BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0060.p (139 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5D1U1.1 A5D1U1_PELTS Hypothetical membrane protein 100 6e-20 A6TWU8.1 A6TWU8_ALKMQ Membrane protein 95 2e-18 Q97FX5.1 Q97FX5_CLOAB Predicted membrane protein 93 7e-18 A6CJ76.1 A6CJ76_9BACI Predicted membrane protein 85 2e-15 Q2BDD5.1 Q2BDD5_9BACI Predicted membrane protein 84 5e-15 >A5D1U1.1 A5D1U1_PELTS Hypothetical membrane protein Length = 159 Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 2/141 (1%) Query: 1 VYVELAILALEQDGFGRESIAAVPMEPITRSISLSESICRAEGVSVIDMAAILGTIFAVL 60 +++ELAI ALEQ G +E I AVP+E ++I R++G+S+ D AA LGT F L Sbjct: 19 LFLELAITALEQKGIAKEKILAVPLEQKVEKRKFFDTIHRSDGISLFDGAAALGTAFMAL 78 Query: 61 GASFGFELRWGPIPWGLIGLALGVCASLILFLIAGKGL--KPTAAGTKAVVMLIILCEQG 118 G +GF +WGPI WGLIGL GV +L GK K V+LII C + Sbjct: 79 GVIYGFVWKWGPIIWGLIGLLCGVFLGFLLDFFTGKERRNKKKVKNIATEVILIINCSEN 138 Query: 119 DSHKAIEILKQFSAISIGKLD 139 ++L A+ +GK+D Sbjct: 139 QGEMVEKVLWDHFALGVGKID 159 >A6TWU8.1 A6TWU8_ALKMQ Membrane protein Length = 421 Score = 95.1 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 2/140 (1%) Query: 2 YVELAILALEQDGFGRESIAAVPMEPITRSISLSESICRAEGVSVIDMAAILGTIFAVLG 61 Y+ELAI A+E G +E I +P++ S L ++I ++G+S++D+ A LGTIF +LG Sbjct: 278 YLELAITAMEMKGIKKEKILGIPLDKRGESRRLFDTIHYSDGLSLLDLGAALGTIFMLLG 337 Query: 62 ASFGFELRWGPIPWGLIGLALGVCASLILFLIAGKGLKP--TAAGTKAVVMLIILCEQGD 119 + +GF L+WGPI W LIGL G + LI K + + G + V+LII C Q + Sbjct: 338 SIYGFVLKWGPIWWALIGLGFGFTLGCAIKLITTKKYEKHRSHKGQASEVVLIIECHQEE 397 Query: 120 SHKAIEILKQFSAISIGKLD 139 L + A+ + +LD Sbjct: 398 MEMTKSTLWENHALGVSQLD 417 >Q97FX5.1 Q97FX5_CLOAB Predicted membrane protein Length = 418 Score = 93.2 bits (230), Expect = 7e-18, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%) Query: 1 VYVELAILALEQDGFGRESIAAVPMEPITRSISLSESICRAEGVSVIDMAAILGTIFAVL 60 VY+ELAI A+E G +E I ++PM+ L +SI ++G+S+ D+ +IL I + Sbjct: 277 VYLELAITAIEMKGIKKERIMSIPMDKKGEERMLFDSIQSSDGLSLFDLPSILAVIGGIF 336 Query: 61 GASFGFELRWGPIPWGLIGLALGVCASLILFLIAGKGLK-PTAAGTKAVVMLIILCEQGD 119 G+ +GF L+WGPI WGLIG+ C ++ LI + + ++ V+LII C+ Sbjct: 337 GSIYGFVLKWGPILWGLIGIVSCSCVGFVIKLIVTRKYRDEQKCSERSEVVLIIECDDSK 396 Query: 120 SHKAIEILKQFSAISIGKLD 139 +IL + +A+ + KLD Sbjct: 397 VEMVKDILWKNNALGVRKLD 416 >A6CJ76.1 A6CJ76_9BACI Predicted membrane protein Length = 150 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 2 YVELAILALEQDGFGRESIAAVPMEPITRSISLSESICRAEGVSVIDMAAILGTIFAVLG 61 Y+E+AI LEQ G I AVP++ T L +S+ R++G+S+I+ +FAV+G Sbjct: 12 YLEIAISKLEQRGI--TDIFAVPLDNRTEMPRLFDSLHRSDGISLINKGMFFAVLFAVIG 69 Query: 62 ASFGFELRWGPIPWGLI----GLALGVCASLILFLIAGKGLKPTAAGTKAVVMLIILCEQ 117 AS GF L WGPI WGLI G LG LI I K K G + V++II C + Sbjct: 70 ASRGFILEWGPIYWGLIGAGSGFLLGFIIDLIQVFIKRKKTK-LLKGKSSEVIMIINCSE 128 Query: 118 GDSHKAIEILKQFSAISIGKL 138 DS + ++IL ++ + K+ Sbjct: 129 EDSDEVVKILWDNLSLGVAKV 149 >Q2BDD5.1 Q2BDD5_9BACI Predicted membrane protein Length = 152 Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 5/140 (3%) Query: 3 VELAILALEQDGFGRESIAAVPMEPITRSISLSESICRAEGVSVIDMAAILGTIFAVLGA 62 +E+A+ LE+ G RE I VP++ L + + R++G S+ID+ A L T F+V+GA Sbjct: 13 LEMAVSTLEKKGIKREKIYIVPLDNRQEKHKLFDGLNRSDGTSLIDIGAALATAFSVVGA 72 Query: 63 SFGFELRWGPIPWGLI----GLALGVCASLILFLIAGKGLKPTAAGTKAVVMLIILCEQG 118 S GF+L WGPI WGLI G +GV L I K + G + V+LI+ CE Sbjct: 73 SIGFKLAWGPIYWGLITAAAGFLIGVGIRLFTEAIVKKK-RRQLKGVHSEVILIVECEDA 131 Query: 119 DSHKAIEILKQFSAISIGKL 138 + IL A+ + K+ Sbjct: 132 EGELVENILFGHYALGVAKV 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 737,202,159 Number of extensions: 27238424 Number of successful extensions: 122979 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 122975 Number of HSP's successfully gapped: 11 Length of query: 139 Length of database: 3,060,696,203 Length adjustment: 103 Effective length of query: 36 Effective length of database: 2,090,331,658 Effective search space: 75251939688 Effective search space used: 75251939688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 125 (52.8 bits)