BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0070.p (765 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7I4.1 B1D7I4_9BACL Transcriptional regulator, AraC family 358 2e-96 B3KJV7.1 B3KJV7_9BACI Helix-turn-helix-domain containing protein... 297 3e-78 B1DGQ4.1 B1DGQ4_9BACL Transcriptional regulator, AraC family 275 1e-71 B3KHE9.1 B3KHE9_9BACI Helix-turn-helix-domain containing protein... 267 2e-69 B3K6G9.1 B3K6G9_9BACI Helix-turn-helix-domain containing protein... 229 1e-57 >B1D7I4.1 B1D7I4_9BACL Transcriptional regulator, AraC family Length = 787 Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 228/785 (29%), Positives = 409/785 (52%), Gaps = 42/785 (5%) Query: 13 QSVAFKWIVSYAVIMLIPLVVSAIIYLQTKQIVEYEIERAGHAMLKQMQNTVDSEINQAE 72 +S+ W++SY ++ +P+++S I+Y Q+ + EI RA ++LKQ+ T+D++++Q + Sbjct: 11 KSIIVTWLISYCAVLFVPILISLIVYSQSSAALRSEIHRANDSLLKQVGYTIDNQVDQMK 70 Query: 73 KLAMQLSIHNDVNKYLNLTPGEEGTQAFEIYKTRQELSKYKSTNDFVSGIYLYSSLLDKV 132 +L M+L+ + + + + E Q F+ Y+ +E Y+++ + Y+ V Sbjct: 71 RLTMELTWNARLQTLMYSSRTEADAQ-FDAYQLVKEFQTYQTSYASIDEFYVTWEREHAV 129 Query: 133 LTDETYTDSKTFYEINRQMIGLSYEDWLSALKGDAGKGKDALPLIEFKRWGTNVVLMKPF 192 L D KT + +SYEDWL+A++ LPL++ +++ + Sbjct: 130 LRSGNVRDMKTAFATLHDTGRMSYEDWLAAVETSEHNQFTLLPLMDAGATQSSIAYITHL 189 Query: 193 -SNAGGEHTLRGALILPLNGSKIQNMLKNVDWVNNGDVYIVDRNHQVLFQNNSMAGLESV 251 + G G +++ + ++ QN +K++ + G V I++RN++VL N E V Sbjct: 190 PKDLNGRQA--GTVVVMSDLARFQNAIKSISGFSGGYVLILNRNNEVLLSNLPKKQGEEV 247 Query: 252 PW--AEEGGKGAGTSFIDIAGTENMVSFIASDTTDWKYISVFPSSIFWEKAREIRXXXXX 309 GG+ TS + ++ + ++ S +D KY V PSSI+W+KA +R Sbjct: 248 ILQKVRSGGEEMPTS---MKSGDSEIFYLQSSVSDLKYALVIPSSIYWQKAEYVRKLTLV 304 Query: 310 XXXXXXXXXXXVISYFARKNYNPVRELVNLFSGAKDEQSRRVLDEFAFIRESALATIRER 369 + +F R+NY+P+++LV + +E+ +E FI+ + T E+ Sbjct: 305 SVLISVMGAGVLTWFFMRRNYSPIQKLVESLTDKNNEEEHTEWNELNFIQRAVSRTRSEK 364 Query: 370 DDINSRQFRQLRVLQTYYLSRLLRGQIEDGLTVGEAARLHHFEWESEDFAVLLFYIQGSS 429 D+I + VL++ LSRLL+G+++ + EA + + E S+D+AV+LF I+ Sbjct: 365 DNIAMQLQMHHNVLRSNMLSRLLKGRLDSPIPYEEAFKTYRMEQISDDYAVILFVIENDE 424 Query: 430 ---------EGGPSPSLANFIVSNILKDFTGGH-HGLSFTEMDGMLAAVVNIRAGRAD-- 477 + FI+SN++++ G + H EMD M+ +VN+ G D Sbjct: 425 SLYEKLPGIDDNERRRFLQFIISNVVEELAGRYDHAGYVAEMDDMMVCLVNLSCGSGDEE 484 Query: 478 SWKEDMEEALAQTMEFIAHKYRLQIVMAGSERHTGLNSLHQGYLQALEAQEYRLVLEENG 537 +K+D+ E + F+ +Y + + +A S +H+ L + Y +A++A EY++VL + G Sbjct: 485 QYKKDLHEIATEAQRFL-KRYDMDLTVAISGKHSALPGIAAAYSEAVDAMEYKMVLGKKG 543 Query: 538 PVWYGEIQPQPTD-----YYLSLNDEVVFINLIKSGELEKASGMVDDILAR-FFGSQVSV 591 + Y +I+ P+D YY L E INLIKSG+ E+AS +++I R F +++ Sbjct: 544 IIAYDDIRKTPSDAVQFGYYYPLQAEQQLINLIKSGDFEQASAFMNEITERNFRQPMMNL 603 Query: 592 ELVRYAMIDMTSSIMKAVPQ--ETQRSKLWEEWRPMKRLLVCTTRGEFRQELMELTAMAC 649 L + M ++ +++KA+ + + + S L + M ++ C T E RQEL L C Sbjct: 604 TLAKCFMFNLVGTMVKAINELGDGKGSVLNDNPNWMNSIMACDTVQEMRQELHALLRDVC 663 Query: 650 GMANEKLTLISNT---------GIGEEVSAYVKDNYADINLSVSMIGAHFGITPQYVSKL 700 A+ +L SN + V+ Y+ +NY D N++V+ IG HF + Y+SKL Sbjct: 664 AFASTRLE--SNMTHERAESIRDLSARVAGYIGENYGDSNMNVNTIGEHFDLKGSYLSKL 721 Query: 701 FKEQTGQGLHDYISQVRTEAAKAYLQE-GITIEEISARVGFSSSSAFIRVFKKYEGITPG 759 FK QTG+GL DY+ + R AK + E ++ E+S VG++ ++ FIRVFKKYEGITPG Sbjct: 722 FKTQTGEGLLDYLHKYRIAEAKRRMTELQESVNEVSKAVGYNDAATFIRVFKKYEGITPG 781 Query: 760 RFKNL 764 ++K + Sbjct: 782 KYKEM 786 >B3KJV7.1 B3KJV7_9BACI Helix-turn-helix-domain containing protein AraC type Length = 789 Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 205/782 (26%), Positives = 379/782 (48%), Gaps = 61/782 (7%) Query: 20 IVSYAVIMLIPLVVSAIIYLQTKQIVEYEIERAGHAMLKQMQNTVDSEINQAEKLAMQLS 79 IVSY +I+L+P+ V +Y + + ++E ER+ AML+Q++ ++DS++ + + LA Q+ Sbjct: 24 IVSYMLILLLPMTVGLFLYGRVENVMENNAERSNSAMLEQLRLSMDSKLKEVDILAKQIM 83 Query: 80 IHNDVNKYLNLTPGEEGTQAFEIYKTRQELSKYKS-TNDFVSGIYLYSSLLDKVLTDETY 138 + + LNL ++G ++ R L++Y+S + FV Y++ D +L Sbjct: 84 FNPKLAYLLNLDRHDQGGAYRQVEFLRDYLNRYQSFVSGFVKDYYVHLQAGDVILKPGLR 143 Query: 139 TDSKTFYEINRQMIGLSYEDWLSALKGDAGKGKDALPLIEFKRWGTNVVLMKPFSNAGGE 198 TD++TFY+ + + +E W + G + K LP ++V+L P G Sbjct: 144 TDARTFYDKYYRFEHMDFETWKQTMLG-SYHNKAFLP--------SDVLLQNPNQGNGNP 194 Query: 199 ---------------HTLRGALILPLNGSKIQNMLKNVDWVNNGDVYIVDRNHQVLFQNN 243 +RG L++ ++G ++Q M + ++ N+ ++YI+D+ V+ ++ Sbjct: 195 ADVITYAQSLPLHDVSNIRGTLVIMIDGQQLQEMFRQIESANDSEIYILDKERGVIASSS 