BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0068.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7I7.1 B1D7I7_9BACL Binding-protein-dependent transport system... 392 e-107 B9MMV2.1 B9MMV2_ANATD Binding-protein-dependent transport system... 367 e-100 B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport system... 357 6e-97 B3KHN4.1 B3KHN4_9BACI Binding-protein-dependent transport system... 356 1e-96 B1DGQ2.1 B1DGQ2_9BACL Binding-protein-dependent transport system... 354 5e-96 >B1D7I7.1 B1D7I7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/302 (60%), Positives = 244/302 (80%) Query: 1 MLKTRLQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFK 60 M K R +D NK LY+M+LPV+ YY++FHY+P+YG +IAFK++ P +GIL SDWVG K Sbjct: 1 MGKNRFIRDFKLNKLLYLMMLPVIAYYLIFHYIPMYGALIAFKEYSPMKGILHSDWVGLK 60 Query: 61 HFEEFFSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPH 120 HF +FF S YF R++KNT+++S ++L+F FPAPIILALL+NE+++ F+R+ QTITYMP+ Sbjct: 61 HFHDFFGSYYFTRILKNTLVISLYSLIFEFPAPIILALLINEVRNKTFKRVAQTITYMPY 120 Query: 121 FITLVVVAGIIRYFTLSDGLINDVIAFFGGARISFMQQPESFRPIYIVSEIWQQIGWGTI 180 FI+LVV+ GII FT +DG+IN + G + +Q+PE FRPIYI+SEIWQ+IGW +I Sbjct: 121 FISLVVICGIITDFTNADGIINRLFMLIGYDGQAMLQKPELFRPIYILSEIWQRIGWESI 180 Query: 181 IYLAAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKII 240 IY+AA+ IDQ+QYEAA+IDGA++++QI +TLPGILPT+ IM IL +GN++NVGFEKII Sbjct: 181 IYIAALMSIDQEQYEAARIDGASRIKQIFFITLPGILPTITIMFILRMGNMLNVGFEKII 240 Query: 241 LLYSASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNS 300 LLY+ Y TADVIS+FVYRKG+LEF +SYS+AVGLFNSV+N LL+ AN S++ K+S Sbjct: 241 LLYNPVTYNTADVISSFVYRKGLLEFGWSYSSAVGLFNSVVNLALLVTANYISRKVNKSS 300 Query: 301 LW 302 LW Sbjct: 301 LW 302 >B9MMV2.1 B9MMV2_ANATD Binding-protein-dependent transport systems inner membrane component Length = 317 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/302 (57%), Positives = 234/302 (77%), Gaps = 4/302 (1%) Query: 5 RLQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHFEE 64 L+KDL+RNK LY+MI+PV+ YY +FHY+P+YG IAFK F P++GI S WVG + F+E Sbjct: 16 ELKKDLIRNKSLYLMIIPVVAYYFIFHYIPMYGLQIAFKDFTPAKGIWGSPWVGLEKFKE 75 Query: 65 FF--SSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFI 122 FF S Y +R+I+NTIL++ ++L+FGFPAPII ALLLNE+K+ I++R QT++YMPHFI Sbjct: 76 FFVYDSFYVWRIIRNTILINVYDLIFGFPAPIIFALLLNEIKNSIYKRTLQTVSYMPHFI 135 Query: 123 TLVVVAGIIRYFTLSDGLINDVIAFFG--GARISFMQQPESFRPIYIVSEIWQQIGWGTI 180 + VV+ G+I F DGLIN ++ G ISFM +P FRP+Y+ S IWQ +GWG+I Sbjct: 136 STVVIVGMIMDFFARDGLINQILKSLGILSEPISFMTEPGWFRPLYVGSGIWQNLGWGSI 195 Query: 181 IYLAAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKII 240 +YLAAI+ ID Q YEAA IDGA + +Q +VT+PGILPT++IM +L +G++MNVGFEK+ Sbjct: 196 VYLAAISNIDPQLYEAALIDGAGRFRQTLYVTIPGILPTIVIMFLLRVGHMMNVGFEKVF 255 Query: 241 LLYSASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNS 300 L+Y+ YETADVIST+VYRKG+LE YSY AAVGLFNSVINF L++ +N +K+ T+ S Sbjct: 256 LMYNPLTYETADVISTYVYRKGLLEMDYSYGAAVGLFNSVINFLLVIFSNKIAKKLTETS 315 Query: 301 LW 302 LW Sbjct: 316 LW 317 >B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 163/299 (54%), Positives = 233/299 (77%) Query: 4 TRLQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHFE 63 T + DL RNK++Y++ LPV++YY +FHY P+YG ++AFK F + GI S+W+GF+HF Sbjct: 17 TTIANDLKRNKFVYILALPVILYYAVFHYGPMYGLLMAFKDFSIADGIWGSEWIGFEHFR 76 Query: 64 EFFSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFIT 123 FF+S YF R+++NT+L++ + L+F FPAPIILALLLNE++S +F+R QTI+Y+PHF++ Sbjct: 77 NFFNSYYFERLLRNTVLINVYELIFAFPAPIILALLLNEIRSRLFKRTVQTISYLPHFVS 136 Query: 124 LVVVAGIIRYFTLSDGLINDVIAFFGGARISFMQQPESFRPIYIVSEIWQQIGWGTIIYL 183 +VVV GI+ F DGL+N ++ FFG I FM + FR +Y+ S IWQ +GWG+IIYL Sbjct: 137 IVVVTGIMFDFLARDGLVNQILGFFGIESIPFMSEASWFRTLYVGSGIWQGVGWGSIIYL 196 Query: 184 AAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKIILLY 243 AAI ID YEAAK+DGA + +Q+ H+TLPG+LPT++I+ IL +G++++VG EK++L+Y Sbjct: 197 AAIATIDPTLYEAAKMDGAGRWKQMLHITLPGMLPTIIIIFILNMGSMLSVGSEKVLLMY 256 Query: 244 SASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNSLW 302 S YETADVISTFVYR+G+LE Y ++ AVGLFN+V++F LL+LANS SKR +++ LW Sbjct: 257 SPLTYETADVISTFVYRRGVLETDYGFTTAVGLFNAVVSFILLVLANSISKRVSEHKLW 315 >B3KHN4.1 B3KHN4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 162/299 (54%), Positives = 233/299 (77%), Gaps = 1/299 (0%) Query: 5 RLQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHFEE 64 R+ KD RNKWLYV+ +P++ YYVLF Y+P+YG VIAFK + P QG+ S+WVG +HF Sbjct: 4 RVAKDFNRNKWLYVLAIPIVAYYVLFQYLPMYGAVIAFKDYSPIQGVWGSEWVGLEHFRS 63 Query: 65 FFSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFITL 124 F +S YF+R+ +NT+LLS ++L+F F API+LALL++E++S + QT+++MP+FI+L Sbjct: 64 FINSHYFWRLFRNTVLLSLYSLVFDFTAPIVLALLIHEVRSRYIKSFVQTVSFMPYFISL 123 Query: 125 VVVAGIIRYFTLSDGLINDVIAFF-GGARISFMQQPESFRPIYIVSEIWQQIGWGTIIYL 183 +VV G+++ T S G+ N F GG +QQP FR IY++SEIWQ++GW +IIY Sbjct: 124 IVVCGLVKDLTQSGGVANLAFTFLTGGDGQDLLQQPGLFRGIYVMSEIWQRVGWESIIYA 183 Query: 184 AAITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKIILLY 243 AA++ I Q QYEAA+IDGA++L+QIR +TLPG+LPT+ IM IL +G++M+VG+EKI+LLY Sbjct: 184 AALSTIPQAQYEAARIDGASRLRQIRSITLPGLLPTIAIMFILRVGHLMDVGYEKILLLY 243 Query: 244 SASIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNSLW 302 + IYETADVISTFVYRKG+L+ +S+S+A+GLFNS IN +L++AN+ +++ +NSLW Sbjct: 244 NPVIYETADVISTFVYRKGLLDNDWSFSSAIGLFNSAINLLMLVIANALTRKTNQNSLW 302 >B1DGQ2.1 B1DGQ2_9BACL Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 354 bits (909), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 170/297 (57%), Positives = 230/297 (77%) Query: 6 LQKDLLRNKWLYVMILPVLIYYVLFHYVPLYGTVIAFKQFVPSQGILSSDWVGFKHFEEF 65 ++ D+ R+ +Y+M LPVL YY++FHY P+YG IAFK F PS GI S WVGFKHFE F Sbjct: 14 IKTDMKRHWGVYLMALPVLAYYIIFHYGPMYGLQIAFKDFQPSDGIWGSAWVGFKHFESF 73 Query: 66 FSSIYFFRVIKNTILLSFFNLLFGFPAPIILALLLNELKSPIFRRITQTITYMPHFITLV 125 F+ IYF+R+I NTILL+ + LLFGFPA IILALLLNE++ F+RI Q+I+Y+PHFI++V Sbjct: 74 FNGIYFWRLITNTILLNLYELLFGFPAAIILALLLNEIRKSSFKRIVQSISYLPHFISIV 133 Query: 126 VVAGIIRYFTLSDGLINDVIAFFGGARISFMQQPESFRPIYIVSEIWQQIGWGTIIYLAA 185 VVAG++ F GL+N ++ FG I F+ + FR +Y+ S +WQ +GWG+IIYLAA Sbjct: 134 VVAGMMVDFLSRAGLVNQLLGSFGIQPIDFLMEEGWFRFLYVSSGVWQGVGWGSIIYLAA 193 Query: 186 ITGIDQQQYEAAKIDGATKLQQIRHVTLPGILPTVMIMLILAIGNIMNVGFEKIILLYSA 245 I+GID YEAA+IDGA + +Q +VTLPGI+PT++I+LIL +GN+M+VG EK++LLY+ Sbjct: 194 ISGIDPTLYEAARIDGAGRWRQTLNVTLPGIMPTIIILLILQMGNMMSVGSEKVLLLYNP 253 Query: 246 SIYETADVISTFVYRKGILEFSYSYSAAVGLFNSVINFTLLLLANSFSKRATKNSLW 302 Y TADVIST+VYRKG+LE SYS++AAVGLFNS+I+F L++ AN S+R ++ LW Sbjct: 254 LTYSTADVISTYVYRKGVLEASYSFTAAVGLFNSIISFILIVAANKISRRFSETKLW 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,644,048,986 Number of extensions: 65328260 Number of successful extensions: 261379 Number of sequences better than 1.0e-05: 5242 Number of HSP's gapped: 257516 Number of HSP's successfully gapped: 5242 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)