BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0346.0021.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6G0.1 B3K6G0_9BACI Alpha-L-rhamnosidase 264 4e-69 Q93RE8.1 Q93RE8_BACGL Rhamnosidase A 233 7e-60 B1ZZ16.1 B1ZZ16_OPITP Alpha-L-rhamnosidase 229 1e-58 A6EG29.1 A6EG29_9SPHI Rhamnosidase A 226 1e-57 C1Z071.1 C1Z071_PEDHE Alpha-L-rhamnosidase 222 2e-56 >B3K6G0.1 B3K6G0_9BACI Alpha-L-rhamnosidase Length = 894 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 132/224 (58%), Positives = 159/224 (70%), Gaps = 3/224 (1%) Query: 1 MFGLVEGPAKERTTDKLLKLLEESGHHLTTGFVGTPYLNLVLSEAGHTDAAYKLLLQTDY 60 MFGL++ A++R D+L LLEES HLTTGFVGTPY+N VLS G DAAYKLLLQ DY Sbjct: 663 MFGLLDEAAEKRAADRLYALLEESRFHLTTGFVGTPYINHVLSRHGMHDAAYKLLLQQDY 722 Query: 61 PSWLYQVTQGATTIWEHWDGIKEDGSFWSKDMNSFNHYAYGAIGDFLYRHVAGIELDEAY 120 PSWLY VT+GATTIWEHWDGIKEDGSFWS+DMNSFNHYAYGAIG++LYR VAGI+ E Sbjct: 723 PSWLYPVTKGATTIWEHWDGIKEDGSFWSRDMNSFNHYAYGAIGEWLYRSVAGIQTVEDA 782 Query: 121 PGYKAFVIKPQPGGDLTWTAAALETMYGRIRSEWNITAD-QLEMSVSVPPNTSATLYLPK 179 PGYK P PG LTW ++TMYG +RS W + D + ++ V +PPNT+A + LP Sbjct: 783 PGYKHIRFAPVPGEGLTWAEGKIDTMYGTVRSCWRMEDDGEFQLEVCIPPNTTAEICLPG 842 Query: 180 A-DLPRVLEGD-VPLEHAAGVHSTEQLEHEVKVILGSGDYKFSY 221 D+ V EG +PL A G+H+ E V + GSG+Y F Y Sbjct: 843 VFDVSNVKEGSTIPLNEAKGIHTAVDGEAGVVIQAGSGEYTFRY 886 >Q93RE8.1 Q93RE8_BACGL Rhamnosidase A Length = 886 Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 113/223 (50%), Positives = 147/223 (65%), Gaps = 1/223 (0%) Query: 1 MFGLVEGPAKERTTDKLLKLLEESGHHLTTGFVGTPYLNLVLSEAGHTDAAYKLLLQTDY 60 MF L+E +++ D+L KL+EESG LTTGFVGTPYL VL+ G D AYKLL + +Y Sbjct: 664 MFDLLEEGTRQQAADRLAKLIEESGTQLTTGFVGTPYLCHVLTRFGRADLAYKLLERREY 723 Query: 61 PSWLYQVTQGATTIWEHWDGIKEDGSFWSKDMNSFNHYAYGAIGDFLYRHVAGIELDEAY 120 PSWLY V +GATTIWEHWDGIK DGSFWS DMNS+NHYAYGAIGD+L+ VAGI+ + + Sbjct: 724 PSWLYPVVKGATTIWEHWDGIKPDGSFWSDDMNSYNHYAYGAIGDWLFGSVAGIDTEASA 783 Query: 121 PGYKAFVIKPQPGGDLTWTAAALETMYGRIRSEWNITAD-QLEMSVSVPPNTSATLYLPK 179 PGYK ++P PGG L + A LE+ YG IRS W D ++ VP N +A + LP Sbjct: 784 PGYKRIRVRPVPGGSLKFAEATLESPYGEIRSAWRRRPDGGIDYEFEVPANAAANVLLPD 843 Query: 180 ADLPRVLEGDVPLEHAAGVHSTEQLEHEVKVILGSGDYKFSYK 222 A +E P++ A G+ + + ++GSG Y+F+ K Sbjct: 844 ASKANAMESQQPIDAAEGISVVTETAEGLAFVVGSGTYRFTVK 886 >B1ZZ16.1 B1ZZ16_OPITP Alpha-L-rhamnosidase Length = 941 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 116/223 (52%), Positives = 146/223 (65%), Gaps = 1/223 (0%) Query: 2 FGLVEGPAKERTTDKLLKLLEESGHHLTTGFVGTPYLNLVLSEAGHTDAAYKLLLQTDYP 61 F L+ + +L ++ G+HLTTGF+GTPYL VLS+ G D AY LL Q YP Sbjct: 717 FDLLPEDKRPEAARRLAADVKRFGNHLTTGFLGTPYLCRVLSDHGQLDTAYALLNQDTYP 776 Query: 62 