BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0033.p
         (74 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O31834.1 YOZG_BACSU Uncharacterized HTH-type transcriptional reg...   140   3e-32
Q65KD4.1 Q65KD4_BACLD YozG                                            139   8e-32
C2ZPG8.1 C2ZPG8_BACCE Putative uncharacterized protein                137   3e-31
C2Z7X0.1 C2Z7X0_BACCE Putative uncharacterized protein                137   3e-31
C3BLN1.1 C3BLN1_9BACI Putative uncharacterized protein                136   6e-31

>O31834.1 YOZG_BACSU Uncharacterized HTH-type transcriptional regulator
          yozG
          Length = 84

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/71 (97%), Positives = 71/71 (100%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKA+RLSTLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAIRLSTLEAICKALECQPG 60

Query: 64 DILEYRSDEET 74
          DILEYRSDE+T
Sbjct: 61 DILEYRSDEDT 71


>Q65KD4.1 Q65KD4_BACLD YozG
          Length = 73

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/71 (95%), Positives = 71/71 (100%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSE+VGITMANLSILKNGKAKA+RLSTLEAICKALECQPG
Sbjct: 1  MAIIINIDVMLAKRKMSVTELSEKVGITMANLSILKNGKAKAIRLSTLEAICKALECQPG 60

Query: 64 DILEYRSDEET 74
          DILEYRSDE+T
Sbjct: 61 DILEYRSDEDT 71


>C2ZPG8.1 C2ZPG8_BACCE Putative uncharacterized protein
          Length = 75

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/71 (95%), Positives = 70/71 (98%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKAL+CQPG
Sbjct: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALDCQPG 63

Query: 64 DILEYRSDEET 74
          DILEY+SDE T
Sbjct: 64 DILEYKSDEYT 74


>C2Z7X0.1 C2Z7X0_BACCE Putative uncharacterized protein
          Length = 75

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/71 (95%), Positives = 70/71 (98%)

Query: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALECQPG 63
          MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKAL+CQPG
Sbjct: 4  MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALDCQPG 63

Query: 64 DILEYRSDEET 74
          DILEY+SDE T
Sbjct: 64 DILEYKSDEYT 74


>C3BLN1.1 C3BLN1_9BACI Putative uncharacterized protein
          Length = 75

 Score =  136 bits (342), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)

Query: 1  VKTMAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRLSTLEAICKALEC 60
          ++ MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVR STLEAICK L+C
Sbjct: 1  MENMAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAVRFSTLEAICKTLDC 60

Query: 61 QPGDILEYRSDEET 74
          QPGDILEY+SDE+T
Sbjct: 61 QPGDILEYKSDEDT 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 328,665,106
Number of extensions: 8318995
Number of successful extensions: 32473
Number of sequences better than 1.0e-05: 495
Number of HSP's gapped: 32538
Number of HSP's successfully gapped: 495
Length of query: 74
Length of database: 3,060,696,203
Length adjustment: 45
Effective length of query: 29
Effective length of database: 2,636,750,528
Effective search space: 76465765312
Effective search space used: 76465765312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)