions: 50168844 Number of successful extensions: 144474 Number of sequences better than 1.0e-05: 2617 Number of HSP's gapped: 142653 Number of HSP's successfully gapped: 2619 Length of query: 252 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 120 Effective length of database: 1,817,122,223 Effective search space: 218054666760 Effective search space used: 218054666760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)