BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0061.p (264 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PCZ2.1 C1PCZ2_BACCO Putative uncharacterized protein 259 2e-67 Q2BDD4.1 Q2BDD4_9BACI Predicted membrane protein 256 1e-66 A5D1U0.1 A5D1U0_PELTS Predicted membrane protein 248 4e-64 A6TWU8.1 A6TWU8_ALKMQ Membrane protein 239 2e-61 A6CJ75.1 A6CJ75_9BACI Predicted membrane protein 224 4e-57 >C1PCZ2.1 C1PCZ2_BACCO Putative uncharacterized protein Length = 262 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 170/245 (69%) Query: 11 RRYNSYMAIYNNNHIYLRNPWVVAWWSAAFPGFGHLNLGYYLKGFMLIVWEIVINNGAGI 70 RRY ++++I ++LRNP+++AWWSAAFPGFGHL L Y++G+ L +WE+V+N A + Sbjct: 11 RRYKAHVSILGTTQLHLRNPYIIAWWSAAFPGFGHLLLSKYIRGYALFIWEVVVNLKANV 70 Query: 71 NKAMVYSFNGRFDIAKGVLNPRWLLLYIPVYIYCIWDSYRKTADLNKHCLLAEREAAPIT 130 N +M+YSF G D+AK VL+ RWLL+YIPVY++ IWDSYR T D+NK LLAERE Sbjct: 71 NLSMIYSFQGNIDMAKAVLDTRWLLMYIPVYLFGIWDSYRTTVDMNKIYLLAEREEHRFN 130 Query: 131 LFKMNGVSLNMLDKRLPEVALVWSLLFPGLGHLYLQKLLSGSFLFVCCIFISYYSHLVEA 190 F + + +N LDKR P ++++WSL PGLG LY+ ++L+ F+ V + Y SH EA Sbjct: 131 SFSLGALEINYLDKRNPLLSVMWSLFVPGLGQLYIHRVLTAIFVIVWLVVFYYQSHFQEA 190 Query: 191 CIYMINGSFGQAQAVLDPEWICYYPSMFCFAAYESYKIAVQHNKLYEQEQLRFLREHVQP 250 I + G +A +V++PEW+ + PS F FAAY+SY V++NKL+++E ++L H QP Sbjct: 191 VILLFWGKIKEATSVINPEWLLFIPSHFGFAAYDSYMNTVENNKLFDKELRQYLTRHYQP 250 Query: 251 RSYKL 255 +++ Sbjct: 251 DGFRI 255 >Q2BDD4.1 Q2BDD4_9BACI Predicted membrane protein Length = 262 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 116/253 (45%), Positives = 171/253 (67%) Query: 5 TEAKHIRRYNSYMAIYNNNHIYLRNPWVVAWWSAAFPGFGHLNLGYYLKGFMLIVWEIVI 64 T RRY ++++I I+LRNP+++AWWSAAFPGFGHL L YL+GF+L +WE+V+ Sbjct: 5 TNDNTARRYRAHVSILGTTQIHLRNPYIIAWWSAAFPGFGHLLLSKYLRGFVLFIWEVVV 64 Query: 65 NNGAGINKAMVYSFNGRFDIAKGVLNPRWLLLYIPVYIYCIWDSYRKTADLNKHCLLAER 124 N + +N AMVYSF G + AK +L RWLL+YIPVYI+ IWDSYR T DLN+ +LAER Sbjct: 65 NIKSKLNLAMVYSFQGEIERAKEILEVRWLLIYIPVYIFAIWDSYRTTVDLNQIHVLAER 124 Query: 125 EAAPITLFKMNGVSLNMLDKRLPEVALVWSLLFPGLGHLYLQKLLSGSFLFVCCIFISYY 184 E F M + +N LDKR P +A++WS PGLG LY+ +++S F + + YY Sbjct: 125 EEHQFNSFSMGALEINYLDKRNPVMAVMWSFFVPGLGQLYIHRIVSAFFTIIWAVVFFYY 184 Query: 185 SHLVEACIYMINGSFGQAQAVLDPEWICYYPSMFCFAAYESYKIAVQHNKLYEQEQLRFL 244 SH +EA Y+ G ++ AV+ EW+ ++PS++ F+ Y+SY V++NKL+ +EQ + Sbjct: 185 SHGLEALSYLFMGDIEKSTAVIHAEWLLFFPSLYGFSLYDSYINTVENNKLFNKEQRAYF 244 Query: 245 REHVQPRSYKLLE 257 R++ Q S+++L+ Sbjct: 245 RKNYQSSSFRILK 257 >A5D1U0.1 A5D1U0_PELTS Predicted membrane protein Length = 255 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 116/245 (47%), Positives = 162/245 (66%) Query: 11 RRYNSYMAIYNNNHIYLRNPWVVAWWSAAFPGFGHLNLGYYLKGFMLIVWEIVINNGAGI 70 RR + ++ ++ N ++LRNPWV AWWSAAFPGFGH+ +G Y+KG++ +WE +N + + Sbjct: 9 RRQKAAISAFSINALHLRNPWVAAWWSAAFPGFGHMFIGNYIKGYIFTIWEFYVNINSNL 68 Query: 71 NKAMVYSFNGRFDIAKGVLNPRWLLLYIPVYIYCIWDSYRKTADLNKHCLLAEREAAPIT 130 N A++YSF G FD AK VL+ RWLLLY VY+Y IWDSYR T DLNK LA++ I+ Sbjct: 69 NTAIIYSFTGHFDKAKAVLDTRWLLLYTAVYVYAIWDSYRSTVDLNKLAALADKNHPHIS 