BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0036.p (546 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C8.1 B3K3C8_9BACI Extracellular solute-binding protein family 1 726 0.0 C0FYY6.1 C0FYY6_9FIRM Putative uncharacterized protein 677 0.0 Q2TM39.1 Q2TM39_BIFBR ABC transporter 583 e-164 C4VF66.1 C4VF66_ENTFA ABC transporter 580 e-163 Q835Y4.1 Q835Y4_ENTFA ABC transporter, substrate-binding protein... 580 e-163 >B3K3C8.1 B3K3C8_9BACI Extracellular solute-binding protein family 1 Length = 510 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/446 (79%), Positives = 381/446 (85%), Gaps = 1/446 (0%) Query: 1 MNKTFGKKGLKLCTVLMAAVLVMPXXXXXXXXXXXXXXLPSADDRYTVDAETPAWKLDKK 60 MNK GK+GL L T LMA VLV+ S +DRYT D E PAW+LDKK Sbjct: 3 MNKAMGKRGLTLLTALMAVVLVVSGCGGSGGSGSKKENWVSIEDRYTPDPEKPAWQLDKK 62 Query: 61 EETTELTWYVNADWWNTDFGKDVVTKKIKEDLNVNIKFITGDDTKLNTFFAGGDMPDLLT 120 EETTELTWYVNADWWNTDFGKDVVTKKIKEDLN+NIKFITGDDTKLNTFFAGGDMPDL+T Sbjct: 63 EETTELTWYVNADWWNTDFGKDVVTKKIKEDLNINIKFITGDDTKLNTFFAGGDMPDLIT 122 Query: 121 IFDSNSPVVQKAATWALPLNDLAEKYDPYFNXXXXPADTLNWFQLVDGKTYGYPNYSNTQ 180 FDSNSPVVQKAATWALPLNDLAEKYDPYFN DTLNWFQL DGKTYGYPNYSNTQ Sbjct: 123 TFDSNSPVVQKAATWALPLNDLAEKYDPYFNKVAA-QDTLNWFQLKDGKTYGYPNYSNTQ 181 Query: 181 ADYDSGNIPAKTAFVIRKDVYEALGSPAAGTPEEFKNVMGQIKAKFPELIPFGFNSIGEG 240 DYDSGNIPAKTAF+IRKDVYEA+G PA GTPEEF+ + IK +FP LIP GFNSIGEG Sbjct: 182 EDYDSGNIPAKTAFIIRKDVYEAIGKPAMGTPEEFQAALADIKKQFPALIPLGFNSIGEG 241 Query: 241 TGSLGDVLQDFLGVPMETTDGGFYNRNLDEDYLAWLKTINAVYRGGAISDDSFADDGTAF 300 TGSLGDVLQDF+GVP+E +GGFYNRNLDEDYL W+K N VYR GAISDDSFADDGTAF Sbjct: 242 TGSLGDVLQDFIGVPLEDENGGFYNRNLDEDYLTWVKAFNTVYRDGAISDDSFADDGTAF 301 Query: 301 EEKVKSGKYATMLLDGTPQQGGNLQIYMSANPGKEYIAIDGPQSTVGHAPTLNQSGITGW 360 EEKVK+GKYAT++LDGTPQQGGNLQ + S N GKEYIAIDGPQSTVGHAPTLNQSGITGW Sbjct: 302 EEKVKAGKYATIMLDGTPQQGGNLQSFYSNNKGKEYIAIDGPQSTVGHAPTLNQSGITGW 361 Query: 361 MISFITKKCKDPAKAMQIFTYLLSDEGQKLMNYGIEGETYQVNANGKVELLPAVKDLQLN 420 MISFITK+ DPAK++Q+FTYLLS+EGQ LMNYGIEGETYQVNA+G VE LP VK+LQ+N Sbjct: 362 MISFITKENADPAKSIQLFTYLLSEEGQMLMNYGIEGETYQVNADGTVEFLPDVKELQMN 