BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0063.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DK55.1 B1DK55_9BACL Pentapeptide repeat protein 273 5e-72 B1D7T6.1 B1D7T6_9BACL Pentapeptide repeat protein 248 3e-64 C2W6Q9.1 C2W6Q9_BACCE Pentapeptide repeat protein 229 9e-59 C3BJ34.1 C3BJ34_9BACI Pentapeptide repeat protein 228 2e-58 C3B286.1 C3B286_BACMY Pentapeptide repeat protein 228 2e-58 >B1DK55.1 B1DK55_9BACL Pentapeptide repeat protein Length = 201 Score = 273 bits (699), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 125/200 (62%), Positives = 160/200 (80%) Query: 1 MYQYNDREFVDVRFDGHDLRYGELIRCTFTNCTFMNTSMEEIDTSHCRFIECDFKGAALN 60 M+QYND+ + V F DLR+GELI CTF C+F S+EE+ + +CRF+ECDF+GA LN Sbjct: 1 MFQYNDQTYTGVNFGAQDLRFGELINCTFVRCSFAGGSLEELSSINCRFVECDFRGAMLN 60 Query: 61 ASIHTESAFENCKFSGANLFVTKFISCKMTGSDFSGAQIDGITLSQGDWSYTNLRYAKLG 120 SIH ESAFENC FSGANLFV KF +CKMTGSDF+ + +DGI++ QGDWSYTNLR+A+L Sbjct: 61 GSIHKESAFENCNFSGANLFVVKFDACKMTGSDFTNSTMDGISIIQGDWSYTNLRHARLV 120 Query: 121 KQDLRGVRFHEADLSESDLTKADLRDCDLTRVSLSKAKLKGADLRGAKLDGMNLKALDVT 180 KQDLRG++FHEADLS ++L KADLRD DL+ L+KAKL+ D+RGAK++G++ K++ V Sbjct: 121 KQDLRGIKFHEADLSGANLEKADLRDSDLSMAVLAKAKLQDTDVRGAKMEGVDFKSISVA 180 Query: 181 GVRMDMEQAVLFLRSYGAKI 200 G+RMD EQ VLF S+GAKI Sbjct: 181 GLRMDREQTVLFAMSHGAKI 200 >B1D7T6.1 B1D7T6_9BACL Pentapeptide repeat protein Length = 201 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 118/201 (58%), Positives = 147/201 (73%) Query: 1 MYQYNDREFVDVRFDGHDLRYGELIRCTFTNCTFMNTSMEEIDTSHCRFIECDFKGAALN 60 M Y D+ F V F G D R EL RCTF C F+ +EE T+ C+F ECDF GAALN Sbjct: 1 MQTYADQLFECVDFSGEDFREAELTRCTFIKCKFIGARLEEAVTTGCKFEECDFHGAALN 60 Query: 61 ASIHTESAFENCKFSGANLFVTKFISCKMTGSDFSGAQIDGITLSQGDWSYTNLRYAKLG 120 AS+HTESAF NC F GANLFV KF +CKMTGSDF+GA++ GIT+ +GDWSYTNLR+ KL Sbjct: 61 ASVHTESAFTNCLFEGANLFVAKFAACKMTGSDFAGAELSGITIVKGDWSYTNLRHVKLD 120 Query: 121 KQDLRGVRFHEADLSESDLTKADLRDCDLTRVSLSKAKLKGADLRGAKLDGMNLKALDVT 180 KQ+LR +RF EADL + L K+DLR CDLTR +L++ L GADLRGA+L+G+ K +++ Sbjct: 121 KQNLRDIRFVEADLMGASLEKSDLRKCDLTRANLTQTNLSGADLRGAELEGVPWKTVNLK 180 Query: 181 GVRMDMEQAVLFLRSYGAKID 201 G RMD QA+ LRS GAK++ Sbjct: 181 GARMDTVQAITLLRSLGAKVE 201 >C2W6Q9.1 C2W6Q9_BACCE Pentapeptide repeat protein Length = 201 Score = 229 bits (585), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 112/201 (55%), Positives = 138/201 (68%) Query: 1 MYQYNDREFVDVRFDGHDLRYGELIRCTFTNCTFMNTSMEEIDTSHCRFIECDFKGAALN 60 M ++ ++E+V+V F ++ EL CTF C F E+ +C FIECDF GA N Sbjct: 1 MSEFINKEYVEVNFQDIVIKEEELKNCTFIKCRFRGVDASEVVAENCNFIECDFTGALFN 