BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0065.p
         (113 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2BEK7.1 Q2BEK7_9BACI Transcriptional regulator, PadR family pro...   157   4e-37
C2PB84.1 C2PB84_BACCE Transcriptional regulator, PadR                 147   3e-34
C3HWP0.1 C3HWP0_BACTU Transcriptional regulator, PadR                 146   6e-34
Q63F24.1 Q63F24_BACCZ Transcriptional regulator, PadR family          146   6e-34
A0RAK6.1 A0RAK6_BACAH Transcriptional regulator, PadR family          146   6e-34

>Q2BEK7.1 Q2BEK7_9BACI Transcriptional regulator, PadR family protein
          Length = 113

 Score =  157 bits (396), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 86/98 (87%)

Query: 1   MGRDKHLPLTETVYYILLALHEPAHGYLILQKVEELSGGQVRMAAGTLYGAIENLIKLRF 60
           M RDKHLPLTETVYYILL+L EPAHGY+ILQKVEELSGG+VRMAAGTLYGA+ENL KL+F
Sbjct: 10  MKRDKHLPLTETVYYILLSLLEPAHGYIILQKVEELSGGEVRMAAGTLYGALENLQKLKF 69

Query: 61  IEPVGSVDSRRKVYVITEAGRAVLSLDFERMNHMIETT 98
           I+PV S DSRRKV+VI+E G+ +L LD++RM HM   T
Sbjct: 70  IQPVKSDDSRRKVFVISEKGKEMLLLDYQRMQHMTRIT 107


>C2PB84.1 C2PB84_BACCE Transcriptional regulator, PadR
          Length = 104

 Score =  147 bits (371), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 82/101 (81%)

Query: 1   MGRDKHLPLTETVYYILLALHEPAHGYLILQKVEELSGGQVRMAAGTLYGAIENLIKLRF 60
           M RDK+LPLTET YY+LLAL EPAHGYLI+QKVEELS  QV++AAGTLYGA+ENL+K   
Sbjct: 1   MNRDKNLPLTETTYYVLLALLEPAHGYLIMQKVEELSNHQVKIAAGTLYGAVENLLKQEL 60

Query: 61  IEPVGSVDSRRKVYVITEAGRAVLSLDFERMNHMIETTRRI 101
           IE V S D RRKVYVITE G+ VL LDF RM H+IE T+ +
Sbjct: 61  IESVKSEDKRRKVYVITERGKEVLHLDFMRMQHIIEVTKSL 101


>C3HWP0.1 C3HWP0_BACTU Transcriptional regulator, PadR
          Length = 104

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 82/101 (81%)

Query: 1   MGRDKHLPLTETVYYILLALHEPAHGYLILQKVEELSGGQVRMAAGTLYGAIENLIKLRF 60
           M RDK+LPLTET YY+LLAL EPAHGYLI+QKVEELS  QV++AAGTLYGAIENL+K   
Sbjct: 1   MNRDKNLPLTETTYYVLLALLEPAHGYLIMQKVEELSNHQVKIAAGTLYGAIENLLKQGL 60

Query: 61  IEPVGSVDSRRKVYVITEAGRAVLSLDFERMNHMIETTRRI 101
           IE V S D RRKVYVITE G+ VL LDF RM H+IE T+ +
Sbjct: 61  IESVKSEDKRRKVYVITERGKEVLHLDFMRMQHIIEVTKSL 101


>Q63F24.1 Q63F24_BACCZ Transcriptional regulator, PadR family
          Length = 108

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 82/101 (81%)

Query: 1   MGRDKHLPLTETVYYILLALHEPAHGYLILQKVEELSGGQVRMAAGTLYGAIENLIKLRF 60
           M RDK+LPLTET YY+LLAL EPAHGYLI+QKVEELS  QV++AAGTLYGA+ENL+K   
Sbjct: 5   MNRDKNLPLTETTYYVLLALLEPAHGYLIMQKVEELSNQQVKIAAGTLYGAVENLLKQGL 64

Query: 61  IEPVGSVDSRRKVYVITEAGRAVLSLDFERMNHMIETTRRI 101
           IE V S D RRKVYVITE G+ VL LDF RM H+IE T+ +
Sbjct: 65  IESVKSEDKRRKVYVITERGKEVLHLDFMRMQHIIEVTKSL 105


>A0RAK6.1 A0RAK6_BACAH Transcriptional regulator, PadR family
          Length = 108

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 82/101 (81%)

Query: 1   MGRDKHLPLTETVYYILLALHEPAHGYLILQKVEELSGGQVRMAAGTLYGAIENLIKLRF 60
           M RDK+LPLTET YY+LLAL EPAHGYLI+QKVEELS  QV++AAGTLYGA+ENL+K   
Sbjct: 5   MNRDKNLPLTETTYYVLLALLEPAHGYLIMQKVEELSNQQVKIAAGTLYGAVENLLKQGL 64

Query: 61  IEPVGSVDSRRKVYVITEAGRAVLSLDFERMNHMIETTRRI 101
           IE V S D RRKVYVITE G+ VL LDF RM H+IE T+ +
Sbjct: 65  IESVKSEDKRRKVYVITERGKEVLHLDFMRMQHIIEVTKSL 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.139    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 633,505,374
Number of extensions: 21272304
Number of successful extensions: 55143
Number of sequences better than 1.0e-05: 273
Number of HSP's gapped: 55323
Number of HSP's successfully gapped: 273
Length of query: 113
Length of database: 3,060,696,203
Length adjustment: 80
Effective length of query: 33
Effective length of database: 2,307,015,003
Effective search space: 76131495099
Effective search space used: 76131495099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)