BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0045.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K641.1 B3K641_9BACI Binding-protein-dependent transport system... 340 6e-92 B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport system... 325 2e-87 B1D781.1 B1D781_9BACL Binding-protein-dependent transport system... 290 8e-77 C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane prot... 286 2e-75 C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport system... 285 3e-75 >B3K641.1 B3K641_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 340 bits (873), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 149/277 (53%), Positives = 218/277 (78%) Query: 1 LKQQSWISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRT 60 +K ++W K +IYL+LAAG F L P+ W++R+SL++MG+++++PP IP+ + N+ Sbjct: 1 MKAKAWFEKGLIYLVLAAGGIFSLLPLVWLIRSSLMNMGQIFELPPVWIPRPVQLSNYSE 60 Query: 61 ALDAYPFGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFF 120 AL PFG++FMN+ II ++LGV+++SS+ AYSF+R+ W+GR+ VFG++L+ +M+P+ Sbjct: 61 ALTILPFGQYFMNTAIIVVFSVLGVIVTSSISAYSFARMKWRGRNMVFGLLLSSMMLPYA 120 Query: 121 VVMIPQYVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGH 180 V +IP ++ W+ + LT++F+PL+APAWFGGG FNIFLLRQF+L IPR+LDEAA VDGAGH Sbjct: 121 VTLIPTFIGWSKVGLTNSFIPLIAPAWFGGGAFNIFLLRQFYLSIPRDLDEAAYVDGAGH 180 Query: 181 LRIYAVIIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQ 240 LRI+ II+PL K A+IV+GL +FL WND+LGPL ++ E YTL GL F+G YSA+ Sbjct: 181 LRIFRSIILPLTKPALIVVGLFSFLTAWNDFLGPLVYLNDETKYTLALGLQQFKGMYSAE 240 Query: 241 WNLMMAATTVIVIPSLVIFLIAQRHFIEGIAMTGIKG 277 W+LMMAA TV+++P++++F I QR+FIEGI +TGIK Sbjct: 241 WHLMMAAATVVLLPAIIVFFIGQRYFIEGITLTGIKA 277 >B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 151/271 (55%), Positives = 209/271 (77%) Query: 7 ISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTALDAYP 66 +SK+IIYLLLAAG+ CLFP +W++R+S +D +++ IPP IP N+R A+ P Sbjct: 7 LSKSIIYLLLAAGTCLCLFPFYWLLRSSFMDQSDIFVIPPIWIPHDWLISNYREAMTILP 66 Query: 67 FGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFVVMIPQ 126 F R+F+N+ II L + GV+LSSS+CAYSF+R+ W GR+ VF VILT +M+P V +IPQ Sbjct: 67 FNRYFLNTFIIVVLEVSGVVLSSSICAYSFARLRWPGRNLVFMVILTSMMLPGAVTLIPQ 126 Query: 127 YVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHLRIYAV 186 YV W L T+TF+PL PAWFGGG FN+FLLRQFF+ IP+ELDEAA VDGAG+ RIY+ Sbjct: 127 YVGWAKLGATNTFIPLTLPAWFGGGAFNVFLLRQFFMTIPKELDEAALVDGAGYFRIYSR 186 Query: 187 IIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQWNLMMA 246 I++PL A++V+GL +FL WND++GPL +++ EK YTL GL F+G Y+AQW+LMMA Sbjct: 187 IMLPLLVPALVVVGLFSFLNGWNDFMGPLIYLSDEKLYTLALGLQTFKGMYNAQWHLMMA 246 Query: 247 ATTVIVIPSLVIFLIAQRHFIEGIAMTGIKG 277 ATTV+++P++++F + Q++F+EGI MTG+KG Sbjct: 247 ATTVVLLPAMLVFFLGQKYFVEGIVMTGLKG 277 >B1D781.1 B1D781_9BACL Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 290 bits (743), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 126/252 (50%), Positives = 194/252 (76%) Query: 26 PIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTALDAYPFGRFFMNSVIITSLAILGV 85 P W++R+S++D+ +++ +PP IPK +++NF+ AL PFG FF N++II + +LG Sbjct: 25 PFLWLLRSSVMDLSQIFIMPPQWIPKPFHFENFKEALTVVPFGTFFKNTLIIVAGVLLGT 84 Query: 86 LLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFVVMIPQYVFWNALHLTDTFVPLVAP 