BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0059.p (502 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBA4.1 B1DBA4_9BACL GerA spore germination protein 743 0.0 B7HWS3.1 B7HWS3_BACC7 Spore germination protein KA 671 0.0 C2S5L2.1 C2S5L2_BACCE GerA spore germination protein 671 0.0 B5V2B6.1 B5V2B6_BACCE Spore germination protein KA 670 0.0 B9IRC7.1 B9IRC7_BACCQ Germination response to the combination of... 670 0.0 >B1DBA4.1 B1DBA4_9BACL GerA spore germination protein Length = 522 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/497 (71%), Positives = 425/497 (85%), Gaps = 7/497 (1%) Query: 5 EWSTDLAMNEQTLREIFQDCSDIVFRTFNVDPRVLLVYIDGLTDTQNLEKVVLQPILSDK 64 E ST L++NE+ +RE FQ CSDI+FR+ + +P +L+VY DGL D + L+ +VL P+L ++ Sbjct: 32 ELSTKLSINEKMVREAFQQCSDIIFRSISSNPEILIVYADGLIDNKTLDNMVLAPLLYEE 91 Query: 65 NTDGLNHAYTPGEIIEQQLVAIAKVQTVSALHEVTDGILKANIAILVEGEKQVLLAGLKK 124 A G++I+ +L+A+++++TVS L E+TDGILKANI +L +GE + L A LK Sbjct: 92 -------APISGQMIQDKLIAVSQIKTVSTLGEITDGILKANIVLLADGENKALAADLKG 144 Query: 125 SEKRGIEEPEAEVSVRGPRDGFTETLRTNTSLIRRRIRSVELKMESVTVGQFSQTEVVIA 184 EKR IEEP AE+SVRGPRDGFTETLRTNTSLIRRRIRS +LKMESVT+G+ SQT+VVI Sbjct: 145 FEKRSIEEPAAEISVRGPRDGFTETLRTNTSLIRRRIRSPQLKMESVTIGEVSQTDVVIV 204 Query: 185 YIHGVASDTVLEEVRNRIRQIEIDGVMESDFIEEFIEDVPWSPFPQIQNTERPDVVSAGL 244 YI G+ S+T+L+EVR+RI +I +DGV+ES FIEEFIED PWSPFPQIQNTERPD+V A L Sbjct: 205 YIDGIVSNTILKEVRSRIDRIVMDGVLESGFIEEFIEDAPWSPFPQIQNTERPDIVCASL 264 Query: 245 LEGKIAIMVDNTPFVLIVPMNFWTGLQAAEDYYERSIYNTFIRLIRYSLVNMSLLLPSLY 304 LEGK+A++VDNTPFVLI PM FWTGLQA EDYYERSIY TFIR +RYSL N++LLLPSLY Sbjct: 265 LEGKVAVIVDNTPFVLIAPMTFWTGLQAVEDYYERSIYTTFIRFVRYSLFNIALLLPSLY 324 Query: 305 VALSTFHQQLIPTNLLISIADSREGVPFPTFVETLLMEFMFEGLREAGIRLPKAIGSAVS 364 VALSTFHQQLIPTNLLISIA+SREGVPFPTFVE LLMEFMFEGLREAGIR+PKA+GSAVS Sbjct: 325 VALSTFHQQLIPTNLLISIANSREGVPFPTFVEALLMEFMFEGLREAGIRMPKAVGSAVS 384 Query: 365 IVGALVIGQAAVQAGIVSAPVVIVLAVTGISSFAIPRYNFGTAYRMLRFPMLILAGVLGL 424 IVGALVIGQAAVQAGIVSAPVVIV+A TGI+SFAIPRYNFGTAYR+LRFPMLILAG+LGL Sbjct: 385 IVGALVIGQAAVQAGIVSAPVVIVVATTGIASFAIPRYNFGTAYRLLRFPMLILAGMLGL 444 Query: 425 YGVICGLFIMIIHLLGLNSFGVPYMSPVAPQALRGLKDVFVRAPRWSMNVRPAYLSGANR 