BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0032.p (163 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65KD3.1 Q65KD3_BACLD YoaS 226 5e-58 B3KD80.1 B3KD80_9BACI YoaS 225 9e-58 B3Z4X3.1 B3Z4X3_BACCE Putative uncharacterized protein 207 2e-52 A0RFH5.1 A0RFH5_BACAH Putative uncharacterized protein 207 3e-52 Q639W0.1 Q639W0_BACCZ Putative uncharacterized protein yoaS 206 5e-52 >Q65KD3.1 Q65KD3_BACLD YoaS Length = 160 Score = 226 bits (576), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 134/160 (83%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M+RG+TLFLK AVIL+GIPVLALCIF VP IA+FAAELYP ++++KYLV+ DLYA+A+PF Sbjct: 1 MKRGSTLFLKIAVILIGIPVLALCIFFVPEIANFAAELYPGISYLKYLVYADLYAAAIPF 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQAF+LL YID+NKAFSELSVR LKNIKYCAI IS L+ AG+PLFYL+AE DDAPG Sbjct: 61 YFALYQAFKLLSYIDQNKAFSELSVRALKNIKYCAITISILFAAGMPLFYLIAEMDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 II+IGLV+IFAS+VIAVFAAV NDLTV Sbjct: 121 IILIGLVLIFASMVIAVFAAVLQRLLQEAIDIKSENDLTV 160 >B3KD80.1 B3KD80_9BACI YoaS Length = 160 Score = 225 bits (574), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 114/160 (71%), Positives = 132/160 (82%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M++ +TLFLK AVIL+GIP+LALCIF VP IA+FAAELYPDM++IKYLVFID YA+A+PF Sbjct: 1 MKQVSTLFLKVAVILIGIPILALCIFLVPEIANFAAELYPDMSYIKYLVFIDFYAAAIPF 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQAF+LL YID+NKAFSE SVR LK IKYCAI IS L+V GLPLFYL+AEKDDAPG Sbjct: 61 YYALYQAFKLLSYIDKNKAFSEWSVRALKIIKYCAITISSLFVVGLPLFYLVAEKDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 II+IGLV+IFAS+VIAVFAAV NDL + Sbjct: 121 IILIGLVLIFASMVIAVFAAVLQRLLQEAIDIKSENDLII 160 >B3Z4X3.1 B3Z4X3_BACCE Putative uncharacterized protein Length = 160 Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 112/160 (70%), Positives = 133/160 (83%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M++G+TLFLK AVILMGIPVLA+CIF VP I +FAAELYP+M +IKYLVFI+LYA+A+P+ Sbjct: 1 MKQGSTLFLKTAVILMGIPVLAMCIFLVPNIGNFAAELYPEMAYIKYLVFINLYATAIPY 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQ F+LL YID+N AFSELSV+ LKNIKY A+VIS LYV G+PLFYL+AE+DDAPG Sbjct: 61 YFALYQTFKLLNYIDKNNAFSELSVKALKNIKYSALVISVLYVLGMPLFYLVAERDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 IIVIG++IIFAS+VIAVFAAV NDLTV Sbjct: 121 IIVIGMIIIFASMVIAVFAAVLQRLLKDAIDIKSENDLTV 160 >A0RFH5.1 A0RFH5_BACAH Putative uncharacterized protein Length = 163 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/161 (68%), Positives = 133/161 (82%) Query: 3 FMQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVP 62 FM++G+TLFLK AVILMGIP+LA+CIF VP I +FAAELYP+M +IKYLVFI+LYA+A+P Sbjct: 3 FMKQGSTLFLKTAVILMGIPILAMCIFLVPNIGNFAAELYPEMAYIKYLVFINLYATAIP 62 Query: 63 FYIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAP 122 +Y ALYQ F+LL YID+N AFSELSV+ LKNIKY A+ IS LYV G+PLFYL+AE+DDAP Sbjct: 63 YYFALYQTFKLLNYIDKNNAFSELSVKALKNIKYSALAISVLYVLGMPLFYLVAERDDAP 122 Query: 123 GIIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 GIIVIG++IIFAS+VIAVFAAV NDLTV Sbjct: 123 GIIVIGMIIIFASMVIAVFAAVLQRLLKDAIDIKSENDLTV 163 >Q639W0.1 Q639W0_BACCZ Putative uncharacterized protein yoaS Length = 160 Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 110/160 (68%), Positives = 132/160 (82%) Query: 4 MQRGTTLFLKAAVILMGIPVLALCIFAVPAIADFAAELYPDMTFIKYLVFIDLYASAVPF 63 M++G+TLFLK AVILMGIPVLA+CIF VP I +FAAELYP+M +IKYLVFI+LYA+A+P+ Sbjct: 1 MKQGSTLFLKTAVILMGIPVLAMCIFLVPKIGNFAAELYPEMAYIKYLVFINLYATAIPY 60 Query: 64 YIALYQAFRLLGYIDRNKAFSELSVRVLKNIKYCAIVISGLYVAGLPLFYLMAEKDDAPG 123 Y ALYQ F+LL YID+N AFSELSV+ LKNIKY A+ IS LYV G+PLFYL+AE+DDAPG Sbjct: 61 YFALYQTFKLLNYIDKNNAFSELSVKALKNIKYSALAISVLYVLGMPLFYLVAERDDAPG 120 Query: 124 IIVIGLVIIFASLVIAVFAAVXXXXXXXXXXXXXXNDLTV 163 II+IG++IIFAS+VIAVFAAV NDLTV Sbjct: 121 IIIIGMIIIFASMVIAVFAAVLQRLLKDAIDIKSENDLTV 160 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.335 0.148 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 772,513,687 Number of extensions: 28154099 Number of successful extensions: 120723 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 120667 Number of HSP's successfully gapped: 166 Length of query: 163 Length of database: 3,060,696,203 Length adjustment: 123 Effective length of query: 40 Effective length of database: 1,901,911,358 Effective search space: 76076454320 Effective search space used: 76076454320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 125 (52.8 bits)