BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0044.p (510 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K645.1 B3K645_9BACI Response regulator receiver 207 3e-51 B3KJG1.1 B3KJG1_9BACI Response regulator receiver 153 3e-35 B3KDQ8.1 B3KDQ8_9BACI Response regulator receiver 139 5e-31 B1D785.1 B1D785_9BACL Two component transcriptional regulator, A... 114 2e-23 B1DK40.1 B1DK40_9BACL Two component transcriptional regulator, A... 103 6e-20 >B3K645.1 B3K645_9BACI Response regulator receiver Length = 535 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 156/549 (28%), Positives = 241/549 (43%), Gaps = 65/549 (11%) Query: 1 MYDILLVDDEPAHXXXXXXXXXXXXPDYGIATARSGREALDICSGRCFQIIITDIRMPQM 60 MY +L+VDDEP H PDY + A+ G EAL I I TDIRMP M Sbjct: 1 MYHVLIVDDEPRHRRGIAEMIKTLRPDYRLFMAKDGAEALRIAIANRIDITFTDIRMPNM 60 Query: 61 DGLHFLEQISPSATPRRVIYLSGYSRFEYAQKAMSLGSFEYMLKPLDPQKFIAVLEKTEK 120 DG +EQ+ + +++ LS Y F+YA+KA+ G+F+Y+LKPL+ + +L K + Sbjct: 61 DGFALIEQLVERSESMKIVILSVYGHFDYARKALKFGAFDYLLKPLESRDMSDMLNKLDT 120 Query: 121 SLEQEFAARQQYERLAVRLDVAEPAYRHRLLNGWIEGKQLMAAEKAEIAGILGFSGRGSL 180 ++E+E Q L +L+ P Y LL+ W+ E EI G++ G + Sbjct: 121 AIEKERMRLQDGANLQEKLNSTIPVYEQHLLSRWVRSVA-NEDELREIEGLVPQGQVGFV 179 Query: 181 LVAHTEEEAAQER--GMALLRQQG----WCTAFASRQDPGLLVAAGGAEP-------DSG 227 +VA + E+ G + W A P L G EP + Sbjct: 180 IVAKLSKSEIDEKYHGEEFTEVKASLKDWMGQVAESIGPTLSFYLDGDEPMLISVITPAH 239 Query: 228 LLQGLVR------------------LGLTVGVSAPLEHFIDEXXXXXXXXXXXXXXXFYA 269 L+ L++ L L++GV + E FY Sbjct: 240 SLEWLMKREAERLTEFIDRVRLEFGLTLSIGVGDGVVDLYREAPRSFKQALHALDYTFYC 299 Query: 270 -------------RPAEPQVYWA-AEGGLDAGRNLTFDKRLPGRLREVIDGWDGHEAFQS 315 P +P + AE G+ A + R RE +A +S Sbjct: 300 GSGKVVVNYGIAYNPYKPSLELVPAETGIAAA--------VANRERE--------KAIES 343 Query: 316 AAAEAVRRILGEGAPPMPEELVRGVQQLLYKVIYDLE-SVREELLAGLLKRASCFAEGIT 374 + +R++L +G P P L + +L ++ E S+R E + Sbjct: 344 LSL-LIRQLL-DGDYPSPSHLKHSILYVLVNLVKASEASIRSEEANNFVSEMEFQIPACA 401 Query: 375 VYHELIDSTAGLLKDIACAVAEAKRERKEGVMSRCLDYIDSHYMEDLSQETVAAMFHFSS 434 E+ + L I ++ + + E +++ C Y+ HYMEDLS E VA F FS Sbjct: 402 TLDEVEEKAGYYLNRIIDSIENRRNNKNERIIAMCKAYLAEHYMEDLSLELVAKRFFFSP 461 Query: 435 