484 YG+I GLF+++IHLLGL SFGVPY+SPV P+ + L+DVF+RAPRWSM RPA ++GAN+ Sbjct: 445 YGIISGLFLLMIHLLGLRSFGVPYLSPVIPKLPQSLRDVFIRAPRWSMTRRPALIAGANK 504 Query: 485 RRIPKGQQPNPNRKRGD 501 RIPKGQQP+ R D Sbjct: 505 TRIPKGQQPSSKRGNED 521 >B7HWS3.1 B7HWS3_BACC7 Spore germination protein KA Length = 530 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/496 (66%), Positives = 403/496 (81%), Gaps = 2/496 (0%) Query: 4 TEWSTDLAMNEQTLREIFQDCSDIVFRTF--NVDPRVLLVYIDGLTDTQNLEKVVLQPIL 61 E + NE+ LR++F++CSDIVFR N +L +YIDGLTDT+ +E+VV +P++ Sbjct: 30 CELKQSVCANEEVLRQVFENCSDIVFRPLLINSQIEILFIYIDGLTDTKIVEQVVFKPMM 89 Query: 62 SDKNTDGLNHAYTPGEIIEQQLVAIAKVQTVSALHEVTDGILKANIAILVEGEKQVLLAG 121 + G+ + GEII++QLVA+++V+T+S +HEV + ILKANI IL EGE Q L+A Sbjct: 90 FEGLPSGVKSEDSVGEIIQKQLVAVSQVKTISKVHEVIEAILKANIVILTEGESQALVAD 149 Query: 122 LKKSEKRGIEEPEAEVSVRGPRDGFTETLRTNTSLIRRRIRSVELKMESVTVGQFSQTEV 181 LK EKRGIEEP AE+SVRGPRDGFTETLR NTSLIRRRIRS LKME ++G+ SQT+V Sbjct: 150 LKGFEKRGIEEPAAEISVRGPRDGFTETLRVNTSLIRRRIRSQRLKMEPYSIGELSQTDV 209 Query: 182 VIAYIHGVASDTVLEEVRNRIRQIEIDGVMESDFIEEFIEDVPWSPFPQIQNTERPDVVS 241 VIAYI G+A D+VL+EVR R+++I+IDGV+ES FIEEFIED P+SPFPQIQNTERPD V Sbjct: 210 VIAYIEGIAPDSVLDEVRQRVKRIQIDGVLESAFIEEFIEDQPFSPFPQIQNTERPDAVC 269 Query: 242 AGLLEGKIAIMVDNTPFVLIVPMNFWTGLQAAEDYYERSIYNTFIRLIRYSLVNMSLLLP 301 A LLEGK+AI+VDNTPFVLIVPM FWTGLQAAEDYYERSIY TF+R IR L+N+SL LP Sbjct: 270 ASLLEGKVAILVDNTPFVLIVPMTFWTGLQAAEDYYERSIYTTFVRWIRLILINISLFLP 329 Query: 302 SLYVALSTFHQQLIPTNLLISIADSREGVPFPTFVETLLMEFMFEGLREAGIRLPKAIGS 361 SLYVA++TFH +LIPTNLLISIA +REG+PFP +E L+MEF+FEGLREAG+RLPK +GS Sbjct: 330 SLYVAITTFHPKLIPTNLLISIAAAREGIPFPAVIEALMMEFLFEGLREAGVRLPKPVGS 389 Query: 362 AVSIVGALVIGQAAVQAGIVSAPVVIVLAVTGISSFAIPRYNFGTAYRMLRFPMLILAGV 421 AVSIVGALVIGQAAVQAGI+SAP+VIV+A TGI+SFA PRYN GTAYRMLRFPML+LAG+ Sbjct: 390 AVSIVGALVIGQAAVQAGIISAPLVIVVATTGIASFAFPRYNLGTAYRMLRFPMLLLAGM 449 Query: 422 LGLYGVICGLFIMIIHLLGLNSFGVPYMSPVAPQALRGLKDVFVRAPRWSMNVRPAYLSG 481 LGLYG+ ++IHL + SFG+PY+SPVAPQ R LKDVF+R PRW+M RP +SG Sbjct: 450 LGLYGIAISTLAILIHLTNIRSFGIPYLSPVAPQTPRDLKDVFLRTPRWNMTHRPIMVSG 509 Query: 482 ANRRRIPKGQQPNPNR 497 + R P