254 Query: 244 SMAGLESVPWAEEGGKGAGTSFIDIAGTENMVSFIASDTTDWKYISVFPSSIFWEKAREI 303 V G G + ++ GT++MV+F S W Y+SV P E+ ++ Sbjct: 255 DSELSAQVTERLTGPSGLFKTALN--GTDSMVTFTESKEAGWHYVSVMPMDSVMERVAQL 312 Query: 304 RXXXXXXXXXXXXXXXXVISYFARKNYNPVRELVNLFSGAKDEQSRRVLDEFAFIRESAL 363 + V +FA + Y+PV+ +V+ K Q + +E+ FI ++ Sbjct: 313 KRMALTVFVASLVAGAAVACWFAYRQYSPVKRVVDAILQGKPIQDKPAANEYDFILQTIE 372 Query: 364 ATIRERDDINSRQFRQLRVLQTYYLSRLLRGQIED---GLTVGEAARLHHFEWESEDFAV 420 ++ E+ + R FRQ V++ +LSRL+RG I+ G G + S+ FAV Sbjct: 373 GSLVEQRHLRERLFRQTPVIRADFLSRLIRGYIDPDHAGDQGGPTLATMGIHFASDKFAV 432 Query: 421 LLFYIQGSSEGGPSPS-----LANFIVSNILKDFT-GGHHGLSFTEMDGMLAAVVN---I 471 ++ + P PS FI+SNI D GH G + +A +VN + Sbjct: 433 IIVQAVDITRLSPEPSEQGWTQIRFIISNIGTDIANSGHQGFAVDMERDRVAILVNFHPV 492 Query: 472 RAGRADSWKEDMEEALAQTMEFIAHKYRLQIVMAGSERHTGLNSLHQGYLQALEAQEYRL 531 A + ++ E L + +E ++ + + +A S HTG ++ YL+A+ A +YR+ Sbjct: 493 EEAEAQLFLHEIAERLLRVLE---DRFHISVTIAVSSVHTGNGTIGSAYLEAMAALDYRM 549 Query: 532 VLEENGPVWYGEIQPQPTDYYLSLNDEVVFINLIKSGELEKASGMVDDILARFFGSQ-VS 590 N + +G ++ YY + E +N ++SG+ E + ++D+I F S ++ Sbjct: 550 FSGRNSIIHFGHVRDIKHHYYYPIEFETQLVNHVRSGDTENVAKLLDNIYTMNFKSAGMT 609 Query: 591 VELVRYAMIDMTSSIMKA--VPQETQRSKLWEEWRPMKRLLVCTTRGEFRQELMELTAMA 648 EL R ++ S+ +K + S L + P+K + C+T E + E L Sbjct: 610 PELGRCLFFNIISTFLKILNLTNTDHESLLGPSFDPVKHIFGCSTSDEMQAETKRLY--- 666 Query: 649 CGMANEKLTLISNT-------GIGEEVSAYVKDNYADINLSVSMIGAHFGITPQYVSKLF 701 +KLT + +T + +++ A++ N D NL + MI HFG+TPQY+S F Sbjct: 667 -----DKLTCLFHTEHSDHSIQLQQDMMAFIDRNLTDYNLGLGMIADHFGMTPQYISSFF 721 Query: 702 KEQTGQGLHDYISQVRTEAAKAYLQEG-ITIEEISARVGFSSSSAFIRVFKKYEGITPGR 760 K+ + DYI++ R E AK +++ +T +++ VG+++ FIR FKK EG+TPG+ Sbjct: 722 KKMNRCNITDYITRARIEKAKTLMEQSELTNAQLAQLVGYTNDVVFIRAFKKLEGVTPGK 781 Query: 761 FK 762 ++ Sbjct: 782 YR 783 >B1DGQ4.1 B1DGQ4_9BACL Transcriptional regulator, AraC family Length = 796 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 206/790 (26%), Positives = 387/790 (48%), Gaps = 47/790 (5%) Query: 6 HKKLMFSQSVAFK-WIVSYAVIMLIPLVVSAIIYLQTKQIVEYEIERAGHAMLKQMQNTV 64 HK+L ++S A + I+S I+LIPL + +Y + + +E R+ AML+Q++ T+ Sbjct: 9 HKRLFRNRSHALQTMIISNLFILLIPLAMGVFLYAKVENSLEKSTNRSNEAMLEQLRLTL 68 Query: 65 DSEINQAEKLAMQLSIHNDVNKYLNLTPGEEGTQAFEIYK-TRQELSKYKS-TNDFVSGI 122 D+++++ + LA Q+ ++ L + ++ + R +L++Y++ T+ F+ Sbjct: 69 DNKLSEVDLLARQVVFDPKLDYMLKIQGHPSSADRYQFVEFMRDKLARYRNMTSSFIFDY 128 Query: 123 YLYSSLLDKVLTDETYTDSKTFYEINRQMIGLSYEDWLSALKGDAGKG---------KDA 173 ++Y S D ++ + TDS TFYE N SYE W + + + + Sbjct: 129 FVYFSRSDTIIKSDQLTDSHTFYETNYTFKDQSYEQWKTGMLESTHQSAYLPVTPLSRGL 188 Query: 174 LPLIEFKRWGTNVVLMKPFSNAGGEHTLRGALILPLNGSKIQNMLKNVDWVNNGDVYIVD 233 PL + +V++ + G I+ ++ ++I+ M ++ +N D+YI+D Sbjct: 189 NPLASLEVIPGDVIVYEQTLPVSSPSDRMGNFIVLIDVNEIKAMFAQLESASNSDIYIID 248 Query: 234 RNHQV-------LFQNNSMAGLE--SVPWAEEGGKGAGTSFIDIAGTENMVSFIASDTTD 284 N Q LF + + ++ +VP+A + G G + MVSF++S Sbjct: 249 NNGQTIMSTGSALFPADLLKRMDQTNVPFAYKMG-----------GVDQMVSFVSSQKAG 297 Query: 285 WKYISVFPSSIFWEKAREIRXXXXXXXXXXXXXXXXVISYFARKNYNPVRELVNLFSGAK 344 ++Y+S+ P+++F ++ +I+ + ++Y P+ ++ K Sbjct: 298 FRYVSITPNNVFMKQVNQIQSWSLGLFLLCLIAGLLAVVAGVYRSYKPLHATIHAIMRGK 357 Query: 345 DEQSRRVLDEFAFIRESALATIRERDDINSRQFRQLRVLQTYYLSRLLRGQIEDGLTVGE 404 R +E+ FIR++ +I E + + RQ ++ YLSRLL G ++ L+ Sbjct: 358 AINGRSFNNEYEFIRQTFEGSIHEEKHLRNTLTRQTPFIRANYLSRLLHGYMDVDLSSES 417 Query: 405 AARLH--HFEWESEDFAVLLFYIQG----SSEGGPSPSLANFIVSNILKDFTGGHHGLSF 458 LH + + S+ FAV L I+ S E + A F+VSNI D G Sbjct: 418 EESLHFMNLNFISDRFAVFLVKIEDVHLFSDEDEEKWARARFVVSNIGIDLIGTPQKGYV 477 Query: 459 TEMD-GMLAAVVNIRAGRADSWKEDMEEALAQTM-EFIAHKYRLQIVMAGSERHTGLNSL 516 E++ LA ++N+ R + +E + + Q++ E ++ K+++ I +A H G ++ Sbjct: 478 VELERDRLAFLINLDKERRN--EEVVIHDIVQSLYEVLSKKFKIGITIAAGGVHEGPKAI 535 Query: 517 HQGYLQALEAQEYRLVLEENGPVWYGEIQPQPTDYYLSLNDEVVFINLIKSGELEKASGM 576 Y +AL A EYRL+L +N +++ ++ YY L E+ N ++SG+ + A + Sbjct: 536 RNSYPEALAALEYRLILGKNAIIYFQDLASTKQHYYYPLEIEIQLTNFVRSGDTDNAGKL 595 Query: 577 VDDIL-ARFFGSQVSVELVRYAMIDMTSSIMKAV--PQETQRSKLWEEWRPMKRLLVCTT 633 +D I F S + E+ + ++ S+ +K + Q +L E++ P+K + TT Sbjct: 596 LDKIYEMNFSSSHFTPEMGKCLFFNIISTFLKIMNSTNMNQLEELGEDFDPIKAVFTYTT 655 Query: 634 RGEFRQELMELTAMACGMANEKLTLISNTGIGEEVSAYVKDNYADINLSVSMIGAHFGIT 693 + + EL N + + T + +++ AYV+ D +L ++MI HF +T Sbjct: 656 AEGMQCKTKELYDTLTRSFNVERS-DHRTQLLQDILAYVEQMLGDSSLGLAMIAEHFRMT 714 Query: 694 PQYVSKLFKEQTGQGLHDYISQVRTEAAKAYL-QEGITIEEISARVGFSSSSAFIRVFKK 752 P Y+S FK+ GQ L DYI+Q R +AAK + + +TI +I+ VG+++ FIR FKK Sbjct: 715 PPYISTFFKKNQGQNLIDYITQKRMKAAKQLMDNKDLTIAQIAQLVGYNNDVVFIRGFKK 774 Query: 753 YEGITPGRFK 762 EGITPG+++ Sbjct: 775 LEGITPGKYR 784 >B3KHE9.1 B3KHE9_9BACI Helix-turn-helix-domain containing protein AraC type Length = 790 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 197/777 (25%), Positives = 380/777 (48%), Gaps = 39/777 (5%) Query: 13 QSVAFKWIVSYAVIMLIPLVVSAIIYLQTKQIVEYEIERAGHAMLKQMQNTVDSEINQAE 72 +S+ + +VS +++L+P+++ + Y + I++ ER+ ML+QM+ +DS + E Sbjct: 15 RSLFIRMLVSNCLLLLVPILIWFVFYTNIEHIMKSNAERSNLGMLEQMRLNIDSHFKEIE 74 Query: 73 KLAMQLSIHNDVNKYLNLTPGEEGTQAFEIYKTRQELSKYKS--TNDFVSGIYLYSSLLD 130 +L+ Q+ I N +YL T ++ ++ + + + ++ K S T DFV Y++ D Sbjct: 75 QLSHQI-ILNPKLRYLLDTENKDLSERYHLVQFTRDYLKMHSRMTKDFVYDFYIFLDRSD 133 Query: 131 KVLTDETYTDSKTFYEINRQMIGLSYEDWLSALKGDAGKGKDALPLIEFKRWG------T 184 V+ TDS FY+ + L+YE+W + + + LP +R G Sbjct: 134 SVIKPNLVTDSHNFYDKYYRFEHLTYEEWRKQMT--SYHSQTYLPSSTLQRNGYLKDDPM 191 Query: 185 NVVLMKPFSNAGGEHTLRGALILPLNGSKIQNMLKNVDWVNNGDVYIVDRNHQVLFQNNS 244 V+ ++G L + ++ +KI M + ++ N VYIV++NH+++ Sbjct: 192 QVITFMQSLPVEETSNMKGNLTVLIDETKIHEMTRQIESANGSSVYIVNQNHELISSTPG 251 Query: 245 MAGLESVPWAEEGGKGAGTSFIDIAGTENMVSFIASDTTDWKYISVFPSSIFWEKAREIR 304 + L S E +G ++ G + VSF S W YI+V P +++ +K +++ Sbjct: 252 ASPL-SNSILNELKSNSGLRNYNLNGQDVTVSFTTSGQVGWYYIAVMPLNVYLQKVKQME 310 Query: 305 XXXXXXXXXXXXXXXXVISYFARKNYNPVRELVNLFSGAKDEQSRRVLDEFAFIRESALA 364 A +NY P++ ++ K + ++EF +I E Sbjct: 311 HLALWLLLLCILAGSAAAYGIAYRNYFPIKRMIEAIQAGKSHPRKPAVNEFDYILEMMKI 370 Query: 365 TIRERDDINSRQFRQLRVLQTYYLSRLLRGQIEDGLTVGEAARLHHFEWESEDFAVLLFY 424 + E I ++ +QL +L++ YL R+L+G E + ++ + F V+L Sbjct: 371 SWDEERHIKNKLTQQLPILRSNYLHRVLQGYFEPPEQMKQSLEFMGIHFPFPHFIVILVQ 430 Query: 425 IQGSSEGGPSPS-----LANFIVSNILKDFTGGHHGLSFTEMD-GMLAAVVNIRAGRADS 478 + + P+ S L FI+SN+ +D H + +++ LA +VN+ + D Sbjct: 431 VDDMTRFAPNQSEKQWALVRFIISNLAEDTVYEGHTIHTIDLEKDRLALLVNLLPDQMDH 