SYFCQFFKSRLHMTFNQYVTRLRLNKAKEMLKSSNVKVYRVAEQLGYHDVKYFNRVFKKE 494 +YF FF+S MTF +Y+ +LR++KA +ML+ N K+ +A +G+ D YF R+FK+E Sbjct: 462 AYFSSFFRSHTSMTFTEYLLKLRMDKAMQMLEGGNRKISEIALSVGFRDAGYFTRIFKRE 521 Query: 495 TGLTPEEYR 503 TGL+PEE+R Sbjct: 522 TGLSPEEFR 530 >B3KJG1.1 B3KJG1_9BACI Response regulator receiver Length = 539 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 147/556 (26%), Positives = 245/556 (44%), Gaps = 70/556 (12%) Query: 1 MYDILLVDDEPAHXXXXXXXXXXXXPDY-GIATARSGREALDICSGRCFQIIITDIRMPQ 59 MY IL+VDDEP Y I +GR+AL+ + +++TDI MP Sbjct: 1 MYTILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQPDVVLTDINMPY 60 Query: 60 MDGLHFLEQISPSATPRRVIYLSGYSRFEYAQKAMSLGSFEYMLKPLDPQKFIAVLEKTE 119 MDGL I+ ++I L+G+ FEYAQ+A+ L +++LKP+ + +L+K + Sbjct: 61 MDGLELSRHITERFPKTKIIILTGFDDFEYAQQAVKLQVTDFILKPVTAAELRDMLDKLK 120 Query: 120 KSLEQEFAARQQYERLAVRLDVAEPAYRHRLLNGWIEGKQLMAAEKAEIAGILGFSGRGS 179 +++E + +RL +L+ + R R L + + +E RG Sbjct: 121 LEMDEERGHTEHLKRLKKQLNESLVLLRERFLE-RLASSPMKRSEMESRLDYFDIPLRGP 179 Query: 180 LLVA--------HTEEEAAQERGMA---------LLRQQGWCTAFASRQDPGLLVAAGGA 222 L +A ++E+ A A +L + F +++ + + +G Sbjct: 180 LYIAMAADMDELRSDEQHADNELHAFALYNIMQEILAGEPGAAVFRYKENKVMTILSGSD 239 Query: 223 EPD------------SGLLQGLVRLGLTVGVSAPLEHFIDEXXXXXXXXXXXXXXXFYAR 270 E D G + ++ +TVG+ D + + Sbjct: 240 EKDLHARAQELAEDIRGSTKQFMKFTVTVGIGTICRELQD--------------IRYSCK 285 Query: 271 PAEPQVYWAAEGGLDAGRNLT-FDKRLPGRLREVIDGWDGHEAFQSA--------AAEAV 321 +E + + G D ++T +KR G L +DG + A SA + Sbjct: 286 ASEAALEYRLLIGRDQVVHITDLEKRGSGPL---LDGIETETALVSAIRAGTGSEVKACI 342 Query: 322 RRILGE-GAPPMPEEL--VRGVQQLL--YKVIYDLESVREELLAG---LLKRASCFAEGI 373 RR++ E G+ + EL VR ++ +L + + ++ S EL+ LL F Sbjct: 343 RRLINEIGSASISIELCYVRVLRVMLAVLQTLMEIGSNGNELIGKEKRLLSDLYSFRSLD 402 Query: 374 TVYHELIDSTAGLLKDIACAVAEAKRERKEGVMSRCLDYIDSHYM-EDLSQETVAAMFHF 432 + L + L+D VA+ +++ M +D+I HY E+LS +TV + Sbjct: 403 EIERWLNEVCEQALRD----VAKTRKDIARSQMLEAVDFIQRHYEDEELSIKTVCSRIFM 458 Query: 433 SSSYFCQFFKSRLHMTFNQYVTRLRLNKAKEMLKSSNVKVYRVAEQLGYHDVKYFNRVFK 492 S+SYF FKS TF +YVT +R+ KAKE+LK S +K Y +A + GY D +YF+ +FK Sbjct: 459 STSYFSALFKSHTGKTFVEYVTEVRMEKAKELLKHSLLKTYEIAAKTGYQDPQYFSVLFK 518 Query: 493 KETGLTPEEYRSLTGT 508 K TG TP EYR+ T Sbjct: 