GQ+P+ R Sbjct: 510 EEKVRFPDGQKPDEKR 525 >C2S5L2.1 C2S5L2_BACCE GerA spore germination protein Length = 530 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/496 (66%), Positives = 403/496 (81%), Gaps = 2/496 (0%) Query: 4 TEWSTDLAMNEQTLREIFQDCSDIVFRTF--NVDPRVLLVYIDGLTDTQNLEKVVLQPIL 61 E + NE+ LR++F++CSDIVFR N +L +YIDGLTDT+ +E+VV +P++ Sbjct: 30 CELKQSVCANEEVLRQVFENCSDIVFRPLLINSQIEILFIYIDGLTDTKIVEQVVFKPMM 89 Query: 62 SDKNTDGLNHAYTPGEIIEQQLVAIAKVQTVSALHEVTDGILKANIAILVEGEKQVLLAG 121 + G+ + GEII++QLVA+++V+T+S +HEV + ILKANI IL EGE Q L+A Sbjct: 90 FEGLPSGVKSEDSVGEIIQKQLVAVSQVKTISKVHEVIEAILKANIVILTEGESQALVAD 149 Query: 122 LKKSEKRGIEEPEAEVSVRGPRDGFTETLRTNTSLIRRRIRSVELKMESVTVGQFSQTEV 181 LK EKRGIEEP AE+SVRGPRDGFTETLR NTSLIRRRIRS LKME ++G+ SQT+V Sbjct: 150 LKGFEKRGIEEPAAEISVRGPRDGFTETLRVNTSLIRRRIRSQRLKMEPYSIGELSQTDV 209 Query: 182 VIAYIHGVASDTVLEEVRNRIRQIEIDGVMESDFIEEFIEDVPWSPFPQIQNTERPDVVS 241 VIAYI G+A D+VL+EVR R+++I+IDGV+ES FIEEFIED P+SPFPQIQNTERPD V Sbjct: 210 VIAYIEGIAPDSVLDEVRQRVKRIQIDGVLESAFIEEFIEDQPFSPFPQIQNTERPDAVC 269 Query: 242 AGLLEGKIAIMVDNTPFVLIVPMNFWTGLQAAEDYYERSIYNTFIRLIRYSLVNMSLLLP 301 A LLEGK+AI+VDNTPFVLIVPM FWTGLQAAEDYYERSIY TF+R IR L+N+SL LP Sbjct: 270 ASLLEGKVAILVDNTPFVLIVPMTFWTGLQAAEDYYERSIYTTFVRWIRLILINISLFLP 329 Query: 302 SLYVALSTFHQQLIPTNLLISIADSREGVPFPTFVETLLMEFMFEGLREAGIRLPKAIGS 361 SLYVA++TFH +LIPTNLLISIA +REG+PFP +E L+MEF+FEGLREAG+RLPK +GS Sbjct: 330 SLYVAITTFHPKLIPTNLLISIAAAREGIPFPAVIEALMMEFLFEGLREAGVRLPKPVGS 389 Query: 362 AVSIVGALVIGQAAVQAGIVSAPVVIVLAVTGISSFAIPRYNFGTAYRMLRFPMLILAGV 421 AVSIVGALVIGQAAVQAGI+SAP+VIV+A TGI+SFA PRYN GTAYRMLRFPML+LAG+ Sbjct: 390 AVSIVGALVIGQAAVQAGIISAPLVIVVATTGIASFAFPRYNLGTAYRMLRFPMLLLAGM 449 Query: 422 LGLYGVICGLFIMIIHLLGLNSFGVPYMSPVAPQALRGLKDVFVRAPRWSMNVRPAYLSG 481 LGLYG+ ++IHL + SFG+PY+SPVAPQ R LKDVF+R PRW+M RP +SG Sbjct: 450 LGLYGIAISTLAILIHLTNIRSFGIPYLSPVAPQTPRDLKDVFLRTPRWNMTHRPIMVSG 509 Query: 482 ANRRRIPKGQQPNPNR 497 + R P GQ+P+ R Sbjct: 510 EEKVRFPDGQKPDEKR 525 >B5V2B6.1 B5V2B6_BACCE Spore germination protein KA Length = 530 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/499 (65%), Positives = 403/499 (80%), Gaps = 2/499 (0%) Query: 4 TEWSTDLAMNEQTLREIFQDCSDIVFRTF--NVDPRVLLVYIDGLTDTQNLEKVVLQPIL 61 E + NE+ LR++F++CSDIVFR N +L +YIDGL DT+ +E+VV +P++ Sbjct: 30 CELKQSVCANEEVLRQVFENCSDIVFRPLLINSQIEILFIYIDGLADTKIVEQVVFKPMM 89 Query: 62 SDKNTDGLNHAYTPGEIIEQQLVAIAKVQTVSALHEVTDGILKANIAILVEGEKQVLLAG 121 + G+ + GEII++QLVA+++V+T+S +HEV + ILKANI IL EGE Q L+A Sbjct: 90 FEGLPSGVKSEDSVGEIIQKQLVAVSQVKTISKVHEVIEAILKANIVILTEGESQALVAD 149 Query: 122 LKKSEKRGIEEPEAEVSVRGPRDGFTETLRTNTSLIRRRIRSVELKMESVTVGQFSQTEV 181 LK EKRGIEEP AE+SVRGPRDGFTETLR NTSLIRRRIRS LKME ++G+ SQT+V Sbjct: 150 LKGFEKRGIEEPAAEISVRGPRDGFTETLRVNTSLIRRRIRSQRLKMEPYSIGELSQTDV 209 Query: 182 VIAYIHGVASDTVLEEVRNRIRQIEIDGVMESDFIEEFIEDVPWSPFPQIQNTERPDVVS 241 VIAYI G+A D+VL+EVR R+++I+IDGV+ES FIEEFIED P+SPFPQIQNTERPD V Sbjct: 210 VIAYIEGIAPDSVLDEVRQRVKRIQIDGVLESAFIEEFIEDQPFSPFPQIQNTERPDAVC 269 Query: 242 AGLLEGKIAIMVDNTPFVLIVPMNFWTGLQAAEDYYERSIYNTFIRLIRYSLVNMSLLLP 301 A LLEGK+AI+VDNTPFVLIVPM FWTGLQAAEDYYERSIY TF+R IR L+N+SL LP Sbjct: 270 ASLLEGKVAILVDNTPFVLIVPMTFWTGLQAAEDYYERSIYTTFVRWIRLILINISLFLP 329 Query: 302 SLYVALSTFHQQLIPTNLLISIADSREGVPFPTFVETLLMEFMFEGLREAGIRLPKAIGS 361 SLYVA++TFH +LIPTNLLISIA +REG+PFP +E L+MEF+FEGLREAG+RLPK +GS Sbjct: 330 SLYVAITTFHPKLIPTNLLISIAAAREGIPFPAVIEALMMEFLFEGLREAGVRLPKPVGS 389 Query: 362 AVSIVGALVIGQAAVQAGIVSAPVVIVLAVTGISSFAIPRYNFGTAYRMLRFPMLILAGV 421 AVSIVGALVIGQAAVQAGI+SAP+VIV+A TGI+SFA PRYN GTAYRMLRFPML+LAG+ Sbjct: 390 AVSIVGALVIGQAAVQAGIISAPLVIVVATTGIASFAFPRYNLGTAYRMLRFPMLLLAGM 449 Query: 422 LGLYGVICGLFIMIIHLLGLNSFGVPYMSPVAPQALRGLKDVFVRAPRWSMNVRPAYLSG 481 LGLYG+ ++IHL + SFG+PY+SPVAPQ R LKDVF+R PRW+M RP +SG Sbjct: 450 LGLYGIAISTLAILIHLTNIRSFGIPYLSPVAPQTPRDLKDVFLRTPRWNMTHRPIMVSG 509 Query: 482 ANRRRIPKGQQPNPNRKRG 500 + R P GQ+P+ R G Sbjct: 510 EEKVRFPDGQKPDEKRGGG 528 >B9IRC7.1 B9IRC7_BACCQ Germination response to the combination of glucose, fructose, L-asparagine, and KCl Length = 529 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/499 (65%), Positives = 403/499 (80%), Gaps = 2/499 (0%) Query: 4 TEWSTDLAMNEQTLREIFQDCSDIVFRTF--NVDPRVLLVYIDGLTDTQNLEKVVLQPIL 61 E + NE+ LR++F++CSDIVFR N +L +YIDGL DT+ +E+VV +P++ Sbjct: 29 