BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0049.p (1118 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6B3.1 B1D6B3_9BACL Alpha amylase catalytic region 220 6e-55 B1D995.1 B1D995_9BACL S-layer domain protein 220 6e-55 B1D5V3.1 B1D5V3_9BACL S-layer domain protein 213 8e-53 B1DD62.1 B1DD62_9BACL S-layer domain protein 212 2e-52 B1DDC7.1 B1DDC7_9BACL Arabinogalactan endo-1,4-beta-galactosidas... 199 1e-48 >B1D6B3.1 B1D6B3_9BACL Alpha amylase catalytic region Length = 2160 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 145/356 (40%), Positives = 207/356 (58%), Gaps = 23/356 (6%) Query: 775 GQARASLPVNAGALLGTRALVIRDGEASLQIPASVLTELGTKLAEAKRSGAA-IMIKLAP 833 G+A LPV A LLG + L ++ G+ +L IP+++L EL K + S A+ I+++L P Sbjct: 1810 GKAEVLLPVGAADLLGGKPLELKQGDLTLLIPSAMLQELMKKAGGSVSSAASHIVLQLKP 1869 Query: 834 VPEGA-------APAGNGSGIYRQEGTAYEFGLVLRAADGSEI-TLSSFSQPVRAMLPYA 885 + A A A +GS + EF L L +G E LS F +P++ Sbjct: 1870 LDAAAERDLLKKAAAVDGSEL-SPASAVIEFRLALVDGNGKEAAVLSKFEEPLKLTFKL- 1927 Query: 886 DSAVNVELLGVYLKHGDTSQWSYVGGT--ADKTSKKVVLMLDHFSTYAVLSYDATYTDVP 943 DS + +L G+Y D + YVGGT AD T + + HFS YA L Y + DVP Sbjct: 1928 DSKADKKLTGIYYV-ADDGKLEYVGGTLNADGT---ITADIQHFSKYAALEYSKIFGDVP 1983 Query: 944 PDHWAFAALKSLSAKHVVTGLPDSLFAPAQTTTRAEFTAMLVRALNLKSTGGQLPFQDVQ 1003 HWA+ ++ L++KHVVTG+ F P ++ TRAEF A+LVRA+NL++T F DV Sbjct: 1984 LTHWAWEMIRELASKHVVTGVTADRFEPERSVTRAEFAALLVRAMNLQAT-KPTGFTDVA 2042 Query: 1004 DGSWYTGSVAAAYEAGLVQGVSATAFAPDARMTREQMAVLLIKAYEYKQGQA--ASRGGL 1061 SWY SVAAA EAG+++G +AT+FAP+A + RE+M V+L++AYE K G+ +S G Sbjct: 2043 ASSWYADSVAAAAEAGIIKGRTATSFAPNAVIMREEMTVMLMRAYEVKSGKKLESSADGS 2102 Query: 1062 KN---LSDSALISVWAKAQVDQAVAHGMMQGTGDGRFDPQGPVSRAQGAQAMYNFL 1114 + +DSA I WAKA +D AV G + G G G+FDPQG +RA+ A+ +Y L Sbjct: 2103 TDGSTFTDSAAIHDWAKASIDAAVKLGFLNGKGQGKFDPQGNTTRAESAKVIYKLL 2158 >B1D995.1 B1D995_9BACL S-layer domain protein Length = 543 Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 137/338 (40%), Positives = 189/338 (55%), Gaps = 9/338 (2%) Query: 781 LPVNAGALLGTRAL-VIRDGEASLQIPASVLTELGTKLAEAKRSGAAIMIKLAPVPEGAA 839 LP N LLG AL +I G+A L IP+ V EL L A+ G +I + + PV EGAA Sbjct: 214 LPANTDELLGKDALNIITSGKAELSIPSGVFAELKKTLTAAQLQGGSIALTVKPV-EGAA 272 Query: 840 PAGNGSGIYRQEGTAYEFGLVLRAADGSEITLSSFSQPVRAMLPYADSAVNVELLGVYLK 899 G+ + G YE L AADG+ L F +PV LP D++ N +L ++ Sbjct: 273 KPTLGTDT-KLSGPIYELKLQWIAADGTSYDLHQFKEPVTLRLP-VDASTNPKLASIFYL 330 Query: 900 HGDTSQWSYVGGTADKTSKKVVLMLDHFSTYAVLSYDATYTDVPPDHWAFAALKSLSAKH 959 D+ +VGGT + V L HFS+YA+L + ++DVP +WA +K L AK Sbjct: 331 P-DSGAPEFVGGTYG--NGVYVAQLSHFSSYAILEINKNFSDVPSSYWASGVIKELFAKQ 387 Query: 960 