BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0067.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6G6.1 B3K6G6_9BACI Binding-protein-dependent transport system... 337 7e-91 B1DGQ1.1 B1DGQ1_9BACL Binding-protein-dependent transport system... 330 9e-89 B1DEK3.1 B1DEK3_9BACL Binding-protein-dependent transport system... 330 1e-88 B1D7I6.1 B1D7I6_9BACL Binding-protein-dependent transport system... 328 2e-88 B3KHE8.1 B3KHE8_9BACI Binding-protein-dependent transport system... 328 4e-88 >B3K6G6.1 B3K6G6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 337 bits (864), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 161/287 (56%), Positives = 218/287 (75%) Query: 5 SLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEGYKA 64 S+ E +FD NV ++ L+ I+TLYP LY+LF+S+S + GILLWP+GFSL+ Y+ Sbjct: 6 SVSEVLFDSANVFLLCLLSIITLYPFLYVLFASISTPAEFVQHRGILLWPKGFSLDSYRM 65 Query: 65 VLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFFQGG 124 V NP I+ + NT F +VVG +N+ +T+LGAY LSR V+ + IM IV TMFF GG Sbjct: 66 VFENPNIIRSYLNTIFYVVVGTTLNILMTALGAYGLSRKNVMWKGAIMMLIVMTMFFDGG 125 Query: 125 LVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHFTIL 184 L+P YL+VK+ GLLD+ WALI+P+A++T+NLIIMRT F +P LEESA +DGA +TIL Sbjct: 126 LIPKYLLVKNMGLLDTYWALIIPSAMTTWNLIIMRTAFQGVPDALEESARIDGATDWTIL 185 Query: 185 FRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNASMLG 244 FRI +PLS+PV+AV++L+YGV HWN WF+A+I+LRD+DLFP+QL++R I+++ND +SM+ Sbjct: 186 FRIIIPLSLPVIAVMVLFYGVWHWNKWFDALIYLRDRDLFPLQLILREILIQNDTSSMMT 245 Query: 245 TTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALK 291 + V ET+KYA I+V T PIL LYPFLQKYFVKGVM+GA+K Sbjct: 246 SVGGGDRMPVGETIKYATIMVATLPILFLYPFLQKYFVKGVMIGAIK 292 >B1DGQ1.1 B1DGQ1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 330 bits (846), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 153/291 (52%), Positives = 216/291 (74%) Query: 2 IKTSLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEG 61 +K ++GER+F NVI+M+ + ++TLYP LY+LF+S S+ + G+LL P GF L Sbjct: 1 MKRTMGERVFGWINVILMIGLCVVTLYPFLYVLFASFSDATAFLQNRGVLLAPAGFDLSA 60 Query: 62 YKAVLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFF 121 YKAV NP+I+ G++NT +++G IN+ +T++GAY LSR + + +MF IV TM F Sbjct: 61 YKAVFRNPMIMKGYENTLLYVLLGTAINLVMTAIGAYVLSRPNLYFRHFLMFLIVLTMVF 120 Query: 122 QGGLVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHF 181 GGL+P YL+V G+++++WAL++P A++T+NLIIMRT F IP LEESA +DGAG + Sbjct: 121 HGGLIPSYLLVNKLGMMNTMWALLIPVAINTYNLIIMRTSFQTIPVSLEESARMDGAGEW 180 Query: 182 TILFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNAS 241 TILFRI LPLSMPV+AV+IL+Y VGHWNS+FNA+++LRD +P+QLV+R+I++ N S Sbjct: 181 TILFRIVLPLSMPVIAVMILWYAVGHWNSYFNALVYLRDTQKYPLQLVLRDILIANSTDS 240 Query: 242 MLGTTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALKG 292 M+ + ET+KY+ IIV+T PI+ LYPFLQKYFVKGVM+GA+KG Sbjct: 241 MMTGAASDDKYAIGETIKYSTIIVSTLPIICLYPFLQKYFVKGVMIGAIKG 291 >B1DEK3.1 B1DEK3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 157/289 (54%), Positives = 218/289 (75%) Query: 3 KTSLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEGY 62 + + E+IFD+ N ++M++++++TLYP LY+LF+S S LI G+LL P GFSLE Y Sbjct: 4 RVPIREQIFDVANTLLMLILVVITLYPFLYVLFASFSNPADLIQHRGLLLAPAGFSLESY 63 Query: 63 KAVLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFFQ 122 K V NP+I G+ NT ++ G +N+ +TS AY