421 Query: 421 NADKFKKDYRLGEFMFFGHDRDKALS 446 N D FKKDYR+GEFMFFGHDR KALS Sbjct: 422 NPDTFKKDYRMGEFMFFGHDRHKALS 447 >C0FYY6.1 C0FYY6_9FIRM Putative uncharacterized protein Length = 555 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/489 (65%), Positives = 393/489 (80%), Gaps = 3/489 (0%) Query: 45 RYTVDAETPAWKLDKKEETTELTWYVNADWWNTDFGKDVVTKKIKEDLNVNIKFITGDDT 104 RYT+DA+TPAWKLD KE+TT LTWYVNADWWNT++G DVVTK+I++D+NVNI F+ GDDT Sbjct: 56 RYTLDADTPAWKLDTKEDTT-LTWYVNADWWNTEWGNDVVTKQIQKDMNVNIDFVVGDDT 114 Query: 105 KLNTFFAGGDMPDLLTIFDSNSPVVQKAATWALPLNDLAEKYDPYFNXXXXPADTLNWFQ 164 KLNTFFAGGDMPD++TIFD++S V QKA TWA L DLA+ YDPYF A TL+WF Sbjct: 115 KLNTFFAGGDMPDIITIFDASSSVAQKADTWAYALQDLADNYDPYF-YKVASAQTLSWFA 173 Query: 165 LVDGKTYGYPNYSNTQADYDSGNIPAKTAFVIRKDVYEALGSPAAGTPEEFKNVMGQIKA 224 + DGKTYGYP YSNTQ DYDSG I AKTAFVIR DVYEALG P+ GT EEF +V+ QIK Sbjct: 174 MDDGKTYGYPGYSNTQEDYDSGEIYAKTAFVIRNDVYEALGKPSMGTQEEFLDVLNQIKE 233 Query: 225 KFPELIPFGFNSI-GEGTGSLGDVLQDFLGVPMETTDGGFYNRNLDEDYLAWLKTINAVY 283 +FP+LIP GFN+ +GT SLGD LQDFLG P+ D FY+RN+DEDYL+W+KT+N Y Sbjct: 234 QFPDLIPLGFNNFETDGTSSLGDTLQDFLGTPIVNDDNTFYDRNMDEDYLSWIKTLNQAY 293 Query: 284 RGGAISDDSFADDGTAFEEKVKSGKYATMLLDGTPQQGGNLQIYMSANPGKEYIAIDGPQ 343 + G ISDDSF DD TA++EK GKYA +++DGTPQQ G L + ++NP YIAIDGP+ Sbjct: 294 KNGCISDDSFTDDNTAWQEKESIGKYACIMMDGTPQQAGFLTTFATSNPDAAYIAIDGPK 353 Query: 344 STVGHAPTLNQSGITGWMISFITKKCKDPAKAMQIFTYLLSDEGQKLMNYGIEGETYQVN 403 ST G+ P LNQ+GI+GWMI++++K CKDPAKA+Q++TYLLSDEGQ L NYG+EGETY +N Sbjct: 354 STAGYEPKLNQAGISGWMITYVSKTCKDPAKAIQLYTYLLSDEGQILTNYGVEGETYTIN 413 Query: 404 ANGKVELLPAVKDLQLNNADKFKKDYRLGEFMFFGHDRDKALSEDAFPESIKQMQEWGKG 463 A+GK EL A K+LQ N+ D+FKK+ RLGEF+ FGHDR K+LS+DA+P+SIKQMQEWG G Sbjct: 414 ADGKYELTDAAKELQANDNDRFKKEMRLGEFIPFGHDRYKSLSDDAYPDSIKQMQEWGIG 473 Query: 464 KLKPHFILENINPDQGTPEARALSAINTKWNTTMVSMLRSKDDATFDSLLADYKTFLDNN 523 KL PHFILEN +P+ G+ EARA SAI T W TT+V M+R+ DDA FDS+L Y+ F + N Sbjct: 474 KLYPHFILENTDPETGSAEARAYSAIKTNWATTLVGMIRANDDAEFDSILESYRQFREEN 533 Query: 524 NWDKIVEIR 532 +WD IV++R Sbjct: 534 DWDAIVKVR 542 >Q2TM39.1 