60 Query: 61 ASIHTESAFENCKFSGANLFVTKFISCKMTGSDFSGAQIDGITLSQGDWSYTNLRYAKLG 120 ASIH S F NCKFSGANLFV+KF CKMTGSDF A +DGIT+ GDWSYTNLR+A L Sbjct: 61 ASIHQGSTFANCKFSGANLFVSKFEECKMTGSDFEEANLDGITIVSGDWSYTNLRFANLS 120 Query: 121 KQDLRGVRFHEADLSESDLTKADLRDCDLTRVSLSKAKLKGADLRGAKLDGMNLKALDVT 180 KQ L+G+R EADL E +L KADLR+ DLT V L KAKL GADLRGA +D ++ + D+ Sbjct: 121 KQKLKGIRLVEADLYECNLEKADLRNADLTGVQLGKAKLTGADLRGAVVDRIDFRTFDLK 180 Query: 181 GVRMDMEQAVLFLRSYGAKID 201 VR+D+ QAV R YGAK+D Sbjct: 181 NVRLDITQAVAVARCYGAKVD 201 >C3BJ34.1 C3BJ34_9BACI Pentapeptide repeat protein Length = 208 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/201 (56%), Positives = 138/201 (68%) Query: 1 MYQYNDREFVDVRFDGHDLRYGELIRCTFTNCTFMNTSMEEIDTSHCRFIECDFKGAALN 60 M ++ + E++++ F ++ EL CTF C F EI T +C FIECDF GA N Sbjct: 8 MSEFVNNEYIEIDFRDVAIKEEELKNCTFIKCRFRGVDASEIVTENCNFIECDFTGALFN 67 Query: 61 ASIHTESAFENCKFSGANLFVTKFISCKMTGSDFSGAQIDGITLSQGDWSYTNLRYAKLG 120 ASIH S F NCKFSGANLFV+KF CKMTGSDF A +DGIT+ GDWSYTNLR+A L Sbjct: 68 ASIHQGSTFANCKFSGANLFVSKFEECKMTGSDFEEANLDGITIVFGDWSYTNLRFANLS 127 Query: 121 KQDLRGVRFHEADLSESDLTKADLRDCDLTRVSLSKAKLKGADLRGAKLDGMNLKALDVT 180 KQ L+G+R EADL E +L KADLRD DLT L KAKL GADLRGA +D ++ +A D+ Sbjct: 128 KQKLKGIRLVEADLCECNLEKADLRDVDLTGAQLGKAKLIGADLRGAVVDRIDFRAFDLQ 187 Query: 181 GVRMDMEQAVLFLRSYGAKID 201 VR+D+ QAV R YGAK+D Sbjct: 188 NVRLDITQAVAVARCYGAKVD 208 >C3B286.1 C3B286_BACMY Pentapeptide repeat protein Length = 208 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/201 (56%), Positives = 138/201 (68%) Query: 1 MYQYNDREFVDVRFDGHDLRYGELIRCTFTNCTFMNTSMEEIDTSHCRFIECDFKGAALN 60 M ++ + E++++ F ++ EL CTF C F EI T +C FIECDF GA N Sbjct: 8 MSEFVNNEYIEIDFRDVAIKEEELKNCTFIKCRFRGVDASEIVTENCNFIECDFTGALFN 67 Query: 61 ASIHTESAFENCKFSGANLFVTKFISCKMTGSDFSGAQIDGITLSQGDWSYTNLRYAKLG 120 ASIH S F NCKFSGANLFV+KF CKMTGSDF A +DGIT+ GDWSYTNLR+A L Sbjct: 68 ASIHQGSTFANCKFSGANLFVSKFEECKMTGSDFEEANLDGITIVFGDWSYTNLRFANLS 127 Query: 121 KQDLRGVRFHEADLSESDLTKADLRDCDLTRVSLSKAKLKGADLRGAKLDGMNLKALDVT 180 KQ L+G+R EADL E +L KADLRD DLT L KAKL GADLRGA +D ++ +A D+ Sbjct: 128 KQKLKGIRLVEADLCECNLEKADLRDVDLTGAQLGKAKLIGADLRGAVVDRIDFRAFDLQ 187 Query: 181 GVRMDMEQAVLFLRSYGAKID 201 VR+D+ QAV R YGAK+D Sbjct: 188 NVRLDITQAVAVARCYGAKVD 208 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,056,143,036 Number of extensions: 38919622 Number of successful extensions: 138731 Number of sequences better than 1.0e-05: 1382 Number of HSP's gapped: 122145 Number of HSP's successfully gapped: 2600 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)