VVTGLPDSLFAPAQTTTRAEFTAMLVRALNLKSTGGQLPFQDVQDGSWYTGSVAAAYEAG 1019 +VTG S F P ++ TRAEFTA+LVRAL LK+ G F D+ G+WY VA AY+AG Sbjct: 388 IVTGTTASTFEPNRSVTRAEFTALLVRALGLKAEGTP-AFTDIPAGAWYAADVATAYKAG 446 Query: 1020 LVQGVSATAFAPDARMTREQMAVLLIKAYEYKQGQAASRGGLKNLSDSALISVWAKAQVD 1079 +VQGVS+T F+P A +TR++M L ++ YE G+ A + D A IS WA V Sbjct: 447 IVQGVSSTTFSPGASITRQEMVTLAMRGYELMTGKPADATA-EPFKDEASISAWALNNVK 505 Query: 1080 QAVAHGMMQGTGDGRFDPQGPVSRAQGAQAMYNFLRAV 1117 +A A G++QG G F P G +RA+ AQ +Y + + Sbjct: 506 KAAALGIVQGRAKGEFVPLGTSTRAEAAQMLYGIINKL 543 >B1D5V3.1 B1D5V3_9BACL S-layer domain protein Length = 1686 Score = 213 bits (542), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 201/356 (56%), Gaps = 14/356 (3%) Query: 768 VEITLGQGQARASLPVNAGALLGTRALVIR-DGEASLQIPASVLTELGTKLAEAKRSGAA 826 V I L +G R LP++ LGT LV++ G +LQ L KLA + +GA Sbjct: 1339 VAIALDKGTDRVQLPISLIGSLGTNKLVLQASGGPALQWKPETLK----KLAGSAPAGAY 1394 Query: 827 IMIKLAPVPEGAAPAGNGSGIYRQEGTAYEFGLVLRAADGSEITLSSFSQPVRAMLPYAD 886 + L P+ A PA + + +GT Y L L+A DG+ L+S ++A L Sbjct: 1395 LEFALRPLSSTATPAV--PAVMKLKGTVYSLELNLKAKDGT--LLTSVQSDLQAGLEVEV 1450 Query: 887 SA--VNVELLGVYLKHGDTSQWSYVGGTADKTSKKVVLMLDHFSTYAVLSYDATYTDVPP 944 A +N +LLG+Y+ + S+W Y GG ++ L+ T+AV Y+ +Y DV Sbjct: 1451 PAPKLNGKLLGLYVYDRENSRWKYAGGKYKASNGSCAADLNSAGTFAVFEYEKSYMDVGS 1510 Query: 945 DHWAFAALKSLSAKHVVTGLPDSLFAPAQTTTRAEFTAMLVRALNLKSTGGQLP--FQDV 1002 W + A+ SLSAKHVV G+ + FAP + TRAE AM+VRALNL F+DV Sbjct: 1511 SSWFYEAVASLSAKHVVNGVTEEQFAPERKGTRAEVMAMIVRALNLTGNAASSAAGFKDV 1570 Query: 1003 QDGSWYTGSVAAAYEAGLVQGVSATAFAPDARMTREQMAVLLIKAYEYKQGQAASRGGLK 1062 G+WY +AAAYEAGL+QG S+ F P+A ++R+++AV+L++AY+ G+ + G K Sbjct: 1571 PAGAWYGAELAAAYEAGLIQGDSSGRFNPNAPISRQELAVMLLRAYKLAGGELSEAGAGK 1630 Query: 1063 NL-SDSALISVWAKAQVDQAVAHGMMQGTGDGRFDPQGPVSRAQGAQAMYNFLRAV 1117 L +D ALI+ WAK + +A A G+MQG G+G+F P +RA+ AQA+ N L + Sbjct: 1631 TLYADEALIAAWAKTAIAEAGAAGLMQGDGNGQFAPGRHGTRAEIAQAIDNLLEKI 1686 >B1DD62.1 B1DD62_9BACL S-layer domain protein Length = 1521 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 193/360 (53%), Gaps = 23/360 (6%) Query: 768 VEITLGQGQARASLPVNAGALLGTRAL-VIRDGEASLQIPASVLTELGTKLAEAKRSGAA 826 + +T+ G+ P N L+G L ++ DG +L L + + AK +GA Sbjct: 1169 ITVTVANGKNTVQFPSNVIQLVGDNTLKLVMDG-MTLSFTKDDLAGIMGAVTGAKAAGAK 1227 Query: 827 IMIKLAPVPEGAAPAGNGSGIYRQE----------GTAYEFGLVLRAADGSEITLSSFSQ 876 I VP G S I QE T Y+F L + AADG+ + +S+F + Sbjct: 1228 ISFTAVKVPNGEV----NSLINNQEVNSTVKLTTASTVYDFRLSVIAADGTIVPVSTFDE 1283 Query: 877 PVRAMLPYADSAVNVELLGVYLKHGDTSQWSYVGGT-ADKTSKKVVLMLDHFSTYAVLSY 935 P++ D N +LLGVY D YVGGT AD + + HFS YAVL Y Sbjct: 1284 