519 KHTGDTPTEYRNKMAT 534 >B3KDQ8.1 B3KDQ8_9BACI Response regulator receiver Length = 518 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 144/542 (26%), Positives = 249/542 (45%), Gaps = 68/542 (12%) Query: 1 MYDILLVDDEPAHXXXXXXXXXXXXPDYGIA-TARSGREALDICSGRCFQIIITDIRMPQ 59 M +L+VDDEP Y + TA +G EAL+ +++ DIRMP Sbjct: 1 MMKVLIVDDEPKLREGLKSIVPWTELGYQVVDTAANGNEALEKHGKYDPDLMLIDIRMPG 60 Query: 60 MDGLHFLEQISPSATPRRVIYLSGYSRFEYAQKAMSLGSFEYMLKPLDPQKFIAVLEKTE 119 MDGL +E I ++ LSGY+ F+YA++A+S Y+LKP+D + L + + Sbjct: 61 MDGLQLIEAIRNLDAEIHLLILSGYADFDYAKRAISHRVDGYLLKPVDEDELSKYLLQIK 120 Query: 120 KSLEQEFAARQQYERLAVRLDVAEPAYRHRLLNGWI--EGKQLMAAEK--AEIAGILGFS 175 +++EQE ER A+ +E + R + + W E K AA + AE +G+L ++ Sbjct: 121 EAIEQE------QERKALNRAASEMS-REQFIQTWFNPESKPDSAALRHMAERSGLL-WN 172 Query: 176 GRGSLLVAHTEEEAAQERGMALLRQQ--------GWCTAFASRQDPGLL-----VAAGGA 222 LL H + + E L+ Q G F+ G+L + AGG Sbjct: 173 HYQVLLFHHNGSDESGEETDDRLKNQLIEAFEENGRGAVFSLHGQLGILMPTPVLTAGGR 232 Query: 223 EPDSGLL-QGLVRLGLTVGVSAPLE-HFIDEXXXXXXXXXXXXXXXFYARPAE---PQVY 277 + L+ + R G + S + H +++ F+ P E P+ Sbjct: 233 KELLQLVEEAASRAGTAITASLGRQVHRLEDVADSYRCAKERIRERFFYAPGEMLFPESE 292 Query: 278 WAAEGGLDAGRNLTFDKRLPGRLREVIDGWDGHEAFQSAAAEAVRRILGEGAPPMPE--- 334 A G D R +D P +L E + + A E +++L A M + Sbjct: 293 RFAGGNTDEERQ-PYD---PEQLMEQL-----YYAVDVGNVEVQQKLLYTAASAMVKEEY 343 Query: 335 ----------ELVRGVQQLLYKVIYDLESVREEL---LAGLLKRASCFAEGITVYHELID 381 EL+ GV L + +L+S +E +A + ++ + + +L Sbjct: 344 TEERMKRAFVELLTGVHNKLMQHHTELQSRTKEYSDRIAAIFRQRTAY--------DLCR 395 Query: 382 STAGLLKDIACAVAEAKRERKEGVMSRCLDYIDSHYMEDLSQETVAAMFHFSSSYFCQFF 441 ++ L+++ R+++ M R +D I +Y E++ ET+A++F+++S+Y + F Sbjct: 396 HSSQFLEELIWQAGNGGRDQE---MKRIMDLIQRNYNENIKLETLASIFNYNSAYLGKMF 452 Query: 442 KSRLHMTFNQYVTRLRLNKAKEMLKSSNVKVYRVAEQLGYHDVKYFNRVFKKETGLTPEE 501 K+ FN Y+ ++R++KAK+ LK +KVY+VAE++GY +V YF+ FKK G +P Sbjct: 453 KNTTGEYFNTYLDKVRIDKAKDFLKQG-MKVYQVAEKVGYTNVDYFHSKFKKYVGTSPSN 511 Query: 502 YR 503 +R Sbjct: 512 FR 513 >B1D785.1 B1D785_9BACL Two component transcriptional regulator, AraC family Length = 538 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 94/156 (60%) Query: 3 DILLVDDEPAHXXXXXXXXXXXXPDYGIATARSGREALDICSGRCFQIIITDIRMPQMDG 