490 Query: 479 WKEDMEEALAQTMEFIAHKYRLQIVMAGSERHTGLNSLHQGYLQALEAQEYRLVLEENGP 538 +++ ++ + +++L+I +A S H G + + + YL+A A EYR+V + Sbjct: 491 PTCRVKDIVSGLHRMLETRFKLEISIAISGVHKGQHQIGEAYLEAAAALEYRMVNGQLST 550 Query: 539 VWYGEIQPQPTDYYLSLNDEVVFINLIKSGELEKASGMVDDILARFFGSQ-VSVELVRYA 597 +Y +I+ + YY + E+ IN I+SG+ E+ ++ + R F + ++ EL R Sbjct: 551 FYYHDIRQKKLQYYYPVETELQLINCIRSGDTEQVVQLLTQLFDRNFRDESITPELGRCL 610 Query: 598 MIDMTSSIMKAVPQETQR---SKLWE-EWRPMKRLLVCTTRGEFRQELMELTAMAC---- 649 + + ++++ + ++ KL E + P++ LL C T E ++ +L A Sbjct: 611 LFSLAGTLLRIMASDSDTLAYRKLTEGDIHPVRFLLSCKTTDEMFEKAKDLYVSAAESFK 670 Query: 650 ---GMANEKLTLISNTGIGEEVSAYVKDNYADINLSVSMIGAHFGITPQYVSKLFKEQTG 706 NE+L L ++ ++ NYAD N+S++++ H ITPQY+S+ FK +G Sbjct: 671 LERSDHNEQLLL--------QIQTCIQANYADPNMSLNLVSEHLQITPQYISQFFKRVSG 722 Query: 707 QGLHDYISQVRTEAAKAYLQE-GITIEEISARVGFSSSSAFIRVFKKYEGITPGRFK 762 Q +DY++ VR + AK + + G+T +I+ VG++S + FIRVFKK EGITPG+++ Sbjct: 723 QNFNDYLTVVRMDHAKKLMSDPGLTNAQIAKMVGYTSDTVFIRVFKKVEGITPGKYR 779 >B3K6G9.1 B3K6G9_9BACI Helix-turn-helix-domain containing protein AraC type Length = 777 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 179/776 (23%), Positives = 371/776 (47%), Gaps = 60/776 (7%) Query: 14 SVAFKWIVSYAVIMLIPLVVSAIIYLQTKQIVEYEIERAGHAMLKQMQNTVDSEINQAEK 73 SV ++SY V++LIP++V +Y Q ++I+ + A+++Q + VDS +++ Sbjct: 18 SVFVTLLMSYLVVLLIPVIVFWGLYTQIERIMIENANNSNMALIEQAKQVVDSRLDEMHL 77 Query: 74 LAMQLSIHNDVNKYLNLTPGEEGTQAFEIYKTRQELSKYKSTNDFVSGIYLYSSLLDKVL 133 ++ ++ H ++ L + G + + Y QE+ +Y++++ F++ Y+Y D VL Sbjct: 78 ISRNITSHPRLDALLKAGSPQTGAEHYNYYTFMQEMQRYRNSSSFITDFYVYLDESDTVL 137 Query: 134 TDETYTDSKTFYEINRQMIGLSYEDWLSALKGDAGKG---KDALPLIEFKRWGTNVVLMK 190 + T S + L+++ + + D +G LP+ E + G N M Sbjct: 138 SPTLKTTSSVLFSDIYGYESLTFQQY----QADILRGVHFNRYLPVTEVGK-GLNQKRML 192 Query: 191 PFSNA---GGEHTLRGALILPLNGSKIQNMLKNVDWVNNGDVYIVDRNHQVLFQNNSMAG 247 + G ++ +GAL++ ++ +I +L+ + NNG + I D + QV+ + G Sbjct: 193 TYMQTLPFGEKNNPKGALVMLIDERQITGLLEEIVKTNNGTISIKDASGQVILRAGE-TG 251 Query: 248 LESVPWAEEGGKGAGTSFIDIAGTENMVSFIASDT--TDWKYISVFPSSIFWEKAREIRX 305 + +V AE+ + V ++S + + W+Y+SV P +F EK ++ Sbjct: 252 