BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0027.p (307 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ92.1 B3KJ92_9BACI Binding-protein-dependent transport system... 470 e-131 B1D5F4.1 B1D5F4_9BACL Binding-protein-dependent transport system... 456 e-126 B3K659.1 B3K659_9BACI Binding-protein-dependent transport system... 305 2e-81 Q030Q2.1 Q030Q2_LACLS ABC-type sugar transport system, permease ... 301 6e-80 B1D744.1 B1D744_9BACL Binding-protein-dependent transport system... 293 1e-77 >B3KJ92.1 B3KJ92_9BACI Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/308 (73%), Positives = 261/308 (84%), Gaps = 3/308 (0%) Query: 1 MGVLQPAAQEKTG-KIKNNRTSDAVMEFVMYVIAAVXXXXXXXXXXXXXXASFSDPSAVA 59 MGV++ +EKT + +N R+SD V+E +YV A + ASFS+P+AVA Sbjct: 1 MGVVE--IREKTAPRQRNTRSSDRVLEIGLYVFAVLMLIVLIYPLYFIIIASFSEPAAVA 58 Query: 60 GGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISAAYALSRKDLT 119 GQVWL+PK FTL GY+ELL+H NIW GY NTI+YT+VGT IGL VNISAAYALSRKDL Sbjct: 59 NGQVWLWPKDFTLAGYQELLKHSNIWIGYRNTIVYTIVGTAIGLVVNISAAYALSRKDLV 118 Query: 120 GRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNIIVARTFFQTSI 179 GRKYISL FIFTMFFNGGLIPTF+TIRDFQLYDTFLVMVLPFSV +NIIVARTFFQ+SI Sbjct: 119 GRKYISLLFIFTMFFNGGLIPTFMTIRDFQLYDTFLVMVLPFSVAAFNIIVARTFFQSSI 178 Query: 180 PGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNALIYLKNPDMYP 239 P DLWEAAQ+DGCGNLRYF +V+PLSKA+++V+ LW AVG+WNSYFNALIYLK+ ++YP Sbjct: 179 PEDLWEAAQLDGCGNLRYFVTIVIPLSKAVISVIALWTAVGHWNSYFNALIYLKDSNLYP 238 Query: 240 LQLILRNILITNQMQSGMGTGEAAQIALRLANMMRYSVIIVATVPIMCVYPFVQKYFNQG 299 LQLILRNIL+TNQMQS MGTGEAA IALRLAN+MRY+VIIVATVPIMC+YPFVQKYFNQG Sbjct: 239 LQLILRNILVTNQMQSAMGTGEAAAIALRLANIMRYAVIIVATVPIMCIYPFVQKYFNQG 298 Query: 300 VMIGAVKE 307 VMIGAVK Sbjct: 299 VMIGAVKS 306 >B1D5F4.1 B1D5F4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/301 (72%), Positives = 256/301 (85%) Query: 7 AAQEKTGKIKNNRTSDAVMEFVMYVIAAVXXXXXXXXXXXXXXASFSDPSAVAGGQVWLF 66 AA + K + SD ++E ++Y+ AA+ ASFSDPSAV G+VWLF Sbjct: 3 AAANLAIQPKKSGNSDKLLEILLYIWAAIVLIIVLYPLYFIIIASFSDPSAVGNGKVWLF 62 Query: 67 PKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISAAYALSRKDLTGRKYISL 126 PKGFT+DGYKELL H NIW GY NTI+YTVVGT+IGL VN+SA YALSRKDL GRK++SL Sbjct: 63 PKGFTVDGYKELLNHSNIWIGYRNTIVYTVVGTLIGLIVNVSAGYALSRKDLVGRKFLSL 122 Query: 127 YFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNIIVARTFFQTSIPGDLWEA 186 +FIFTMFFNGGL+PTFLTIRDF LYDTFLVMVLPFSV V++IIVARTFF+T IP +LWEA Sbjct: 123 FFIFTMFFNGGLVPTFLTIRDFHLYDTFLVMVLPFSVAVFDIIVARTFFRTGIPTELWEA 182 Query: 187 AQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNALIYLKNPDMYPLQLILRN 246 AQIDGCGNLR++A++VLPLSK I+AVL LW AVG WNSYFNALIYL++ ++YPLQLILR+ Sbjct: 183 AQIDGCGNLRFYAQMVLPLSKPIIAVLALWFAVGQWNSYFNALIYLQDKNLYPLQLILRD 242 Query: 247 ILITNQMQSGMGTGEAAQIALRLANMMRYSVIIVATVPIMCVYPFVQKYFNQGVMIGAVK 306 IL+TNQMQ+ +GTGEAAQIALRLAN++RYSVIIVATVPIMC+YPFVQK+FN+GVMIGAVK Sbjct: 243 ILVTNQMQTALGTGEAAQIALRLANLLRYSVIIVATVPIMCIYPFVQKHFNKGVMIGAVK 302 Query: 307 E 307 E Sbjct: 303 E 303 >B3K659.1 B3K659_9BACI Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 143/293 (48%), Positives = 205/293 (69%), Gaps = 1/293 (0%) Query: 15 IKNNRTSDAVMEFVMYVIAAVXXXXXXXXXXXXXXASFSDPSAVAGGQVWLFPKGFTLDG 74 +K+ DA + + Y V ASFSDP+ + G+VWLFPKGFTLDG Sbjct: 5 LKSKSRGDAWFDAINYFFLTVVMLIVLFPLYFVLIASFSDPNLIYSGEVWLFPKGFTLDG 64 Query: 75 YKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISAAYALSRKDLTGRKYISLYFIFTMFF 134 Y+ + +IW GY N++LY +GT+IG+AV + AAY L+RKDL GR I + + TMFF Sbjct: 65 