BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0052.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IP98.1 A4IP98_GEOTN L-arabinose transport system (Permease) 321 5e-86 B4BMB7.1 B4BMB7_9BACI Monosaccharide-transporting ATPase EC=3.6.... 321 5e-86 A7Z7G1.1 A7Z7G1_BACA2 AraQ 316 2e-84 Q65GC6.1 Q65GC6_BACLD Integral membrane protein 313 9e-84 P94530.2 ARAQ_BACSU L-arabinose transport system permease protei... 313 1e-83 >A4IP98.1 A4IP98_GEOTN L-arabinose transport system (Permease) Length = 281 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 153/254 (60%), Positives = 191/254 (75%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 +AL LAS KP+TEL RYGLN++L +L+S NY +F Y WYKN Sbjct: 31 FALLLASFKPSTELLRYGLNLKLQAHLLSFKNYIYLFQ---EGAKYLAWYKNSLIITAVG 87 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 MVGY L +Y F+GRN IF LVL VMMIP+EI++LPLYKLM+S K+INT WG Sbjct: 88 TVLSLLFSSMVGYALAVYDFKGRNAIFILVLTVMMIPIEILMLPLYKLMVSFKMINTYWG 147 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VI+P +VAP+ IFFFRQ+ALGLPK+ +DA RIDGCSE+ IFF IMVPLM PAFGA+ ILQ Sbjct: 148 VIVPTMVAPIAIFFFRQYALGLPKELLDAARIDGCSEFRIFFSIMVPLMKPAFGAMAILQ 207 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 AM WN+FLWP ++LRT + FTLPIGL+ ++P GNNY+ LI+G++L ILPI+VLF+FFQ Sbjct: 208 AMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTPYGNNYDILISGSLLTILPIIVLFMFFQ 267 Query: 272 RFFMEGLTVGGIKG 285 R+F+ GLTVGG+KG Sbjct: 268 RYFISGLTVGGVKG 281 >B4BMB7.1 B4BMB7_9BACI Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 281 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 153/254 (60%), Positives = 191/254 (75%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 +AL LAS KP+TEL RYGLN++L +L+S NY +F Y WYKN Sbjct: 31 FALLLASFKPSTELLRYGLNLKLQAHLLSFKNYIYLFQ---EGAKYLAWYKNSLIITAVG 87 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 MVGY L +Y F+GRN IF LVL VMMIP+EI++LPLYKLM+S K+INT WG Sbjct: 88 TVLSLLFSSMVGYALAVYDFKGRNAIFILVLTVMMIPIEILMLPLYKLMVSFKMINTYWG 147 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VI+P +VAP+ IFFFRQ+ALGLPK+ +DA RIDGCSE+ IFF IMVPLM PAFGA+ ILQ Sbjct: 148 VIVPTMVAPIAIFFFRQYALGLPKELLDAARIDGCSEFRIFFSIMVPLMKPAFGAMAILQ 207 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 AM WN+FLWP ++LRT + FTLPIGL+ ++P GNNY+ LI+G++L ILPI+VLF+FFQ Sbjct: 208 AMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTPYGNNYDILISGSLLTILPIIVLFMFFQ 267 Query: 272 RFFMEGLTVGGIKG 285 R+F+ GLTVGG+KG Sbjct: 268 RYFISGLTVGGVKG 281 >A7Z7G1.1 A7Z7G1_BACA2 AraQ Length = 280 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/253 (58%), Positives = 199/253 (78%), Gaps = 3/253 (1%) Query: 33 ALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXXX 92 L L SLKP++EL R GLN+RLD ++MSLDNY +F+G YF W+ N Sbjct: 31 CLLLGSLKPSSELMRIGLNLRLDPDVMSLDNYTYLFNG---GSIYFKWFFNSLLLGVLTT 87 Query: 93 XXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWGV 152 ++GYGLG+Y F+GRN+IF LVL++MM+P+E+++LPL+KL + L LI++ GV Sbjct: 88 VLTLFFSSLIGYGLGVYEFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGV 147 Query: 