BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0037.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C7.1 B3K3C7_9BACI Binding-protein-dependent transport system... 442 e-122 C0FYY7.1 C0FYY7_9FIRM Putative uncharacterized protein 371 e-101 Q2TM38.1 Q2TM38_BIFBR ABC transporter 348 5e-94 Q835Y5.1 Q835Y5_ENTFA ABC transporter, permease protein 337 6e-91 C4VF65.1 C4VF65_ENTFA Protein LplC 337 6e-91 >B3K3C7.1 B3K3C7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/289 (74%), Positives = 235/289 (81%), Gaps = 1/289 (0%) Query: 3 KEDVDSRIFDAXXXXXXXXXXXXXXXXXXXXXXSSLSSGKALAEGGFIFWSKEFSLENYR 62 K D+DSRIFD SS SSG++LAEGGFIFW EFSLENY+ Sbjct: 7 KGDLDSRIFDTINIILLVTFTIIIVVPLWNVVVSSFSSGRSLAEGGFIFWPTEFSLENYQ 66 Query: 63 AVFNDNTIWQSFLVSISKTFVGVITHVFFCAMIGYGLSKRYIKGRKLYVAMGVITMFFSG 122 AVF D IW +F +S++KT +GVITHVFFCAM+GYGLSK+Y++GRK YVAMGV+TMFFSG Sbjct: 67 AVFRDANIWNAFFISVAKTVIGVITHVFFCAMVGYGLSKKYVRGRKFYVAMGVVTMFFSG 126 Query: 123 GMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVVILMNFFRNVPDSLEESAKIDGAGDWRI 182 GMIPTY+LIK LGLLNSFWVYIIPAL S+YDV+ILMNFFRNVPDSLEESAKIDG GDWRI Sbjct: 127 GMIPTYMLIKDLGLLNSFWVYIIPALLSFYDVIILMNFFRNVPDSLEESAKIDGGGDWRI 186 Query: 183 FLKIFIPLSMPAMATIALFNGVGQWNDFMTTKLYITNQALYPLQMKLYEIIVQSQTQSMQ 242 FL IFIPLSMPAMATIALFNGVGQWNDFMTTKLYIT+Q+LYPLQM LYEIIVQSQTQSMQ Sbjct: 187 FLSIFIPLSMPAMATIALFNGVGQWNDFMTTKLYITDQSLYPLQMMLYEIIVQSQTQSMQ 246 Query: 243 NIGGSAVIETTTKGVQLAXXXXXXXXXXXXYPLLQRYFISGMMLGAVKE 291 NI GS I+TTTKGVQLA YP+LQRYFISGMMLGAVKE Sbjct: 247 NI-GSVAIQTTTKGVQLATIVVTTLPIVVMYPILQRYFISGMMLGAVKE 294 >C0FYY7.1 C0FYY7_9FIRM Putative uncharacterized protein Length = 277 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/256 (68%), Positives = 211/256 (82%), Gaps = 1/256 (0%) Query: 36 SSLSSGKALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMI 95 SS S ALAEGGFIF+ KE+SL+NYRAVF D +IW++F +S++KT +GV+THVFFCAM+ Sbjct: 23 SSFSGSTALAEGGFIFFPKEWSLDNYRAVFKDTSIWKAFFISVAKTVIGVVTHVFFCAMV 82 Query: 96 GYGLSKRYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVV 155 + LSK+ ++GRKLY MG+ITMFFSGGMIPTYLL+K LGLLN+F VYI+P LFSYYDVV Sbjct: 83 AFALSKKDLRGRKLYTVMGIITMFFSGGMIPTYLLMKQLGLLNNFMVYILPQLFSYYDVV 142 Query: 156 ILMNFFRNVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKL 215 ILMNFFR +P SLEESA+IDGAG W+IFL I +PLS PA+ATIALFNGV QWNDFMT KL Sbjct: 143 ILMNFFRQIPASLEESAQIDGAGVWKIFLSIAMPLSKPALATIALFNGVYQWNDFMTAKL 202 Query: 216 YITNQALYPLQMKLYEIIVQSQTQSMQNIGGSAVIETTTKGVQLAXXXXXXXXXXXXYPL 275 Y+TN+ LYP+QMKLYEIIVQ Q QSM +IG A + TT+KG+QLA YPL Sbjct: 203 YMTNKDLYPVQMKLYEIIVQQQAQSMNSIGNVA-LSTTSKGIQLATIVVTTVPIIIIYPL 261 Query: 276 LQRYFISGMMLGAVKE 291 LQ++F+SGMMLGAVKE Sbjct: 262 LQKHFVSGMMLGAVKE 277 >Q2TM38.1 Q2TM38_BIFBR ABC transporter Length = 310 Score = 348 bits (892), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 164/255 (64%), Positives = 202/255 (79%) Query: 36 SSLSSGKALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMI 95 SS ++ ++L+E FIFW K SL+NY AVF+D+ +WQS +S+S+T VGVI H FCA+ Sbjct: 55 SSFATSESLSENDFIFWPKALSLDNYAAVFSDDGLWQSLFISVSRTAVGVIAHTMFCAVF 114 Query: 96 GYGLSKRYIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVV 155 Y LSK Y+KGR +Y AMG+ITMFFSGGMIPTYLLIKSLGLL+SFWVYIIP