SWLYQVTQGATTIWEHWDGIKEDGSFWSKDMNSFNHYAYGAIGDFLYRHVAGIELDEAYP 121 SWLY V+QGATTIWE WDGIK DG+F MNSFNHYAYGAIGD++Y VAGI++D A P Sbjct: 777 SWLYPVSQGATTIWERWDGIKPDGTFQDAGMNSFNHYAYGAIGDWMYSVVAGIDIDPAAP 836 Query: 122 GYKAFVIKPQPGGDLTWTAAALETMYGRIRSEWNITADQLEMSVSVPPNTSATLYLP-KA 180 GYK +I+P+PGG LT A LET YG++ S W + LE+ V +PPNT AT+ LP A Sbjct: 837 GYKHLLIQPRPGGGLTDVRARLETQYGQVASAWKLADGHLELVVEIPPNTRATIRLPGAA 896 Query: 181 DLPRVLEGDVPLEHAAGVHSTEQLEHEVKVILGSGDYKFSYKL 223 + V E PL AAG+ + + V V GSG+Y+F+Y L Sbjct: 897 RMKDVRESGQPLARAAGITQVSRRDDAVIVAAGSGEYRFTYPL 939 >A6EG29.1 A6EG29_9SPHI Rhamnosidase A Length = 920 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 148/222 (66%) Query: 2 FGLVEGPAKERTTDKLLKLLEESGHHLTTGFVGTPYLNLVLSEAGHTDAAYKLLLQTDYP 61 F L + + ++L + + G+HLTTGF+GTPYL VLS G+TD AY+LLLQ YP Sbjct: 699 FDLFPENLRAQAAERLANNVHDYGNHLTTGFLGTPYLCHVLSRFGYTDVAYQLLLQESYP 758 Query: 62 SWLYQVTQGATTIWEHWDGIKEDGSFWSKDMNSFNHYAYGAIGDFLYRHVAGIELDEAYP 121 SWLY V +GATTIWE WDGIKEDG+F + MNSFNHYAYGAIGD++YR++AGI+ E Sbjct: 759 SWLYPVKKGATTIWERWDGIKEDGTFQTVSMNSFNHYAYGAIGDWMYRNMAGIKPAEGTA 818 Query: 122 GYKAFVIKPQPGGDLTWTAAALETMYGRIRSEWNITADQLEMSVSVPPNTSATLYLPKAD 181 GYK+ VI PQPGG++ A L+T YG ++S W + ++M V VP NT+AT+ LPKA Sbjct: 819 GYKSIVIAPQPGGNIRRVAGGLDTPYGLVKSSWRLEDGLMKMEVVVPVNTTATIVLPKAA 878 Query: 182 LPRVLEGDVPLEHAAGVHSTEQLEHEVKVILGSGDYKFSYKL 223 +V E + L AG+ + ++ + GSG Y F YK+ Sbjct: 879 GKQVRETGMELIKVAGISAITNASKDLSLKTGSGTYHFEYKM 920 >C1Z071.1 C1Z071_PEDHE Alpha-L-rhamnosidase Length = 904 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 144/220 (65%), Gaps = 2/220 (0%) Query: 2 FGLVEGPAKERTTDKLLKLLEESGHHLTTGFVGTPYLNLVLSEAGHTDAAYKLLLQTDYP 61 F L+ + + +L + G+HLTTGF+GTPYL VL+ G+ D AYKLLLQ YP Sbjct: 687 FDLLPENLRAQAAQRLADNVAAYGNHLTTGFLGTPYLCHVLTRFGYNDVAYKLLLQDTYP 746 Query: 62 SWLYQVTQGATTIWEHWDGIKEDGSFWSKDMNSFNHYAYGAIGDFLYRHVAGIELDEAYP 121 SWLY V +GATTIWE WDGIK DGSF + MNSFNHYAYGAIGD++YR V GI +E P Sbjct: 747 SWLYPVKKGATTIWERWDGIKPDGSFQAVSMNSFNHYAYGAIGDWMYRTVTGI--NETAP 804 Query: 122 GYKAFVIKPQPGGDLTWTAAALETMYGRIRSEWNITADQLEMSVSVPPNTSATLYLPKAD 181 GYK I P+PGGDL A LETMYG+++S W++ + ++ + VPPNT+A + LP Sbjct: 805 GYKEISIAPKPGGDLKNAGAELETMYGKVKSAWSVADGKTKIDIVVPPNTTARVILPGTG 864 Query: 182 LPRVLEGDVPLEHAAGVHSTEQLEHEVKVILGSGDYKFSY 221 V E +V L A G+ + + +++ ++ GSG Y F Y Sbjct: 865 NAVVTESNVALNKAKGLRAIKNVDNNTELTAGSGTYHFEY 904 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,514,164,148 Number of extensions: 64577807 Number of successful extensions: 147619 Number of sequences better than 1.0e-05: 265 Number of HSP's gapped: 147354 Number of HSP's successfully gapped: 265 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)