145 ++SS++ A+ FSRI WKGRD VF ++++ +M+P V +IP ++ W L DTF PL+ P Sbjct: 85 VVSSTIAAFGFSRIKWKGRDMVFAILMSSMMLPGAVTLIPSFIGWKELGFYDTFYPLIVP 144 Query: 146 AWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHLRIYAVIIVPLAKQAMIVIGLLTFL 205 A+FGGG+FNIFLLRQF++ IP++ DEAA VDGA + +IY I++PL++ A+IV+ L TFL Sbjct: 145 AYFGGGMFNIFLLRQFYMSIPQDFDEAALVDGANYFQIYWRILLPLSRSAVIVVALFTFL 204 Query: 206 ANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQWNLMMAATTVIVIPSLVIFLIAQRH 265 A+WND++GPL ++ S+ +TL GL +FQGSY+AQW+L+MAA+T +V+P +++FL+ QR Sbjct: 205 ASWNDFMGPLIYLKSDSRFTLALGLQMFQGSYNAQWDLLMAASTAVVLPCVLVFLVGQRF 264 Query: 266 FIEGIAMTGIKG 277 F+EGI +TG+KG Sbjct: 265 FLEGITLTGLKG 276 >C0V077.1 C0V077_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 301 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 129/271 (47%), Positives = 193/271 (71%) Query: 7 ISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTALDAYP 66 + + ++L+L AG+ + P W++ TSL + ++++ PP IP + W N+ AL P Sbjct: 31 LGRCFVWLVLCAGAVVMMLPFLWLISTSLKETWQVFRYPPQWIPNPVRWSNYPEALTTLP 90 Query: 67 FGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFVVMIPQ 126 FG + N+++IT L ++G+LLSSSLCAY F+R+ + GRD +F V+L+ LM+P+ V MIP Sbjct: 91 FGLYVKNTLVITVLNMVGILLSSSLCAYGFARLRFPGRDLIFMVLLSTLMLPYAVTMIPS 150 Query: 127 YVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHLRIYAV 186 Y+ + L DT+ PL+ P WFGGG+FNIFLLRQFF IP EL EAA++DGA RIY Sbjct: 151 YIIFKYLGWIDTYYPLIVPNWFGGGIFNIFLLRQFFRTIPVELSEAARIDGASEFRIYWQ 210 Query: 187 IIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQWNLMMA 246 II+PLA+ A+ V+ + TFL NWND++GPL +++S + YT+ GL F+G YS QW +MA Sbjct: 211 IILPLARPALTVVAIFTFLNNWNDFIGPLIYLSSPEKYTVALGLATFKGLYSTQWQYLMA 270 Query: 247 ATTVIVIPSLVIFLIAQRHFIEGIAMTGIKG 277 A+TV+++P + +F +AQR+F++GI +TG+KG Sbjct: 271 ASTVMILPVIALFFLAQRYFVQGIVLTGLKG 301 >C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 131/270 (48%), Positives = 197/270 (72%) Query: 7 ISKAIIYLLLAAGSFFCLFPIFWMVRTSLIDMGELYQIPPGLIPKVLNWDNFRTALDAYP 66 + + IY L G+ L P+ W+VR++L+ G+++ PP IP + WDNF AL A P Sbjct: 30 LKRVGIYAFLVLGAIPTLLPLIWLVRSALMTSGQIFISPPEWIPDPVAWDNFAGALTAVP 89 Query: 67 FGRFFMNSVIITSLAILGVLLSSSLCAYSFSRIDWKGRDKVFGVILTGLMIPFFVVMIPQ 126 FGR+F+N++II ++G LLS S A+SF+R+ W+ ++ VFG+++TG+M+P+ V +IP Sbjct: 90 FGRYFVNTMIIEVGVLVGTLLSCSFAAFSFARLRWRFKNVVFGLLMTGVMLPYAVTLIPT 149 Query: 127 YVFWNALHLTDTFVPLVAPAWFGGGVFNIFLLRQFFLGIPRELDEAAKVDGAGHLRIYAV 186 ++FW A+ +T+VPL+ PA+FG VFNIFLLRQFFL +P ELDE+A +DGA ++Y Sbjct: 150 FLFWQAVGAVNTYVPLILPAFFGTAVFNIFLLRQFFLSLPYELDESAYIDGANPFQVYWR 209 Query: 187 IIVPLAKQAMIVIGLLTFLANWNDYLGPLAFITSEKNYTLMQGLTLFQGSYSAQWNLMMA 246 I++PL+K A++V+G+ TFL WNDYLGPL ++ YTL GL FQG+Y+AQW +MA Sbjct: 210 IVLPLSKPALMVVGIFTFLGVWNDYLGPLIYLNDSDMYTLAMGLASFQGTYTAQWGYLMA 269 Query: 247 ATTVIVIPSLVIFLIAQRHFIEGIAMTGIK 276 A TV+++P +++F IAQ++F+EGIA+TG+K Sbjct: 270 AATVVLLPIILLFAIAQKYFVEGIALTGLK 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.145 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,638,691,721 Number of extensions: 68482977 Number of successful extensions: 230094 Number of sequences better than 1.0e-05: 5892 Number of HSP's gapped: 219996 Number of HSP's successfully gapped: 5896 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)