BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0038.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C6.1 B3K3C6_9BACI Binding-protein-dependent transport system... 525 e-147 C0FYY8.1 C0FYY8_9FIRM Putative uncharacterized protein 427 e-118 Q2TM37.1 Q2TM37_BIFBR ABC transporter 400 e-110 Q835Y6.1 Q835Y6_ENTFA ABC transporter, permease protein 382 e-104 C4VF64.1 C4VF64_ENTFA ABC transporter, permease protein 382 e-104 >B3K3C6.1 B3K3C6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 329 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/316 (80%), Positives = 274/316 (86%) Query: 19 ALQQMGKRPIGQRIKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVID 78 A+Q GK+P+GQRIKE+ D++RQWE+QSM+IPG+IFM +FCYIPIYGLTIAFKNYTVID Sbjct: 14 AVQPTGKKPMGQRIKEFFMDYKRQWELQSMIIPGVIFMFIFCYIPIYGLTIAFKNYTVID 73 Query: 79 TLSSAPWVGLDNFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFK 138 TL SAPWVGLDNFKII+SDKYFWDSV+NTLGISFLKLAIGFVIPIIL IMIYE+ GRFK Sbjct: 74 TLDSAPWVGLDNFKIIMSDKYFWDSVVNTLGISFLKLAIGFVIPIILAIMIYEVGMGRFK 133 Query: 139 KIVQTISYLPHFLSWIVLGGMLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWIAT 198 K VQT+SYLPHFLSWIVLGGMLITWFSTSG IS+P NILLD KYWWIAT Sbjct: 134 KFVQTVSYLPHFLSWIVLGGMLITWFSTSGLFNEILLALGLISQPQNILLDPSKYWWIAT 193 Query: 199 LSDIWKEAGWGTILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILT 258 LSDIWKEAGWGTILYLA+M+KIDPTYYEAARIDGASR+RQIWNITLPNMK IISLNLILT Sbjct: 194 LSDIWKEAGWGTILYLAIMAKIDPTYYEAARIDGASRLRQIWNITLPNMKMIISLNLILT 253 Query: 259 VSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXX 318 VSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYAT Sbjct: 254 VSGLLGSNLDQTLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATAVGLGVSIISVILLV 313 Query: 319 XXNKITSKLNDNQSVL 334 NK+TSKLNDNQSVL Sbjct: 314 TANKVTSKLNDNQSVL 329 >C0FYY8.1 C0FYY8_9FIRM Putative uncharacterized protein Length = 317 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/305 (69%), Positives = 242/305 (79%), Gaps = 1/305 (0%) Query: 30 QRIKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVIDTLSSAPWVGLD 89 ++ K +V D+RRQ +Q MVIPGIIFMI+FCY+PIYGLTIAFK+YTVIDT+ SA WVG Sbjct: 14 EKAKLFVKDYRRQLPLQMMVIPGIIFMIIFCYMPIYGLTIAFKSYTVIDTIDSAKWVGWA 73 Query: 90 NFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFKKIVQTISYLPH 149 NFKI+ +DKYFW SVINTLGISFLKL IGF PIIL IMIYEL G FK+I+QTISYLPH Sbjct: 74 NFKIVATDKYFWQSVINTLGISFLKLLIGFTTPIILSIMIYELRDGPFKRIIQTISYLPH 133 Query: 150 FLSWIVLGGMLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWIATLSDIWKEAGWG 209 FLSWIVLGGM+I W ST+G + P+N LLD+GKYWWIA+LSD WKEAGWG Sbjct: 134 FLSWIVLGGMIINWLSTTGLLNQILMAVGLVDNPTNFLLDSGKYWWIASLSDTWKEAGWG 193 Query: 210 TILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILTVSGLLGSNLDQ 269 T+LYLA M+ IDPTYYEAARIDGA R+RQI +ITLP MKTIISLN ILT+SGLL SNLDQ Sbjct: 194 TVLYLATMAGIDPTYYEAARIDGAGRLRQITSITLPLMKTIISLNFILTISGLLKSNLDQ 253 Query: 270 TLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXXXXNKITSKLND 329 TLVLMNSQN+ KAEVI+SYVYRMGMTQGDFSYAT NKIT K+N+ Sbjct: 254 TLVLMNSQNQAKAEVIDSYVYRMGMTQGDFSYATAVGLGVSVVSVILLVTANKITGKINE 313 Query: 330 NQSVL 334 +SVL Sbjct: 314 -ESVL 317 >Q2TM37.1 Q2TM37_BIFBR ABC transporter Length = 327 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/305 (63%), Positives = 235/305 (77%), Gaps = 1/305 (0%) Query: 30 QRIKEWVTDFRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVIDTLSSAPWVGLD 89 R++ W F RQW++Q+M++PGIIFMIVF +IPIYGL +AFK YTV+DT+ APWVG Sbjct: 24 HRVRSWFVQFGRQWQLQAMILPGIIFMIVFNFIPIYGLVLAFKQYTVVDTIEDAPWVGWQ 83 Query: 90 NFKIILSDKYFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFKKIVQTISYLPH 149 NF+ IL D+YFW SV+NTLGISF+KL +GF++PI+L +MIYE+ FKKIVQT++YLPH Sbjct: 84 NFETILKDQYFWQSVVNTLGISFIKLTLGFLLPIVLAVMIYEIPWTPFKKIVQTLTYLPH 143 Query: 150 FLSWIVLGGMLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWIATLSDIWKEAGWG 209 F SWI+LGGMLI W ST+G + SN LLDA KYWWIA+LSD+WKEAGWG Sbjct: 144 FFSWIILGGMLINWLSTNG-LLNEILQFLGFNADSNYLLDADKYWWIASLSDVWKEAGWG 202 Query: 210 TILYLAVMSKIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILTVSGLLGSNLDQ 269 TILYLA M+ ID YEAA IDGAS+I++IWNIT+P ++ II LNLILTVSGLLGSNLDQ Sbjct: 203 TILYLATMAGIDNALYEAAEIDGASKIQRIWNITIPGIRQIIILNLILTVSGLLGSNLDQ 262 Query: 270 TLVLMNSQNREKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXXXXNKITSKLND 329 TLVLMNSQN+ KAEVINSYVYR+G+++GDFSYAT N +T K+ND Sbjct: 263 TLVLMNSQNQPKAEVINSYVYRVGLSEGDFSYATAVGLGVSIVSTILLVAVNLVTKKIND 322 Query: 330 NQSVL 334 NQSVL Sbjct: 323 NQSVL 327 >Q835Y6.1 Q835Y6_ENTFA ABC transporter, permease protein Length = 303 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/296 (62%), Positives = 228/296 (77%) Query: 39 FRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVIDTLSSAPWVGLDNFKIILSDK 98 F Q ++ MV+PG+ FMIVF YIPIYG+ IAFKNYT++DT+SSAPWVGL+NF+II+ D Sbjct: 7 FYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFRIIMEDS 66 Query: 99 YFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFKKIVQTISYLPHFLSWIVLGG 158 +FW++V NTL IS +KL +GF IPIIL +MI+E+ G KK++QTISY+PHF SWIVLGG Sbjct: 67 FFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFSWIVLGG 126 Query: 159 MLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWIATLSDIWKEAGWGTILYLAVMS 218 MLI+W ST+G +++ N LLD KYWWIA LSD+WKE GWGTILYLA MS Sbjct: 127 MLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTILYLAGMS 186 Query: 219 KIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILTVSGLLGSNLDQTLVLMNSQN 278 +IDPT+YEAARIDGAS++ QI ITLP + IISLNLIL VSGLLGSNLDQTLVLMN+QN Sbjct: 187 RIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLVLMNAQN 246 Query: 279 REKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXXXXNKITSKLNDNQSVL 334 + K+EVINS+VYRMG+TQGDFSYAT ++IT K+N+ +SV+ Sbjct: 247 QNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRSVI 302 >C4VF64.1 C4VF64_ENTFA ABC transporter, permease protein Length = 303 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/296 (62%), Positives = 228/296 (77%) Query: 39 FRRQWEIQSMVIPGIIFMIVFCYIPIYGLTIAFKNYTVIDTLSSAPWVGLDNFKIILSDK 98 F Q ++ MV+PG+ FMIVF YIPIYG+ IAFKNYT++DT+SSAPWVGL+NF+II+ D Sbjct: 7 FYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFRIIMEDS 66 Query: 99 YFWDSVINTLGISFLKLAIGFVIPIILGIMIYELNRGRFKKIVQTISYLPHFLSWIVLGG 158 +FW++V NTL IS +KL +GF IPIIL +MI+E+ G KK++QTISY+PHF SWIVLGG Sbjct: 67 FFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFSWIVLGG 126 Query: 159 MLITWFSTSGXXXXXXXXXXXISKPSNILLDAGKYWWIATLSDIWKEAGWGTILYLAVMS 218 MLI+W ST+G +++ N LLD KYWWIA LSD+WKE GWGTILYLA MS Sbjct: 127 MLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTILYLAGMS 186 Query: 219 KIDPTYYEAARIDGASRIRQIWNITLPNMKTIISLNLILTVSGLLGSNLDQTLVLMNSQN 278 +IDPT+YEAARIDGAS++ QI ITLP + IISLNLIL VSGLLGSNLDQTLVLMN+QN Sbjct: 187 RIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLVLMNAQN 246 Query: 279 REKAEVINSYVYRMGMTQGDFSYATXXXXXXXXXXXXXXXXXNKITSKLNDNQSVL 334 + K+EVINS+VYRMG+TQGDFSYAT ++IT K+N+ +SV+ Sbjct: 247 QNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNNGRSVI 302 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,763,538,754 Number of extensions: 69209216 Number of successful extensions: 250460 Number of sequences better than 1.0e-05: 3612 Number of HSP's gapped: 247471 Number of HSP's successfully gapped: 3613 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)