BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0064.p (208 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BEK6.1 Q2BEK6_9BACI Putative uncharacterized protein 227 5e-58 B7IK62.1 B7IK62_BACC2 Putative uncharacterized protein 214 5e-54 Q3ES10.1 Q3ES10_BACTI Putative uncharacterized protein 214 5e-54 C3IFQ9.1 C3IFQ9_BACTU Putative uncharacterized protein 214 5e-54 C2X826.1 C2X826_BACCE Putative uncharacterized protein 211 2e-53 >Q2BEK6.1 Q2BEK6_9BACI Putative uncharacterized protein Length = 209 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 110/208 (52%), Positives = 144/208 (69%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 MRKFK+F +FD+E WLN MA +G+ K+ Y F+KA+P A K+D+R FS + DF+ Sbjct: 1 MRKFKWFFDFDKEALWLNKMAGKGFLLESKTFGYRFRKAKPVRANYKIDFRQFSSQGDFD 60 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 DY LF DSGW+HI G+K+SG QYF + S + DIFSDADSKAGRYKR+SKM+L++ Sbjct: 61 DYLMLFRDSGWEHISGTKTSGSQYFIQASSEAEADIFSDADSKAGRYKRMSKMYLTLFWT 120 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 + P+ AL T +P ALLN + Y TPGLWEK G+ FW AFLFETPFAL RG +L Sbjct: 121 FLPILTALIVTDAIEPMALLNIKELYFTPGLWEKEGARFWSAFLFETPFALMRGASWLVL 180 Query: 181 PTVIILYLFFFFKANRLYKKIQGGNLIR 208 P ++ILYL F KA RLY++ + ++ Sbjct: 181 PAMLILYLVFSAKAERLYRETKDSGTLK 208 >B7IK62.1 B7IK62_BACC2 Putative uncharacterized protein Length = 203 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 102/200 (51%), Positives = 139/200 (69%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA IK+D+R FSRK+DF Sbjct: 2 MWRLKFFLDFEKEEKWLEEMAWKGYQLESNTFGYTFRYTEPEDATIKIDHRVFSRKSDFI 61 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G++ SG QYF+KV + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 62 NYCTLFEDSGWEHIAGNRWSGTQYFKKVDEESEDDIFSDPMSRAGKYKRLSKTFLELAIC 121 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 Y P+ + T A +NP+ YLTPGLW+K G SF +FLFETPFAL RGL + + Sbjct: 122 YLPILFLFMYSNTMNLGAFVNPKELYLTPGLWDKQGVSFLWSFLFETPFALMRGLFLTFI 181 Query: 181 PTVIILYLFFFFKANRLYKK 200 P V +Y +KANRLY++ Sbjct: 182 PVVTCMYFVCSYKANRLYEE 201 >Q3ES10.1 Q3ES10_BACTI Putative uncharacterized protein Length = 203 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 102/200 (51%), Positives = 139/200 (69%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA IK+D+R FSRK+DF Sbjct: 2 MWRLKFFLDFEKEEKWLEEMAWKGYQLESNTFGYTFRYTEPEDATIKIDHRVFSRKSDFI 61 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G++ SG QYF+KV + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 62 NYCTLFEDSGWEHIAGNRWSGTQYFKKVDEESEDDIFSDPMSRAGKYKRLSKTFLELAIC 121 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 Y P+ + T A +NP+ YLTPGLW+K G SF +FLFETPFAL RGL + + Sbjct: 122 YLPILFLFMYSNTMNLGAFVNPKELYLTPGLWDKQGVSFLWSFLFETPFALMRGLFLTFI 181 Query: 181 PTVIILYLFFFFKANRLYKK 200 P V +Y +KANRLY++ Sbjct: 182 PVVTCMYFVCSYKANRLYEE 201 >C3IFQ9.1 C3IFQ9_BACTU Putative uncharacterized protein Length = 203 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 102/200 (51%), Positives = 139/200 (69%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA IK+D+R FSRK+DF Sbjct: 2 MWRLKFFLDFEKEEKWLEEMAWKGYQLESNTFGYTFRYTEPEDATIKIDHRVFSRKSDFI 61 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G++ SG QYF+KV + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 62 NYCTLFEDSGWEHIAGNRWSGTQYFKKVDEESEDDIFSDPMSRAGKYKRLSKTFLELAIC 121 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 Y P+ + T A +NP+ YLTPGLW+K G SF +FLFETPFAL RGL + + Sbjct: 122 YLPILFLFMYSNTMNLGAFVNPKELYLTPGLWDKQGVSFLWSFLFETPFALMRGLFLTFI 181 Query: 181 PTVIILYLFFFFKANRLYKK 200 P V +Y +KANRLY++ Sbjct: 182 PVVTCMYFVCSYKANRLYEE 201 >C2X826.1 C2X826_BACCE Putative uncharacterized protein Length = 203 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 100/200 (50%), Positives = 139/200 (69%) Query: 1 MRKFKFFLNFDQEEKWLNHMARQGWEFVGKSICYHFQKAEPEDAVIKMDYRPFSRKADFE 60 M + KFFL+F++EEKWL MA +G++ + Y F+ EPEDA IK+D+R FSRK+DF Sbjct: 2 MWRLKFFLDFEKEEKWLEEMAWKGYQLESNTFGYTFRYTEPEDATIKIDHRVFSRKSDFI 61 Query: 61 DYRALFEDSGWKHIQGSKSSGYQYFRKVSGQGSEDIFSDADSKAGRYKRLSKMWLSISVA 120 +Y LFEDSGW+HI G++ SG QYF+KV + +DIFSD S+AG+YKRLSK +L +++ Sbjct: 62 NYCTLFEDSGWEHIAGNRWSGTQYFKKVDEESEDDIFSDPMSRAGKYKRLSKTFLELAIC 121 Query: 121 YFPVCVALGTTGTFKPSALLNPEAFYLTPGLWEKTGSSFWRAFLFETPFALFRGLGIYLL 180 Y P+ + T A +NP+ YLTPGLW+K G+SF +FLFETPFAL RGL + + Sbjct: 122 YLPILFLFMYSNTMNLGAFVNPKELYLTPGLWDKQGASFLWSFLFETPFALMRGLFLIFI 181 Query: 181 PTVIILYLFFFFKANRLYKK 200 P ++ +KANRLY++ Sbjct: 182 PVATCMFFVCSYKANRLYEE 201 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,341,090,423 Number of extensions: 55853952 Number of successful extensions: 155520 Number of sequences better than 1.0e-05: 169 Number of HSP's gapped: 155392 Number of HSP's successfully gapped: 169 Length of query: 208 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 78 Effective length of database: 1,835,964,253 Effective search space: 143205211734 Effective search space used: 143205211734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)