62 +IL+VDDEP H PD + TA+ G AL + ++++DI+MP++DG Sbjct: 2 NILIVDDEPRHLRGMAGMIQMMRPDAKVKTAKDGEAALALVREEQPDVVLSDIQMPKLDG 61 Query: 63 LHFLEQISPSATPRRVIYLSGYSRFEYAQKAMSLGSFEYMLKPLDPQKFIAVLEKTEKSL 122 L FL+++ +V+ +S Y+ FEYAQ+A+ G+++Y+LKP+D K +L++ ++ L Sbjct: 62 LSFLQRLQEEELRTKVVMVSAYNLFEYAQRAIRHGAYDYLLKPVDMDKVEVLLQRLDQQL 121 Query: 123 EQEFAARQQYERLAVRLDVAEPAYRHRLLNGWIEGK 158 +E R + + +L++A AYR RLL+ W+ G+ Sbjct: 122 AEEERERGESAEIKQKLELASSAYRSRLLHQWLSGE 157 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 5/137 (3%) Query: 367 SCFAEGITVYHELIDSTAGLLKDIACAVAEAKRERKEGVMSRCLDYIDSHYMEDLSQETV 426 SC G+ LI+ G L ++ ++ + K+ E + +CL +I HY EDL+ E Sbjct: 394 SCTGSGM-----LIELMLGRLAEVHKSLTDRKQGSGELAVEQCLGWIQGHYAEDLTLEMA 448 Query: 427 AAMFHFSSSYFCQFFKSRLHMTFNQYVTRLRLNKAKEMLKSSNVKVYRVAEQLGYHDVKY 486 A FHF+ SYF KSR +F+ ++T R+ AKE+L K+Y +AEQ GY D KY Sbjct: 449 AEQFHFNPSYFSTLMKSRTGRSFSDHLTEARIRAAKELLAGGRFKIYEIAEQCGYRDTKY 508 Query: 487 FNRVFKKETGLTPEEYR 503 F R+FK++ GL+PE Y+ Sbjct: 509 FTRIFKRQVGLSPEAYK 525 >B1DK40.1 B1DK40_9BACL Two component transcriptional regulator, AraC family Length = 544 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 84/133 (63%) Query: 378 ELIDSTAGLLKDIACAVAEAKRERKEGVMSRCLDYIDSHYMEDLSQETVAAMFHFSSSYF 437 EL+ T ++K+I+ +A+ + + V+ + ++Y+ +HY E+LS +VA S +Y Sbjct: 406 ELLQETIRIIKEISEFIADRRMSHAQIVVQKAIEYMCAHYKENLSLRSVAESVFLSPNYL 465 Query: 438 CQFFKSRLHMTFNQYVTRLRLNKAKEMLKSSNVKVYRVAEQLGYHDVKYFNRVFKKETGL 497 F++ L +F + R+R+ +AK+MLK+ K+Y VA+Q+GY ++ YF +FK+ TGL Sbjct: 466 GALFRTELGESFTDQLIRIRIQRAKDMLKNPEFKLYEVADQIGYQNMGYFTGLFKRMTGL 525 Query: 498 TPEEYRSLTGTPR 510 +P+EYR L G R Sbjct: 526 SPKEYRDLHGYSR 538 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,773,116,746 Number of extensions: 108944038 Number of successful extensions: 363670 Number of sequences better than 1.0e-05: 6261 Number of HSP's gapped: 371314 Number of HSP's successfully gapped: 6837 Length of query: 510 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 370 Effective length of database: 1,741,754,103 Effective search space: 644449018110 Effective search space used: 644449018110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)