PLKLTFT-VDPNANPDLLGVYYIAAD-GALQYVGGTLADGV---MTAYVKHFSQYAVLEY 1338 Query: 936 DATYTDVPPDHWAFAALKSLSAKHVVTGLPDSLFAPAQTTTRAEFTAMLVRALNLKSTGG 995 D ++TDV P WA ++ ++AKH++TG+ D+LF P TRAEFTAM+ RAL L+ G Sbjct: 1339 DKSFTDVSPAFWAHDIIQQIAAKHIITGVSDTLFNPEDNVTRAEFTAMIARALGLEEVDG 1398 Query: 996 QLPFQDVQDGSWYTGSVAAAYEAGLVQGVSATAFAPDARMTREQMAVLLIKAYEYKQG-Q 1054 F DV+ +WY G + A +AG+V G S+ AFAP+ +TRE+MAV+ ++AYEY +G Q Sbjct: 1399 SAIFLDVKADAWYAGYIGAVSKAGIVMGRSSIAFAPNDAITREEMAVMAVRAYEYVKGKQ 1458 Query: 1055 AASRGGLKNLSDSALISVWAKAQVDQAVAHGMMQGTGDGRFDPQGPVSRAQGAQAMYNFL 1114 A + + +D + IS WA+ A G+++G + F PQ ++RA+ AQ M N + Sbjct: 1459 AEVEKDIASFADKSSISAWAQDAASLAQELGLIKGRSNNLFAPQALMTRAESAQVMGNLI 1518 >B1DDC7.1 B1DDC7_9BACL Arabinogalactan endo-1,4-beta-galactosidase EC=3.2.1.89 Length = 1144 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 139/354 (39%), Positives = 192/354 (54%), Gaps = 16/354 (4%) Query: 770 ITLGQGQARASLPVNAGALLGTRALVIRDGEASLQIPASVLTELGTKLAEAKRSGAAIMI 829 + L G +A LP L + + G+ SL IP++V+TEL KL +G+ I + Sbjct: 799 VELPTGTTQAVLPSGLYDQLKKGPVTLSAGDLSLTIPSAVVTELLGKLK--TEAGSKITL 856 Query: 830 KLAPVPEGAAP---AGNGSGIYRQEGTAYEFGLVLRAADGSEITLSSFSQPVRAMLPYAD 886 L PV A AG G+ + R T Y FGL + A G+ L+ FS P+ + + Sbjct: 857 SLVPVTGEDADKMLAGTGADV-RALATVYNFGLSVTDAAGNVEKLAKFSSPLTLRMKASQ 915 Query: 887 SAVNVELLGVYLKHGDTSQWSYVGGT-ADKTSKKVVLMLDHFSTYAVLSYDATYTDVPPD 945 S N EL G+Y D YVGG A+ + V HFS+Y +L +YTDVP Sbjct: 916 SG-NAELTGIYYIAED-GFIHYVGGQFANGVWQAEVT---HFSSYGLLEVKKSYTDVPSA 970 Query: 946 HWAFAALKSLSAKHVVTGLPDSLFAPAQTTTRAEFTAMLVRALNLKSTGGQ-LPFQDVQD 1004 HWA A++SLSAK ++ G + F P + +RAEFTA+LVR L L TGGQ F DV Sbjct: 971 HWAALAIESLSAKQIINGTAAASFEPERAISRAEFTAILVRTLKLTGTGGQATRFSDVPA 1030 Query: 1005 GSWYTGSVAAAYEAGLVQGVSATAFAPDARMTREQMAVLLIKAYEY-KQGQAASRGGLKN 1063 G WY +V+AAYEAGLV+G SA F PD +TR++MAV+L KAYE +G +AS Sbjct: 1031 GVWYAEAVSAAYEAGLVKGRSAELFVPDGSITRQEMAVMLAKAYEISHEGVSASSIAHAE 1090 Query: 1064 LS--DSALISVWAKAQVDQAVAHGMMQGTGDGRFDPQGPVSRAQGAQAMYNFLR 1115 L D + I+ WA V A G+++G RF P ++RA+ A+ +Y L+ Sbjct: 1091 LPFLDKSSIADWAMPSVQWAYEQGLLKGRSGDRFAPAASMTRAEAAEVIYRLLK 1144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,210,682,658 Number of extensions: 260787037 Number of successful extensions: 494305 Number of sequences better than 1.0e-05: 1815 Number of HSP's gapped: 488336 Number of HSP's successfully gapped: 2103 Length of query: 1118 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 971 Effective length of database: 1,675,806,998 Effective search space: 1627208595058 Effective search space used: 1627208595058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 137 (57.4 bits)