BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0346.0025.p
         (74 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1YKJ2.1 C1YKJ2_NOCDA Uncharacterized conserved protein                86   7e-16
A3HTD1.1 A3HTD1_9SPHI Putative uncharacterized protein                 80   5e-14
B1VWR4.1 B1VWR4_STRGG Putative uncharacterized protein                 78   3e-13
A3IDL5.1 A3IDL5_9BACI Putative uncharacterized protein                 77   4e-13
A6TUK3.1 A6TUK3_ALKMQ Putative uncharacterized protein                 75   2e-12

>C1YKJ2.1 C1YKJ2_NOCDA Uncharacterized conserved protein
          Length = 77

 Score = 86.3 bits (212), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query: 3  NDQKLYYGKNITVKFQPEKCIHSGVCVKGLPAVFNVSRRPWVEPDADAAEAIARHIDKCP 62
          + +K Y G++ITV F+ E+C H+ VCV GLP VF+  RRPW++PD  AA+ +A  I +CP
Sbjct: 5  HGKKAYEGESITVTFEAERCQHAAVCVNGLPEVFDTRRRPWIQPDGAAADRLAEVIRRCP 64

Query: 63 SGALRYEILD 72
          SGAL+Y + D
Sbjct: 65 SGALQYRLAD 74


>A3HTD1.1 A3HTD1_9SPHI Putative uncharacterized protein
          Length = 143

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query: 5  QKLYYGKNITVKFQPEKCIHSGVCVKGLPAVFNVSRRPWVEPDADAAEAIARHIDKCPSG 64
          +K Y   +ITV ++P KCIHS  CV GLP VF+ +RRPW++ +  ++E IA  IDKCPSG
Sbjct: 6  KKEYSNGDITVTWEPHKCIHSKKCVSGLPEVFDFNRRPWIKAEGTSSENIATQIDKCPSG 65

Query: 65 ALRY 68
          AL Y
Sbjct: 66 ALGY 69


>B1VWR4.1 B1VWR4_STRGG Putative uncharacterized protein
          Length = 152

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 46/67 (68%)

Query: 6  KLYYGKNITVKFQPEKCIHSGVCVKGLPAVFNVSRRPWVEPDADAAEAIARHIDKCPSGA 65
          + Y G+ I V F   +C+H+  CV+GLPAVF+V RRPW++PD   A+ IA  + +CPSGA
Sbjct: 21 RSYDGEGIVVGFDAHRCLHAAECVRGLPAVFDVGRRPWIQPDNAPADEIADVVHRCPSGA 80

Query: 66 LRYEILD 72
          L+Y   D
Sbjct: 81 LQYHRTD 87


>A3IDL5.1 A3IDL5_9BACI Putative uncharacterized protein
          Length = 74

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query: 8  YYGKNITVKFQPEKCIHSGVCVKGLPAVFNVSRRPWVEPDADAAEAIARHIDKCPSGALR 67
          Y G+ ITV F  + C H+  CVKGLP VFNV  +PW+ PD  AA+ +A  I++CPSGAL+
Sbjct: 12 YRGEEITVYFDKDMCQHAAECVKGLPEVFNVKAKPWIAPDEAAAKHVAEVINRCPSGALK 71

Query: 68 YEI 70
          Y+I
Sbjct: 72 YKI 74


>A6TUK3.1 A6TUK3_ALKMQ Putative uncharacterized protein
          Length = 210

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 39/63 (61%)

Query: 6   KLYYGKNITVKFQPEKCIHSGVCVKGLPAVFNVSRRPWVEPDADAAEAIARHIDKCPSGA 65
           K Y G+NIT+ F    C H   C+KGLP+VFNV  RPW+  D    E I + I KCPSGA
Sbjct: 75  KSYKGENITIHFNLGLCCHVASCIKGLPSVFNVDERPWINADGGTTEEIIQIISKCPSGA 134

Query: 66  LRY 68
           L Y
Sbjct: 135 LTY 137


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 460,617,826
Number of extensions: 15554965
Number of successful extensions: 33976
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 33975
Number of HSP's successfully gapped: 105
Length of query: 74
Length of database: 3,060,696,203
Length adjustment: 45
Effective length of query: 29
Effective length of database: 2,636,750,528
Effective search space: 76465765312
Effective search space used: 76465765312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)