Q2TM39_BIFBR ABC transporter Length = 541 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 279/490 (56%), Positives = 368/490 (75%), Gaps = 3/490 (0%) Query: 43 DDRYTVDAETPAWKLDKKEETTELTWYVNADWWNTDFGKDVVTKKIKEDLNVNIKFITGD 102 D Y V A+TPAWKLDK ++T +LTWYVNADWWN +G+D+VTK+IKEDLN++++FITGD Sbjct: 42 DPSYEVSADTPAWKLDKTKDT-KLTWYVNADWWNKSWGEDLVTKQIKEDLNLDVEFITGD 100 Query: 103 DTKLNTFFAGGDMPDLLTIFDSNSPVVQKAATWALPLNDLAEKYDPYFNXXXXPADTLNW 162 +TKLNTFFA GDMPDL+TIFDS+S V Q A WALPL DLA+KYDPYF TL+W Sbjct: 101 NTKLNTFFASGDMPDLITIFDSSSQVAQTANKWALPLQDLAKKYDPYFTKVAQ-KQTLDW 159 Query: 163 FQLVDGKTYGYPNYSNTQADYDSGNIPAKTAFVIRKDVYEALGSPAAGTPEEFKNVMGQI 222 ++L DGKTYGYP+YSNT DY+ G IP AF+IRKDV +A+G TPE F + M I Sbjct: 160 YKLKDGKTYGYPSYSNTSQDYEDGTIPPTDAFIIRKDVLDAIGDVDFKTPEGFVSAMKTI 219 Query: 223 KAKFPELIPFGFNSIGEGTGSLGDVLQDFLGVPMETTDGGFYNRNLDEDYLAWLKTINAV 282 K KFP+L+PFGFNS SL LQ+ LGVP+ DG FY RNLDEDY+ WLK + V Sbjct: 220 KEKFPDLVPFGFNSFDASNSSLDATLQNMLGVPI-IKDGKFYERNLDEDYVTWLKALRQV 278 Query: 283 YRGGAISDDSFADDGTAFEEKVKSGKYATMLLDGTPQQGGNLQIYMSANPGKEYIAIDGP 342 ++ G ISDDSFADD +EKV SGKYATMLL Q+G LQ +MS+NPGKEY+A+D Sbjct: 279 HQDGNISDDSFADDEETLKEKVSSGKYATMLLQAFHQKGTELQTWMSSNPGKEYVAVDAM 338 Query: 343 QSTVGHAPTLNQSGITGWMISFITKKCKDPAKAMQIFTYLLSDEGQKLMNYGIEGETYQV 402 +S G+ PTL+Q+G++GW I++I+KK K+PAKAMQ++TYLL D GQ L+N+GIEG+TY Sbjct: 339 ESAEGNEPTLSQTGLSGWTITYISKKTKNPAKAMQLYTYLLDDPGQYLVNFGIEGKTYTK 398 Query: 403 NANGKVELLPAVKDLQLNNADKFKKDYRLGEFMFFGHDRDKALSEDAFPESIKQMQEWGK 462 N++G V +++ N +KF+K++R+GEF+ F HDR KAL++D++ ++I+QMQ+WG+ Sbjct: 399 NSDGTVSWTDEANEVRANEPEKFQKEWRIGEFVLFSHDRYKALNKDSYVQAIRQMQDWGR 458 Query: 463 GKLKPHFILENINPDQGTPEARALSAINTKWNTTMVSMLRSKDDATFDSLLADYKTFLDN 522 LKP F +ENI+PD TP++R+LSAINT W+TT+VSM+R++ + FD LL Y+ F + Sbjct: 459 DYLKPQFEIENISPDANTPQSRSLSAINTNWSTTLVSMIRAESEKKFDELLTTYEKFEKD 518 Query: 523 NNWDKIVEIR 532 N D+I +IR Sbjct: 519 NGIDQINKIR 528 >C4VF66.1 C4VF66_ENTFA ABC transporter Length = 532 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 280/493 (56%), Positives = 350/493 (70%), Gaps = 3/493 (0%) Query: 41 