YERIFNDSSIWIGYANSLLYAGIGTLIGVAVTVFAAYPLARKDLVGRPVIMWFLLITMFF 124 Query: 135 NGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNIIVARTFFQTSIPGDLWEAAQIDGCGN 194 +GGLIPT+L I+D + +T +V+P + G+ N+I+ RTFFQ+SIP ++WEAA IDGC N Sbjct: 125 SGGLIPTYLLIKDLHMLNTIWALVIPGAGGIMNVIIVRTFFQSSIPDEMWEAASIDGCSN 184 Query: 195 LRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNALIYLKNPDMYPLQLILRNILITNQMQ 254 R+F +VLPLSK+I+AV+ L+ VG+WN +F+ALIYL + YPLQL+LRNIL+ NQ+ Sbjct: 185 TRFFWSIVLPLSKSIIAVMVLYHVVGFWNGFFDALIYLNDESKYPLQLVLRNILVQNQVN 244 Query: 255 SGMGTG-EAAQIALRLANMMRYSVIIVATVPIMCVYPFVQKYFNQGVMIGAVK 306 SGM E+ +R+ +++Y VIIV+++P++ +YPF+QKYF +GVMIG++K Sbjct: 245 SGMMVDVESYAAKMRVTELIKYGVIIVSSLPLLILYPFLQKYFVKGVMIGSIK 297 >Q030Q2.1 Q030Q2_LACLS ABC-type sugar transport system, permease component Length = 300 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 155/258 (60%), Positives = 192/258 (74%) Query: 50 ASFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISA 109 ASFS+P VA G VW +PK ++L+GYK L IW Y NTILYTV GT GL VNI Sbjct: 43 ASFSNPQDVATGAVWFWPKSWSLEGYKTLFAQPLIWRSYFNTILYTVAGTAFGLLVNIPV 102 Query: 110 AYALSRKDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNII 169 YALSR+DL GRK+ISL ++ MF GGLIP +L ++F L +T VM++PF+V YNII Sbjct: 103 GYALSRRDLFGRKWISLLYVVPMFVTGGLIPIYLVTKNFGLLNTVWVMIVPFAVSPYNII 162 Query: 170 VARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNAL 229 VARTFFQ SIP LWEAAQ+DG RYF ++VLPLSKAI+AV+G W AVG WNS+FNAL Sbjct: 163 VARTFFQESIPNGLWEAAQVDGSSTFRYFFQIVLPLSKAILAVIGFWTAVGIWNSWFNAL 222 Query: 230 IYLKNPDMYPLQLILRNILITNQMQSGMGTGEAAQIALRLANMMRYSVIIVATVPIMCVY 289 IYL + ++ PLQLILR +LITNQ TG+ A + A+MM+Y+ I+V+T+PIM VY Sbjct: 223 IYLTDQNLQPLQLILRQLLITNQTLQSQATGDVASQLRQTADMMKYAAIVVSTLPIMMVY 282 Query: 290 PFVQKYFNQGVMIGAVKE 307 PF+QKYFNQGVM+GA+KE Sbjct: 283 PFLQKYFNQGVMVGAIKE 300 >B1D744.1 B1D744_9BACL Binding-protein-dependent transport systems inner membrane component Length = 302 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 142/263 (53%), Positives = 193/263 (73%), Gaps = 6/263 (2%) Query: 50 ASFSDPSAVAGGQVWLFPKGFTLDGYKELLRHDNIWTGYLNTILYTVVGTVIGLAVNISA 109 AS SDP AVA G++WL+PKG TL+GYK + ++ NIW GY NTI+YTVVGT I L V + A Sbjct: 39 ASISDPKAVASGEMWLWPKGITLEGYKMVFKNTNIWIGYENTIIYTVVGTAINLFVTLPA 98 Query: 110 AYALSRKDLTGRKYISLYFIFTMFFNGGLIPTFLTIRDFQLYDTFLVMVLPFSVGVYNII 169 AYALSR+D GR + F+ TMFF+GGLIPT+L +++ + ++ +VLP + ++NII Sbjct: 99 AYALSRRDFVGRNFFMGMFMVTMFFSGGLIPTYLLVKELGMMNSMWAIVLPSAASIWNII 158 Query: 170 VARTFFQTSIPGDLWEAAQIDGCGNLRYFARVVLPLSKAIVAVLGLWIAVGYWNSYFNAL 229 V+RTFFQ+SIP +L EAAQIDGC N+R F R++LPLS I+AV+ L+ VG WNSYF+AL Sbjct: 159 VSRTFFQSSIPKELQEAAQIDGCSNMRLFFRIILPLSLPIIAVMALFYGVGNWNSYFSAL 218 Query: 230 IYLKNPDMYPLQLILRNILITNQM--QSG----MGTGEAAQIALRLANMMRYSVIIVATV 283 IYL YPLQL+LR IL+ +M Q G + + A +A +++Y+VIIVAT+ Sbjct: 219 IYLNEAGKYPLQLVLRQILVLQEMGAQGGGAIDISSATAMNSKAEIAALVKYAVIIVATI 278 Query: 284 PIMCVYPFVQKYFNQGVMIGAVK 306 P++ +YPF+Q+YF QGVMIG+VK Sbjct: 279 PVIVIYPFLQRYFVQGVMIGSVK 301 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,731,603,141 Number of extensions: 66708239 Number of successful extensions: 234055 Number of sequences better than 1.0e-05: 5313 Number of HSP's gapped: 225856 Number of HSP's successfully gapped: 5313 Length of query: 307 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 172 Effective length of database: 1,788,859,178 Effective search space: 307683778616 Effective search space used: 307683778616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)