BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0062.p (339 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D921.1 B1D921_9BACL Putative uncharacterized protein 208 6e-52 A6CKP7.1 A6CKP7_9BACI Putative uncharacterized protein 147 2e-33 B1D922.1 B1D922_9BACL Putative uncharacterized protein 87 2e-15 A6CIV7.1 A6CIV7_9BACI Replicative DNA helicase EC=3.6.1.- 84 2e-14 A6CQI5.1 A6CQI5_9BACI Putative uncharacterized protein 80 4e-13 >B1D921.1 B1D921_9BACL Putative uncharacterized protein Length = 169 Score = 208 bits (530), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 98/169 (57%), Positives = 126/169 (74%) Query: 162 LMEKIVYDNHFNGNEWFVIGVIVLGFAVAWLLPRRYSPAQTIFNLLIGITFGHIIDHSIG 221 +ME IVYD FN NE +VI ++ +GF LLPR SP QT FN+LI +T G + DH+I Sbjct: 1 MMESIVYDQQFNSNELYVISLMTVGFTFYRLLPRTPSPLQTCFNMLISVTLGLMFDHTIA 60 Query: 222 LPPFDFYDVGDQSTYQLFDFFTYLMYSPFGYLFIYGYERLRMFELMTVVYILFWAAVSVG 281 +PPFDFYDVGD+S+Y+ FDF +YLMY+PFGYL+IYG+ER R+ ++T+ YIL WAA+++ Sbjct: 61 IPPFDFYDVGDRSSYEFFDFISYLMYAPFGYLYIYGFERFRISGIITIGYILVWAAIAIL 120 Query: 282 FEWLASKAGVFHYKHGYYTGYSFPIYLFLISIQLILYRMAFARSRWQRN 330 FEWL K GVFHYKHGY YS PIYL ++SIQL R AF+ R Q+N Sbjct: 121 FEWLGVKFGVFHYKHGYCILYSIPIYLVVLSIQLWACRAAFSNHRRQKN 169 >A6CKP7.1 A6CKP7_9BACI Putative uncharacterized protein Length = 174 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 1/173 (0%) Query: 166 IVYDNHFNGNEWFVIGVIVLGFAVAWLLPRRYSPAQTIFNLLIGITFGHIIDHSIGLPPF 225 ++YD+ FN NEWF++ V+ L F + L R + L G+T G DH+I L PF Sbjct: 3 VIYDHQFNVNEWFILIVLALSFVSLFFLKPRMELPLLLTIYLFGVTSGMFFDHTISLNPF 62 Query: 226 DFYDVGDQSTYQLFDFFTYLMYSPFGYLFIYGYERLRMFELMTVVYILFWAAVSVGFEWL 285 +FYDV D S YQL DF +Y+MY PF Y F+Y YE+ ++ + ++Y++ W V++ EW+ Sbjct: 63 NFYDVNDTSNYQLIDFISYVMYGPFAYFFVYFYEKFKITGMKNILYVIIWTVVAICVEWV 122 Query: 286 ASKAGVFHYKHGYYTGYSFPIYLFLISIQLILYRMAFARSRWQRNRREEVKKT 338 A KAG+FHY++GY YS PIYLF +I + + + + Q+ + ++V KT Sbjct: 123 AHKAGIFHYRNGYKLFYSIPIYLFNQTILIGFSNLILSEFK-QKQKIKQVIKT 174 >B1D922.1 B1D922_9BACL Putative uncharacterized protein Length = 157 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 1 LVVIIFLVFAWFCIGVMACXXXXXXXXXXXXXXXXXXXXXXNKLTVLTYNLNLLQINTRS 60 +V++IF+++AWFCI V+ NKLT+ + N+ L QIN ++ Sbjct: 1 MVIVIFILYAWFCIQVLMNLRLKLPLAANLLLFMAIEVVLTNKLTISSLNMKLFQIN-QN 59 Query: 61 IPHYLSMIMHNDITIAFVLLTFANVFLTTSKASIRWGISVY 101 IPH++++I+HND+TI F+LL FANVFL + K S+R GI+VY Sbjct: 60 IPHFIALILHNDLTITFILLAFANVFLMSPKISVRIGITVY 100 >A6CIV7.1 A6CIV7_9BACI Replicative DNA helicase EC=3.6.1.- Length = 169 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 172 FNGNEWFVIGVIVLGFAVAWLLPRRYSPAQTIFNLLIGITFGHIIDHSIGLPPFDFYDVG 231 F+ NEW+++ + + + L+P+R+ T+ +L + +IDH + +PP DFYD+ Sbjct: 14 FDKNEWYILVISTIMVLIFLLIPKRFPSKLTLNLILFNLVLSFVIDHLLAMPPHDFYDIM 73 Query: 232 DQSTYQLFDFFTYLM-YSPFGYLFIYGYERLRMFELMTVVYILFWAAVSVGFEWLASKAG 290 D+ +++LFD Y+ YS FGY +Y Y+ L++ T+V+IL ++ + G E +++ Sbjct: 74 DRPSFELFDLIIYIFAYSFFGYFLLYMYDMLKLNYKRTIVFILTFSIIVTGLEAISTYIF 133 Query: 291 VFHYKHGYYTGYSFPIYLFLISIQLILYR 319 + H + +SF Y+ L + ++ +R Sbjct: 134 EVYKYHEWNLIFSFLSYIILFLLNVLYFR 162 >A6CQI5.1 A6CQI5_9BACI Putative uncharacterized protein Length = 161 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 83/149 (55%) Query: 172 FNGNEWFVIGVIVLGFAVAWLLPRRYSPAQTIFNLLIGITFGHIIDHSIGLPPFDFYDVG 231 F+ NE ++ ++++ ++ ++ P+ T L+ G + D +IG DFY V Sbjct: 7 FDKNEIYISVMLLIAYSAFFIFPKVLPRNITALFLVWGFASSTLFDFTIGGGMLDFYKVN 66 Query: 232 DQSTYQLFDFFTYLMYSPFGYLFIYGYERLRMFELMTVVYILFWAAVSVGFEWLASKAGV 291 D + Y+LFD +Y +++ F Y F+Y YE L++ + V+YI W+ V + E ++S G+ Sbjct: 67 DSNKYELFDLLSYFLFAVFSYFFVYFYEVLKVKGMGFVLYIAGWSLVGLAMEKVSSLMGL 126 Query: 292 FHYKHGYYTGYSFPIYLFLISIQLILYRM 320 HY++GY YS ++L + S + Y++ Sbjct: 127 THYQNGYEIYYSLAVFLVVQSTTALYYQL 155 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,921,729,886 Number of extensions: 79971761 Number of successful extensions: 214124 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 214122 Number of HSP's successfully gapped: 7 Length of query: 339 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 203 Effective length of database: 1,779,438,163 Effective search space: 361225947089 Effective search space used: 361225947089 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)