153 ILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQA 212 ILPFIV+P+ +FFFRQ+ALGLPKD +D+ R+DGC+E+GIFF+IM PLM PAFGA+ ILQ+ Sbjct: 148 ILPFIVSPVAVFFFRQYALGLPKDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQS 207 Query: 213 MNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQR 272 +NSWNNFLWPLIVLR+ E FTLPIGL+ +SP GNNY+ LI+G+V AILP++++FLFFQ+ Sbjct: 208 LNSWNNFLWPLIVLRSKEMFTLPIGLSGLLSPYGNNYDMLISGSVFAILPVIIIFLFFQK 267 Query: 273 FFMEGLTVGGIKG 285 +F+ GLTVGG+KG Sbjct: 268 YFISGLTVGGVKG 280 >Q65GC6.1 Q65GC6_BACLD Integral membrane protein Length = 280 Score = 313 bits (803), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 143/254 (56%), Positives = 199/254 (78%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 + L L SLKP++EL R+GLN++L ++SLDNY +F+G YF W+ N Sbjct: 30 FCLVLGSLKPSSELLRFGLNLKLSPEILSLDNYTYLFNG---GSIYFQWFSNSLILVVIS 86 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 MVGYGL +Y F+G+NL+F VL++MM+P+EI++LPL+K+ +SL +++T G Sbjct: 87 TVLTLLFSSMVGYGLAVYDFKGKNLLFVAVLLIMMVPIEILMLPLFKMTVSLHIVDTYAG 146 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VILPFIV+P+ +FFFRQ+ALGLP+D +D+ R+DGC+E+GI+F+IM PLM PAFGA+ ILQ Sbjct: 147 VILPFIVSPVAVFFFRQYALGLPRDLLDSARMDGCTEFGIYFRIMAPLMKPAFGAMIILQ 206 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 ++NSWNNFLWPLIVLR+ E FTLPIGL++ +SP GNNY+ LI+G+VLAILP++++FLFFQ Sbjct: 207 SLNSWNNFLWPLIVLRSKEMFTLPIGLSALLSPYGNNYDMLISGSVLAILPVILIFLFFQ 266 Query: 272 RFFMEGLTVGGIKG 285 ++F+ GLT GGIKG Sbjct: 267 KYFISGLTAGGIKG 280 >P94530.2 ARAQ_BACSU L-arabinose transport system permease protein araQ Length = 281 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 145/254 (57%), Positives = 197/254 (77%), Gaps = 3/254 (1%) Query: 32 YALFLASLKPATELFRYGLNVRLDFNLMSLDNYKSIFSGLGAAGNYFGWYKNXXXXXXXX 91 + L L SLKP++EL R GLN+ +D +MS DNY +F+G YF W+ N Sbjct: 31 FCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNG---GSIYFKWFFNSLVLGLFT 87 Query: 92 XXXXXXXXXMVGYGLGMYRFRGRNLIFTLVLVVMMIPVEIILLPLYKLMISLKLINTIWG 151 M+GYGL +Y F+GRN+IF LVL++MM+P+E+++LPL+KL + L LI++ G Sbjct: 88 TVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTG 147 Query: 152 VILPFIVAPLPIFFFRQFALGLPKDFMDAGRIDGCSEYGIFFKIMVPLMAPAFGAITILQ 211 VILPFIV+P+ +FFFRQ+ALGLP+D +D+ R+DGC+E+GIFF+IM PLM PAFGA+ ILQ Sbjct: 148 VILPFIVSPVAVFFFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQ 207 Query: 212 AMNSWNNFLWPLIVLRTTEQFTLPIGLASFVSPLGNNYEALIAGAVLAILPILVLFLFFQ 271 ++NSWNNFLWPLIVLR+ E FTLPIGL+S +SP GNNY+ LI+G+V AILP++++FLFFQ Sbjct: 208 SLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSPYGNNYDMLISGSVFAILPVIIIFLFFQ 267 Query: 272 RFFMEGLTVGGIKG 285 ++F+ GLTVGG+KG Sbjct: 268 KYFISGLTVGGVKG 281 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.148 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,388,494,790 Number of extensions: 54175506 Number of successful extensions: 188702 Number of sequences better than 1.0e-05: 5860 Number of HSP's gapped: 181469 Number of HSP's successfully gapped: 5860 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)