BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0071.p (265 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7YFU8.1 B7YFU8_9BACI Putative uncharacterized protein 309 2e-82 A4IP70.1 A4IP70_GEOTN NGG1-interacting factor 3 286 9e-76 B4BME9.1 B4BME9_9BACI Putative uncharacterized protein 286 9e-76 B3K9L0.1 B3K9L0_9BACI Putative uncharacterized protein 271 3e-71 B1D566.1 B1D566_9BACL Putative uncharacterized protein 261 3e-68 >B7YFU8.1 B7YFU8_9BACI Putative uncharacterized protein Length = 264 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 142/262 (54%), Positives = 194/262 (74%) Query: 4 LTFGQVISYLTAGTAGPEQTVDKLETGCPETPVRGVVTAFSASQAVIEQAIALGANLIIT 63 +T V+ LTA TVD L G V+G+ T+F + VI+QAI++GANL++T Sbjct: 3 ITVQDVLDRLTASVGKIPNTVDTLMYGDRNMEVKGIATSFMPTYRVIQQAISMGANLLVT 62 Query: 64 HEGVFYSHQKHGPELEQDPVYRQKAELIAGSDLGIYRFHDYLHRYTPDGIMDGLLRELGW 123 HEG+FYSH + +++DPVY+ K LI S + IYRFHDY HR+ PDGIM GL+R LGW Sbjct: 63 HEGLFYSHTDNTKMMQKDPVYQGKIRLIRESGIAIYRFHDYWHRHQPDGIMVGLIRALGW 122 Query: 124 QEYVAEHRPAVSILTLPEMKVEEIAEHLKRRLHIPCVRVAGNLSASCARVGILVGYRGGG 183 + YV+++ P +I+ +P M +E+AE++K RL +P VR++G+LSA CAR+G+LVGYRGGG Sbjct: 123 ESYVSKYLPTAAIVAIPRMTAKEVAEYVKERLRVPFVRISGDLSAPCARIGLLVGYRGGG 182 Query: 184 STAIPLYDQDSLDVIIAGEGPEWETPEYIRDAARQGRNKALIMLGHAESEAPGMKHLAGL 243 + +IPL++Q++LD II GEGPEWETPEYIRDA QGR KALI+LGHAESE PGM+HLA Sbjct: 183 ALSIPLFEQENLDAIIYGEGPEWETPEYIRDAVYQGRQKALIVLGHAESEEPGMRHLAEW 242 Query: 244 LSAQFPGVPVHFIADPPVFRVL 265 L +QF +PV+FI + +F+V+ Sbjct: 243 LGSQFLDIPVYFIPETTIFQVI 264 >A4IP70.1 A4IP70_GEOTN NGG1-interacting factor 3 Length = 264 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 132/262 (50%), Positives = 181/262 (69%) Query: 4 LTFGQVISYLTAGTAGPEQTVDKLETGCPETPVRGVVTAFSASQAVIEQAIALGANLIIT 63 +T V+ LTA TVD L+ G V+G+ +F + VIEQA+ GANL+I+ Sbjct: 3 ITVQTVMERLTACVETRSPTVDTLKYGDSSMEVKGIAVSFMPTYRVIEQAVQAGANLLIS 62 Query: 64 HEGVFYSHQKHGPELEQDPVYRQKAELIAGSDLGIYRFHDYLHRYTPDGIMDGLLRELGW 123 HEG+FYSH ++ DPVY++K LI S + IYRFHD HRY PDGIM GL+R LGW Sbjct: 63 HEGLFYSHAGDAETMKNDPVYQEKVRLICESGIAIYRFHDQWHRYQPDGIMVGLVRALGW 122 Query: 124 QEYVAEHRPAVSILTLPEMKVEEIAEHLKRRLHIPCVRVAGNLSASCARVGILVGYRGGG 183 + YV+E++ A +I+T+P + ++ +++K RL I +RVAG+LS C R+G+L GYRG G Sbjct: 123 ESYVSEYQSAATIVTIPRILARDMVKYVKERLGISFIRVAGDLSTICTRIGLLAGYRGHG 182 Query: 184 STAIPLYDQDSLDVIIAGEGPEWETPEYIRDAARQGRNKALIMLGHAESEAPGMKHLAGL 243 S IPL++++ LD II GEGPEWETPEY+RDA QG+ K L++LGHAESE PGM++LA Sbjct: 183 SLTIPLFEKEKLDAIIYGEGPEWETPEYVRDAVHQGKRKVLVVLGHAESEEPGMRYLAQK 242 Query: 244 LSAQFPGVPVHFIADPPVFRVL 265 L FP +PVHFI++ P+F + Sbjct: 243 LREMFPTIPVHFISEKPLFHFM 264 >B4BME9.1 B4BME9_9BACI Putative uncharacterized protein Length = 264 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 132/262 (50%), Positives = 181/262 (69%) Query: 4 LTFGQVISYLTAGTAGPEQTVDKLETGCPETPVRGVVTAFSASQAVIEQAIALGANLIIT 63 +T V+ LTA TVD L+ G V+G+ +F + VIEQA+ GANL+I+ Sbjct: 3 ITVQTVMERLTACVETRSPTVDTLKYGDSSMEVKGIAVSFMPTYRVIEQAVQAGANLLIS 62 Query: 64 HEGVFYSHQKHGPELEQDPVYRQKAELIAGSDLGIYRFHDYLHRYTPDGIMDGLLRELGW 123 HEG+FYSH ++ DPVY++K LI S + IYRFHD HRY PDGIM GL+R LGW Sbjct: 63 HEGLFYSHAGDAETMKNDPVYQEKVRLICESGIAIYRFHDQWHRYQPDGIMVGLVRALGW 122 Query: 124 