VSNVGKAED---------------KQAVMTVSSRSARSGWEYVSVVPEKVFMEKVNMVKR 296 Query: 306 XXXXXXXXXXXXXXXVISYFARKNYNPVRELVNLFSGAKDEQSRRVLDEFAFIRESALAT 365 +Y + Y P+R+++ + + +V +E+ FI+ + + Sbjct: 297 MAAGVLGICLAAGVAACAYMTYRAYYPLRDIIRFIRQSHPVKEGKVRNEYDFIKSTMADS 356 Query: 366 IRERDDINSRQFRQLRVLQTYYLSRLLRGQIEDGLTVGEAARLHHFEWESEDFAVLLFYI 425 ++ ++ + RQ V+++ +L RLL+G ++ A + FAV L + Sbjct: 357 FGKQTEMKEQLSRQTPVIRSNFLQRLLKGNVDAADMSEHALEFMGISFPFPGFAVALIEL 416 Query: 426 QGSS-----EGGPSPSLANFIVSNILKDFTGGHHGLSFTEMD---GMLAAVVNI------ 471 + +S E +L F+ + ++ H + +D +A ++N+ Sbjct: 417 RDASGFIHNERESEWALIRFVTGKVAEEI----HPFTAYSVDLEKNQVAMILNMPEPLQD 472 Query: 472 RAGRADSWKEDMEEALAQTMEFIAHKYRLQIVMAGSERHTGLNSLHQGYLQALEAQEYRL 531 +AG W E ++ + Q +++ +I +A S+ + L L GY Q+L+A EY + Sbjct: 473 KAGELYDWAEQVKLVIEQ-------RFKSEITIAISDIRSDLGCLASGYTQSLKALEYSI 525 Query: 532 VLEENGPVWYGEIQPQPTDYY-LSLNDEVVFINLIKSGELEKASGMVDDILA-RFFGSQV 589 ++Y E++ + YY + E+ IN +KSG+ +KA ++ + F G + Sbjct: 526 FTAYKPILFYDEMKQKTGVYYDFPIETEIQLINAMKSGDTDKAQDIIQSLYHNNFSGQSI 585 Query: 590 SVELVRYAMIDMTSSIMKAVPQETQRSK--LWEEWRPMKRLLVCTTRGEFRQELMELTAM 647 S EL R ++ S++ K + + + + + ++ + +T E +E+ + Sbjct: 586 SPELGRLMFANLLSTMFKLLNALNLKYEDVFGQAGKSIEDITEGSTVEELYREVKWMFGQ 645 Query: 648 ACGMANEKLTLISNTGIGEEVSAYVKDNYADINLSVSMIGAHFGITPQYVSKLFKEQTGQ 707 C ++ S++ + +++ +Y+ +++ D +S++ I F ITP Y+S FK+ +G Sbjct: 646 VCLYVRDQRG-DSSSQLLDKIKSYITEHHDDAMISLASIAEQFDITPPYLSAFFKKNSGT 704 Query: 708 GLHDYISQVRTEAAKAYLQEGI-TIEEISARVGFSSSSAFIRVFKKYEGITPGRFK 762 L DY++++R E +K +++ TI I+ VG++S FIRVFKKYEGITPG++K Sbjct: 705 NLTDYLAKIRIERSKEMMRDAKNTISHIARSVGYTSDVGFIRVFKKYEGITPGKYK 760 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,287,713,969 Number of extensions: 175937476 Number of successful extensions: 481870 Number of sequences better than 1.0e-05: 1231 Number of HSP's gapped: 486833 Number of HSP's successfully gapped: 1242 Length of query: 765 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 621 Effective length of database: 1,704,070,043 Effective search space: 1058227496703 Effective search space used: 1058227496703 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)