LFSYYDV+ Sbjct: 115 AYPLSKAYLKGRSVYSAMGIITMFFSGGMIPTYLLIKSLGLLDSFWVYIIPGLFSYYDVI 174 Query: 156 ILMNFFRNVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKL 215 ILMNFFR VP+SL +SA+IDGAG+ R+F I +PLS PA+ATIALF+GV QWNDFMTTKL Sbjct: 175 ILMNFFRQVPNSLIDSARIDGAGELRVFSSIILPLSKPALATIALFHGVAQWNDFMTTKL 234 Query: 216 YITNQALYPLQMKLYEIIVQSQTQSMQNIGGSAVIETTTKGVQLAXXXXXXXXXXXXYPL 275 YI N+ALYPLQM+LYEIIV+SQ + GS +++TTT+G++LA YP Sbjct: 235 YINNEALYPLQMRLYEIIVRSQASAQMGTVGSLMVDTTTRGMRLATIIITIAPILILYPF 294 Query: 276 LQRYFISGMMLGAVK 290 +QRYF+SG MLGAVK Sbjct: 295 VQRYFVSGTMLGAVK 309 >Q835Y5.1 Q835Y5_ENTFA ABC transporter, permease protein Length = 293 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 162/250 (64%), Positives = 195/250 (78%), Gaps = 1/250 (0%) Query: 43 ALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMIGYGLSKR 102 LA G + W K F+LENYR VF+D++I ++FL+S+ KT +G TH FCA++ YGLSK Sbjct: 44 GLAGKGLVLWPKGFTLENYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKS 103 Query: 103 YIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVVILMNFFR 162 + GR +Y MGVITM+F GGMIPTYLLIKSLGLL++FWVYIIPALFSYYDVVILMNFFR Sbjct: 104 RLVGRNIYTTMGVITMYFGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFR 163 Query: 163 NVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKLYITNQAL 222 +P SLEESAKIDGA +++IF KIF+PL+ PA+ATI LFNGVGQWNDFMTTKLYIT + L Sbjct: 164 EIPPSLEESAKIDGASEFQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYL 223 Query: 223 YPLQMKLYEIIVQSQTQSMQNIGGS-AVIETTTKGVQLAXXXXXXXXXXXXYPLLQRYFI 281 YPLQMK+YEIIVQS +M G + V++ TT+GVQLA YPLLQ++FI Sbjct: 224 YPLQMKIYEIIVQSNLSTMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFI 283 Query: 282 SGMMLGAVKE 291 GMM GAVKE Sbjct: 284 GGMMAGAVKE 293 >C4VF65.1 C4VF65_ENTFA Protein LplC Length = 293 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 162/250 (64%), Positives = 195/250 (78%), Gaps = 1/250 (0%) Query: 43 ALAEGGFIFWSKEFSLENYRAVFNDNTIWQSFLVSISKTFVGVITHVFFCAMIGYGLSKR 102 LA G + W K F+LENYR VF+D++I ++FL+S+ KT +G TH FCA++ YGLSK Sbjct: 44 GLAGKGLVLWPKGFTLENYRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKS 103 Query: 103 YIKGRKLYVAMGVITMFFSGGMIPTYLLIKSLGLLNSFWVYIIPALFSYYDVVILMNFFR 162 + GR +Y MGVITM+F GGMIPTYLLIKSLGLL++FWVYIIPALFSYYDVVILMNFFR Sbjct: 104 RLVGRNIYTTMGVITMYFGGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFR 163 Query: 163 NVPDSLEESAKIDGAGDWRIFLKIFIPLSMPAMATIALFNGVGQWNDFMTTKLYITNQAL 222 +P SLEESAKIDGA +++IF KIF+PL+ PA+ATI LFNGVGQWNDFMTTKLYIT + L Sbjct: 164 EIPPSLEESAKIDGASEFQIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYL 223 Query: 223 YPLQMKLYEIIVQSQTQSMQNIGGS-AVIETTTKGVQLAXXXXXXXXXXXXYPLLQRYFI 281 YPLQMK+YEIIVQS +M G + V++ TT+GVQLA YPLLQ++FI Sbjct: 224 YPLQMKIYEIIVQSNLSTMTESGSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFI 283 Query: 282 SGMMLGAVKE 291 GMM GAVKE Sbjct: 284 GGMMAGAVKE 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,430,296,058 Number of extensions: 54550356 Number of successful extensions: 200865 Number of sequences better than 1.0e-05: 5401 Number of HSP's gapped: 196166 Number of HSP's successfully gapped: 5401 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)