QEYVAEHRPAVSILTLPEMKVEEIAEHLKRRLHIPCVRVAGNLSASCARVGILVGYRGGG 183 + YV+E++ A +I+T+P + ++ +++K RL I +RVAG+LS C R+G+L GYRG G Sbjct: 123 ESYVSEYQSAATIVTIPRILARDMVKYVKERLGISFIRVAGDLSTICTRIGLLAGYRGHG 182 Query: 184 STAIPLYDQDSLDVIIAGEGPEWETPEYIRDAARQGRNKALIMLGHAESEAPGMKHLAGL 243 S IPL++++ LD II GEGPEWETPEY+RDA QG+ K L++LGHAESE PGM++LA Sbjct: 183 SLTIPLFEKEKLDAIIYGEGPEWETPEYVRDAVHQGKRKVLVVLGHAESEEPGMRYLAQK 242 Query: 244 LSAQFPGVPVHFIADPPVFRVL 265 L FP +PVHFI++ P+F + Sbjct: 243 LREMFPTIPVHFISEKPLFHFM 264 >B3K9L0.1 B3K9L0_9BACI Putative uncharacterized protein Length = 266 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 134/264 (50%), Positives = 185/264 (70%), Gaps = 2/264 (0%) Query: 4 LTFGQVISYLTAGTAGPEQTVDKLETGCPETPVRGVVTAFSASQAVIEQAIALGANLIIT 63 +T +I+ LT E VD++ G E V G+ F+AS +V+++A+ +GANL+IT Sbjct: 3 VTVQDIINRLTEPAGFLESKVDRVTAGSAEAVVHGIAVTFAASYSVLQRAVEVGANLVIT 62 Query: 64 HEGVFYSHQKHGPE-LEQDPVYRQKAELIAGSDLGIYRFHDYLHRYTPDGIMDGLLRELG 122 HEG FYSHQ+ G E +E PV++ K L+ DL IYRFHD HRY PD + GL++ L Sbjct: 63 HEGAFYSHQEEGYEGVEASPVFQDKLRLMESGDLTIYRFHDAPHRYVPDIMTQGLVQALD 122 Query: 123 WQEYVAEHRPAVSILTLPE-MKVEEIAEHLKRRLHIPCVRVAGNLSASCARVGILVGYRG 181 W+ YV +H A +I+TLPE M + +IAEH+KR+L++P +R GN S+ C+R+GI VGYRG Sbjct: 123 WEVYVDKHLKAAAIVTLPEEMSLPDIAEHVKRKLNLPYLRYVGNRSSICSRIGITVGYRG 182 Query: 182 GGSTAIPLYDQDSLDVIIAGEGPEWETPEYIRDAARQGRNKALIMLGHAESEAPGMKHLA 241 GG+ AIPL ++SLD++IAGEGPEWETPEY+ DAA QGR +L++LGHA SE PGM +A Sbjct: 183 GGAHAIPLCLKESLDLLIAGEGPEWETPEYMGDAAAQGRGPSLLLLGHAASEEPGMACVA 242 Query: 242 GLLSAQFPGVPVHFIADPPVFRVL 265 L FPG+P+H+I P+ RV+ Sbjct: 243 DRLREFFPGIPIHYIPSGPLIRVI 266 >B1D566.1 B1D566_9BACL Putative uncharacterized protein Length = 264 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 128/262 (48%), Positives = 174/262 (66%) Query: 4 LTFGQVISYLTAGTAGPEQTVDKLETGCPETPVRGVVTAFSASQAVIEQAIALGANLIIT 63 +T +I L + TVD L G P+T V G+ +F +Q VIE+A+A GAN +IT Sbjct: 3 ITVQTIIDALRSSVPPIPDTVDVLMAGHPDTEVTGMAVSFMPTQQVIEKALAAGANFLIT 62 Query: 64 HEGVFYSHQKHGPELEQDPVYRQKAELIAGSDLGIYRFHDYLHRYTPDGIMDGLLRELGW 123 HE + Y+H+ + DPV+ QK +LI S + I+R+HDY HR PD IM GLL L W Sbjct: 63 HEPLSYNHRHEEQLIGNDPVFAQKLKLIEESGIAIFRYHDYCHRKQPDIIMTGLLSALEW 122 Query: 124 QEYVAEHRPAVSILTLPEMKVEEIAEHLKRRLHIPCVRVAGNLSASCARVGILVGYRGGG 183 + +AE P ++L LP M V E+A H+K++L +P +R+ G+LS +R GILVGYRGG Sbjct: 123 ESRLAEMLPIAALLELPSMTVAEVAAHVKQKLGMPFLRITGDLSTPISRAGILVGYRGGA 182 Query: 184 STAIPLYDQDSLDVIIAGEGPEWETPEYIRDAARQGRNKALIMLGHAESEAPGMKHLAGL 243 STAIP +LD++I GEGPEWETPEYIRDA+ QGR+KAL+ LGHAESE PGM+ L+ Sbjct: 183 STAIPFMRDFNLDLLIVGEGPEWETPEYIRDASYQGRSKALLTLGHAESEEPGMRALSDE 242 Query: 244 LSAQFPGVPVHFIADPPVFRVL 265 L ++P +PV F P+FR++ Sbjct: 243 LKLRYPEIPVEFFPIQPIFRIV 264 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,697,969,675 Number of extensions: 72388190 Number of successful extensions: 173768 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 173961 Number of HSP's successfully gapped: 49 Length of query: 265 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 132 Effective length of database: 1,807,701,208 Effective search space: 238616559456 Effective search space used: 238616559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)