CELKQSVCANEEVLRQVFENCSDIVFRPLLINSQTEILFIYIDGLVDTKIVEQVVFKPMM 88 Query: 62 SDKNTDGLNHAYTPGEIIEQQLVAIAKVQTVSALHEVTDGILKANIAILVEGEKQVLLAG 121 + G+ + GEII++QL+A+++V+T+S +HEV + ILKANI IL EGE Q L+A Sbjct: 89 FEGLPSGVKSEDSVGEIIQKQLIAVSQVKTISKVHEVIEAILKANIVILTEGESQALVAD 148 Query: 122 LKKSEKRGIEEPEAEVSVRGPRDGFTETLRTNTSLIRRRIRSVELKMESVTVGQFSQTEV 181 LK EKRGIEEP AE+SVRGPRDGFTETLR NTSLIRRRIRS LKME ++G+ SQT+V Sbjct: 149 LKGFEKRGIEEPAAEISVRGPRDGFTETLRVNTSLIRRRIRSQRLKMEPYSIGELSQTDV 208 Query: 182 VIAYIHGVASDTVLEEVRNRIRQIEIDGVMESDFIEEFIEDVPWSPFPQIQNTERPDVVS 241 VIAYI G+A D+VL+EVR R+++I+IDGV+ES FIEEFIED P+SPFPQIQNTERPD V Sbjct: 209 VIAYIEGIAPDSVLDEVRQRVKRIQIDGVLESAFIEEFIEDQPFSPFPQIQNTERPDAVC 268 Query: 242 AGLLEGKIAIMVDNTPFVLIVPMNFWTGLQAAEDYYERSIYNTFIRLIRYSLVNMSLLLP 301 A LLEGK+AI+VDNTPFVLIVPM FWTGLQAAEDYYERSIY TF+R IR L+N+SL LP Sbjct: 269 ASLLEGKVAILVDNTPFVLIVPMTFWTGLQAAEDYYERSIYTTFVRWIRLILINISLFLP 328 Query: 302 SLYVALSTFHQQLIPTNLLISIADSREGVPFPTFVETLLMEFMFEGLREAGIRLPKAIGS 361 SLYVA++TFH +LIPTNLLISIA +REG+PFP +E L+MEF+FEGLREAG+RLPK +GS Sbjct: 329 SLYVAITTFHPKLIPTNLLISIAAAREGIPFPAVIEALMMEFLFEGLREAGVRLPKPVGS 388 Query: 362 AVSIVGALVIGQAAVQAGIVSAPVVIVLAVTGISSFAIPRYNFGTAYRMLRFPMLILAGV 421 AVSIVGALVIGQAAVQAGI+SAP+VIV+A TGI+SFA PRYN GTAYRMLRFPML+LAG+ Sbjct: 389 AVSIVGALVIGQAAVQAGIISAPLVIVVATTGIASFAFPRYNLGTAYRMLRFPMLLLAGM 448 Query: 422 LGLYGVICGLFIMIIHLLGLNSFGVPYMSPVAPQALRGLKDVFVRAPRWSMNVRPAYLSG 481 LGLYG+ ++IHL + SFG+PY+SPVAPQ R LKDVF+R PRW+M RP +SG Sbjct: 449 LGLYGIAISTLAILIHLTNIRSFGIPYLSPVAPQTPRDLKDVFLRTPRWNMTHRPIMVSG 508 Query: 482 ANRRRIPKGQQPNPNRKRG 500 + R P GQ+P+ R G Sbjct: 509 EEKVRFPDGQKPDEKRGGG 527 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,806,406,156 Number of extensions: 115361039 Number of successful extensions: 352412 Number of sequences better than 1.0e-05: 1096 Number of HSP's gapped: 350909 Number of HSP's successfully gapped: 1098 Length of query: 502 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 362 Effective length of database: 1,741,754,103 Effective search space: 630514985286 Effective search space used: 630514985286 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)