SADDRYTVDAETPAWKLDKKEETTELTWYVNADWWNTDFGKDVVTKKIKEDLNVNIKFIT 100 S DRY +D +TPAWKLDKK+E T++ WY+N+DW FGKDV T +IK+DLNV+I+FI+ Sbjct: 32 SIKDRYELDEKTPAWKLDKKKEPTKIKWYINSDWTALPFGKDVTTAQIKKDLNVDIEFIS 91 Query: 101 GDDTKLNTFFAGGDMPDLLTIFDSNSPVVQKAATWALPLNDLAEKYDPYFNXXXXPADTL 160 GDD+KLN + GDMPD++T+ + KA +WA LNDLA+KYDPY DT Sbjct: 92 GDDSKLNAMISSGDMPDIVTLTEKTGQAALKADSWAYSLNDLAKKYDPYL-MKVVNQDTF 150 Query: 161 NWFQLVDGKTYGYPNYSNTQADYDSGNIPAKTAFVIRKDVYEALGSPAAGTPEEFKNVMG 220 W+ L DGKTYGYPNYSNT+ADY+SGNIP FVIR+DVY ALG P TPE F+ VM Sbjct: 151 KWYALEDGKTYGYPNYSNTKADYESGNIPVNDNFVIREDVYNALGKPDVSTPENFEKVMQ 210 Query: 221 QIKAKFPELIPFGFNSIGEGTGSLGDVLQDFLGVPMETTDGGFYNRNLDEDYLAWLKTIN 280 QIK K+PE+ P GF ++G+G G D LQDFLGVP+E +G +Y+RNLD++YL WLKT N Sbjct: 211 QIKEKYPEMTPMGFTTVGDGAGPFLDKLQDFLGVPLEDKNGKYYDRNLDKEYLEWLKTFN 270 Query: 281 AVYRGGAISDDSFADDGTAFEEKVKSGKYATMLLDGTPQQGGNLQIYMSANPGKEYIAID 340 VYR G ISDDSF DDG F+EKVK G YATML+ GT QGGN +M + G YIAID Sbjct: 271 DVYRAGNISDDSFTDDGATFDEKVKQGNYATMLVAGTSGQGGNFTEFMKKS-GTRYIAID 329 Query: 341 GPQSTVGHAPTLNQSGITGWMISFITKKCKDPAKAMQIFTYLLSDEGQKLMNYGIEGETY 400 GP ST G PTLNQ+GI+GW+ ++ITK KDPAK Q+FTYL+ + GQ L YG+EG TY Sbjct: 330 GPSSTSGRKPTLNQTGISGWLSNYITKDAKDPAKVTQLFTYLIDEPGQILTKYGVEGVTY 389 Query: 401 QVNANGKVELLPAVKDLQLNNADKFKKDYRLGEFMFFGHDRDKALSEDAFPESIKQMQEW 460 N GK++ LP VK L+ + D + K Y + F++F +DR L ++ QMQEW Sbjct: 390 AYNDQGKIDYLPEVKKLEQTDNDAYNKKYGISRFLYFNNDRVNKLKV-PMESALTQMQEW 448 Query: 461 GKGKLKPHFILENINPDQGTPEARALSAINTKWNTTMVSMLRSKDDATFDSLLADYKTFL 520 GKGKL PHF++ENINPD GTPEARA AI TK NTT++SM+R+KDD FD L DYK FL Sbjct: 449 GKGKLVPHFVIENINPDAGTPEARANEAIETKLNTTVISMIRAKDDTAFDKSLEDYKAFL 508 Query: 521 DNNNWDKIVEIRT 533 +N WD I +I++ Sbjct: 509 KSNKWDAIEKIKS 521 >Q835Y4.1 Q835Y4_ENTFA ABC transporter, substrate-binding protein, putative Length = 532 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 280/493 (56%), Positives = 350/493 (70%), Gaps = 3/493 (0%) Query: 41 SADDRYTVDAETPAWKLDKKEETTELTWYVNADWWNTDFGKDVVTKKIKEDLNVNIKFIT 100 S DRY +D +TPAWKLDKK+E T++ WY+N+DW FGKDV T +IK+DLNV+I+FI+ Sbjct: 32 SIKDRYELDEKTPAWKLDKKKEPTKIKWYINSDWTALPFGKDVTTAQIKKDLNVDIEFIS 