LSR GV L P+MF IVFTMFF Sbjct: 64 KLVFENPMISIGYLNTLIYVIGGTALNLVMTSFAAYALSRRGVKLIGPVMFGIVFTMFFS 123 Query: 123 GGLVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHFT 182 GGL+P YL +K+ GLLD+ WA+ILP+A+ST+NL++MRT F +IP LEESA +DGA F Sbjct: 124 GGLIPTYLNMKNLGLLDNRWAMILPSAISTWNLLVMRTSFASIPMALEESARIDGANDFK 183 Query: 183 ILFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNASM 242 ILFRIF+P+S+P++AV+ L+YGVGHWNS+ +A+I+LR +DL+P+QLV++ I++ N SM Sbjct: 184 ILFRIFIPVSLPIMAVMTLFYGVGHWNSYMDALIYLRTRDLYPLQLVLQEILITNSTDSM 243 Query: 243 LGTTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALK 291 + T + + ET+KYA IIV T PILLLYPFLQ+YFVKGVM+G++K Sbjct: 244 MSTVADVDKGLITETIKYATIIVATVPILLLYPFLQRYFVKGVMLGSIK 292 >B1D7I6.1 B1D7I6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/291 (54%), Positives = 212/291 (72%) Query: 2 IKTSLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEG 61 +K +L ER+FD+ V++L+I+ TLYP+LY+LF+S S+ +L++ GIL P G S + Sbjct: 3 MKATLSERVFDVVIYAVLILLIVSTLYPLLYVLFASFSDAGQLVANKGILWHPLGLSFDA 62 Query: 62 YKAVLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFF 121 Y +V NP I +G+KNT FILV G +N+ +T+LGAY LSR V+ M I+ TMFF Sbjct: 63 YTSVFKNPGITTGYKNTLFILVCGTVLNLIMTALGAYVLSRRDVMWNNLFMGMILLTMFF 122 Query: 122 QGGLVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHF 181 GGL+P YL+VK GLL++LWA I+P A+STFNLIIMRT F IP+ LEESA +DGA HF Sbjct: 123 SGGLIPLYLVVKGVGLLNTLWATIVPFAISTFNLIIMRTAFKGIPEALEESAKIDGANHF 182 Query: 182 TILFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNAS 241 TILFRI +PLSMPV+AV+ILYY V WN WF A IF+R ++LFP+QLV+R I++ N S Sbjct: 183 TILFRIIIPLSMPVIAVMILYYAVDKWNGWFYASIFIRSRELFPLQLVLREILIANSTDS 242 Query: 242 MLGTTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALKG 292 M + + ET+KYA I+V T PIL +YPF+Q++FVKGVMVG++KG Sbjct: 243 MASGASAGDRFQIGETIKYATIMVATVPILCVYPFVQRFFVKGVMVGSVKG 293 >B3KHE8.1 B3KHE8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 159/289 (55%), Positives = 214/289 (74%) Query: 3 KTSLGERIFDICNVIVMVLMIILTLYPMLYILFSSLSEGNRLISFDGILLWPQGFSLEGY 62 K SLGE IF + N M+L+ +TLYP LY+LF+SLS+ + F G+L +P GF+L+ Y Sbjct: 4 KRSLGESIFSVVNTCFMLLLCFVTLYPFLYVLFASLSDPAEIAQFRGMLFFPTGFNLDAY 63 Query: 63 KAVLNNPVILSGFKNTFFILVVGLGINMTLTSLGAYFLSRDGVLLQKPIMFFIVFTMFFQ 122 KAV++NP+IL+G++NT F + G IN+ +T+LGAY LSR V IMF IV TM F Sbjct: 64 KAVMDNPMILTGYRNTLFYVAGGTIINLFMTTLGAYALSRRNVYFNNFIMFIIVITMVFN 123 Query: 123 GGLVPFYLIVKSYGLLDSLWALILPTAVSTFNLIIMRTYFMAIPKELEESAFLDGAGHFT 182 GGL+P +L+V S G+LD+ WAL+LP A+S+FNLIIMRT F A+P LEESA +DGA + Sbjct: 124 GGLIPTFLLVNSLGMLDTPWALLLPGAISSFNLIIMRTAFQAVPVSLEESARIDGANDWI 183 Query: 183 ILFRIFLPLSMPVVAVLILYYGVGHWNSWFNAMIFLRDQDLFPIQLVVRNIILENDNASM 242 I+ RI +PLSMPV+AV++L+Y VGHWNS+F+A+I+LRD++LFP+QLV+R I++ N SM Sbjct: 184 IMSRIIVPLSMPVIAVMVLWYAVGHWNSYFSALIYLRDRELFPLQLVLREILISNSTDSM 243 Query: 243 LGTTTLIQSRDVAETLKYAAIIVTTAPILLLYPFLQKYFVKGVMVGALK 291 D+ T+KYA II++T PIL LYPFLQKYFV GV++GALK Sbjct: 244 TTDAAATDRLDIGITIKYATIIISTLPILCLYPFLQKYFVHGVLIGALK 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.147 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,666,762,470 Number of extensions: 69746254 Number of successful extensions: 261976 Number of sequences better than 1.0e-05: 5724 Number of HSP's gapped: 254019 Number of HSP's successfully gapped: 5727 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)