128 Query: 131 LFKMNGVSLNMLDKRLPEVALVWSLLFPGLGHLYLQKLLSGSFLFVCCIFISYYSHLVEA 190 F +N +N LDKR P VA VWS PGLG LY + ++G + I +Y+SH+ +A Sbjct: 129 PFAINSFEINYLDKRNPWVAAVWSAFTPGLGTLYSLRTITGFYALSLWIITAYFSHIFQA 188 Query: 191 CIYMINGSFGQAQAVLDPEWICYYPSMFCFAAYESYKIAVQHNKLYEQEQLRFLREHVQP 250 Y G+F QA A DPEW+ + PS++C+ Y SY V++NKL++ EQ RFL+E Q Sbjct: 189 IYYTAIGAFEQAAAAADPEWLLFMPSIYCYGIYGSYVHTVEYNKLFKLEQSRFLKESYQN 248 Query: 251 RSYKL 255 R + + Sbjct: 249 RDFDM 253 >A6TWU8.1 A6TWU8_ALKMQ Membrane protein Length = 421 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 114/262 (43%), Positives = 169/262 (64%) Query: 1 VEHKTEAKHIRRYNSYMAIYNNNHIYLRNPWVVAWWSAAFPGFGHLNLGYYLKGFMLIVW 60 + ++++ RR + ++I ++LRNP +VAWWSAAFPGFGHL L YL+GF+LI W Sbjct: 1 MTNQSQKMTSRRQIANVSILGTTQLHLRNPRIVAWWSAAFPGFGHLLLSKYLRGFLLITW 60 Query: 61 EIVINNGAGINKAMVYSFNGRFDIAKGVLNPRWLLLYIPVYIYCIWDSYRKTADLNKHCL 120 E+V+N A +N A+ YSF G D AK VLN W+LLYIP+YI+ IWDSYR D+N + Sbjct: 61 EVVVNLNANLNMAIFYSFIGEVDKAKEVLNKEWMLLYIPLYIFAIWDSYRTAVDMNNNYK 120 Query: 121 LAEREAAPITLFKMNGVSLNMLDKRLPEVALVWSLLFPGLGHLYLQKLLSGSFLFVCCIF 180 LA RE A I F ++ + +N LDKR P A +WS L PG G LY+ ++++G+F+ + I Sbjct: 121 LAAREDAEIKAFNISALEINHLDKRSPLNAFIWSALMPGAGQLYIHRIVTGAFILIWWIA 180 Query: 181 ISYYSHLVEACIYMINGSFGQAQAVLDPEWICYYPSMFCFAAYESYKIAVQHNKLYEQEQ 240 + S L+ A Y + G +A+AVLD +W PS++ F+ Y++Y V++NKLY+ EQ Sbjct: 181 VICCSKLLPAIHYSLLGQIQEAKAVLDIQWTLNIPSIYGFSVYDAYVNTVENNKLYDWEQ 240 Query: 241 LRFLREHVQPRSYKLLESTGNE 262 +FL+ Q ++K+ G + Sbjct: 241 SKFLKRQYQDEAFKMPMKDGRQ 262 >A6CJ75.1 A6CJ75_9BACI Predicted membrane protein Length = 263 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 158/248 (63%) Query: 15 SYMAIYNNNHIYLRNPWVVAWWSAAFPGFGHLNLGYYLKGFMLIVWEIVINNGAGINKAM 74 ++++I+ ++LRNP+ +A+WS AFPG+GHL L YL+GF L++WEI IN +N AM Sbjct: 16 AHLSIFGTTQVHLRNPYTIAFWSIAFPGYGHLLLSKYLRGFSLVIWEIFINQLTHLNLAM 75 Query: 75 VYSFNGRFDIAKGVLNPRWLLLYIPVYIYCIWDSYRKTADLNKHCLLAEREAAPITLFKM 134 ++SF G D AK VL+ R++ LYIPVY++ I DSYR T DLNK L+ E ++ + + Sbjct: 76 IHSFTGNIDAAKDVLDVRYMHLYIPVYLFAILDSYRSTVDLNKIYLINENKSPSVKKLII 135 Query: 135 NGVSLNMLDKRLPEVALVWSLLFPGLGHLYLQKLLSGSFLFVCCIFISYYSHLVEACIYM 194 +N LDKR P +A S+ P +G LY ++ F + + YYSH++E Y+ Sbjct: 136 RPFEINYLDKRNPMIAFFSSMTIPSVGQLYTHRIFGAIFTLISTVIYVYYSHVLEGVHYL 195 Query: 195 INGSFGQAQAVLDPEWICYYPSMFCFAAYESYKIAVQHNKLYEQEQLRFLREHVQPRSYK 254 + G ++ +VLDP+W+ Y PS + F Y+SY AV++NKL++ EQ ++L+ + QP+ +K Sbjct: 196 LIGDIEKSTSVLDPQWLLYIPSFYFFTIYDSYMNAVENNKLFDSEQKQYLKRNYQPKDFK 255 Query: 255 LLESTGNE 262 + + E Sbjct: 256 IKKGVKVE 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,690,261,798 Number of extensions: 71516860 Number of successful extensions: 195795 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 195764 Number of HSP's successfully gapped: 37 Length of query: 264 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 131 Effective length of database: 1,807,701,208 Effective search space: 236808858248 Effective search space used: 236808858248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)