91 Query: 101 GDDTKLNTFFAGGDMPDLLTIFDSNSPVVQKAATWALPLNDLAEKYDPYFNXXXXPADTL 160 GDD+KLN + GDMPD++T+ + KA +WA LNDLA+KYDPY DT Sbjct: 92 GDDSKLNAMISSGDMPDIVTLTEKTGQAALKADSWAYSLNDLAKKYDPYL-MKVVNQDTF 150 Query: 161 NWFQLVDGKTYGYPNYSNTQADYDSGNIPAKTAFVIRKDVYEALGSPAAGTPEEFKNVMG 220 W+ L DGKTYGYPNYSNT+ADY+SGNIP FVIR+DVY ALG P TPE F+ VM Sbjct: 151 KWYALEDGKTYGYPNYSNTKADYESGNIPVNDNFVIREDVYNALGKPDVSTPENFEKVMQ 210 Query: 221 QIKAKFPELIPFGFNSIGEGTGSLGDVLQDFLGVPMETTDGGFYNRNLDEDYLAWLKTIN 280 QIK K+PE+ P GF ++G+G G D LQDFLGVP+E +G +Y+RNLD++YL WLKT N Sbjct: 211 QIKEKYPEMTPMGFTTVGDGAGPFLDKLQDFLGVPLEDKNGKYYDRNLDKEYLEWLKTFN 270 Query: 281 AVYRGGAISDDSFADDGTAFEEKVKSGKYATMLLDGTPQQGGNLQIYMSANPGKEYIAID 340 VYR G ISDDSF DDG F+EKVK G YATML+ GT QGGN +M + G YIAID Sbjct: 271 DVYRAGNISDDSFTDDGATFDEKVKQGNYATMLVAGTSGQGGNFTEFMKKS-GTRYIAID 329 Query: 341 GPQSTVGHAPTLNQSGITGWMISFITKKCKDPAKAMQIFTYLLSDEGQKLMNYGIEGETY 400 GP ST G PTLNQ+GI+GW+ ++ITK KDPAK Q+FTYL+ + GQ L YG+EG TY Sbjct: 330 GPSSTSGRKPTLNQTGISGWLSNYITKDAKDPAKVTQLFTYLIDEPGQILTKYGVEGVTY 389 Query: 401 QVNANGKVELLPAVKDLQLNNADKFKKDYRLGEFMFFGHDRDKALSEDAFPESIKQMQEW 460 N GK++ LP VK L+ + D + K Y + F++F +DR L ++ QMQEW Sbjct: 390 AYNDQGKIDYLPEVKKLEQTDNDAYNKKYGISRFLYFNNDRVNKLKV-PMESALTQMQEW 448 Query: 461 GKGKLKPHFILENINPDQGTPEARALSAINTKWNTTMVSMLRSKDDATFDSLLADYKTFL 520 GKGKL PHF++ENINPD GTPEARA AI TK NTT++SM+R+KDD FD L DYK FL Sbjct: 449 GKGKLVPHFVIENINPDAGTPEARANEAIETKLNTTVISMIRAKDDKAFDKSLEDYKAFL 508 Query: 521 DNNNWDKIVEIRT 533 +N WD I +I++ Sbjct: 509 KSNKWDAIEKIKS 521 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,426,609,212 Number of extensions: 156996437 Number of successful extensions: 325238 Number of sequences better than 1.0e-05: 82 Number of HSP's gapped: 325113 Number of HSP's successfully gapped: 82 Length of query: 546 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 405 Effective length of database: 1,732,333,088 Effective search space: 701594900640 Effective search space used: 701594900640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 134 (56.2 bits)